genome.fa.s19.2.7.7.80.10.50.1000.36.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  61124829

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   

This is table  36  of  205  ( 24568 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10826234--10826415	43	4.3	43	85	0	222	21	17	33	27	1.96
10827856--10828204	44	8.0	44	64	12	135	26	22	19	30	1.98
10827776--10828268	132	3.7	132	88	1	713	27	22	19	31	1.98
10828064--10828245	44	4.1	45	69	9	124	28	21	21	28	1.99
10827781--10828268	263	1.9	263	88	1	755	27	22	19	30	1.98
10828169--10828349	96	1.9	95	88	3	274	29	24	17	28	1.97
10828380--10828494	44	2.6	46	78	12	139	24	22	24	28	1.99
10828868--10829004	42	3.2	43	64	17	111	22	19	26	31	1.98
10828446--10829395	87	10.9	87	90	0	1407	24	22	23	30	1.99
10829840--10830035	108	1.8	108	89	0	311	47	10	16	25	1.79
10830001--10830101	45	2.3	43	78	10	103	53	7	11	26	1.65
10830371--10830430	13	5.0	12	76	15	54	1	16	1	80	0.89
10830372--10830430	19	3.4	17	78	19	59	1	16	1	79	0.89
10830368--10830414	7	7.0	7	80	9	53	2	19	0	78	0.85
10830865--10830916	15	3.5	15	86	5	70	3	3	5	86	0.78
10830879--10830926	20	2.4	20	80	16	55	2	2	10	85	0.77
10830878--10830928	11	4.7	11	90	7	70	1	1	11	84	0.79
10830864--10830927	14	4.6	13	78	18	58	3	3	9	84	0.84
10842042--10842114	9	7.7	9	80	10	65	36	1	4	57	1.26
10842042--10842125	9	8.6	10	78	15	61	35	2	3	58	1.28
10842042--10842125	19	4.3	19	78	7	80	35	2	3	58	1.28
10842164--10842239	10	8.1	10	73	16	56	31	2	1	64	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10844925--10845053	45	2.9	45	84	1	179	33	20	22	23	1.97
10846484--10846515	16	1.9	17	93	6	57	84	0	12	3	0.74
10850709--10850733	12	2.1	12	100	0	50	52	24	8	16	1.70
10851578--10851617	20	1.9	22	85	10	57	52	7	17	22	1.69
10855683--10855737	12	4.8	12	75	8	60	0	25	0	74	0.82
10855696--10855737	22	1.9	22	85	9	59	0	26	0	73	0.83
10856391--10856478	46	1.9	46	100	0	176	26	21	32	19	1.97
10863219--10863283	33	2.1	33	91	8	109	56	0	1	41	1.08
10863577--10863627	16	3.2	16	91	0	84	27	27	3	41	1.73
10867263--10867364	38	2.6	38	90	6	150	63	0	1	33	1.12
10867543--10867966	143	3.0	143	91	0	670	27	23	19	29	1.98
10868849--10868886	20	2.0	20	89	5	60	0	13	5	81	0.85
10871463--10871502	19	2.1	19	86	9	55	42	12	22	22	1.87
10877114--10877157	19	2.2	20	88	4	63	56	0	2	40	1.11
10877499--10877599	45	2.2	45	87	0	139	50	2	4	41	1.39
10877551--10877621	32	2.2	32	87	7	99	53	2	2	40	1.30
10877944--10877974	16	1.9	16	93	0	53	70	0	0	29	0.87
10886111--10886190	25	3.2	25	87	0	115	25	28	15	31	1.95
10886111--10886208	50	2.0	50	85	0	133	27	27	15	29	1.96
10890214--10890391	40	4.4	39	76	9	151	23	17	28	30	1.97
10896488--10896548	25	2.4	25	76	10	63	40	3	0	55	1.16
10902536--10902587	27	2.0	27	85	11	72	36	1	1	59	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10919351--10919405	15	3.8	15	76	9	53	40	0	0	60	0.97
10919877--10919938	16	3.2	19	68	28	58	30	6	6	56	1.50
10919873--10919955	39	2.1	39	100	0	166	32	4	4	57	1.41
10921353--10921400	18	2.7	18	78	9	62	41	2	16	39	1.60
10922660--10922704	20	2.2	20	100	0	90	40	0	8	51	1.33
10925088--10925154	34	2.0	33	82	8	82	31	8	23	35	1.86
10925353--10925506	6	25.7	6	86	5	115	20	10	14	53	1.70
10925371--10925512	6	23.7	6	87	0	122	20	9	15	54	1.68
10925359--10925506	18	8.2	18	81	8	160	20	10	15	54	1.70
10925785--10925983	62	3.2	62	97	0	364	23	9	21	46	1.79
10927789--10928090	95	3.2	95	93	0	496	28	7	18	45	1.77
10927914--10927978	26	2.6	25	92	2	103	29	9	13	47	1.74
10927819--10927900	26	3.1	25	85	7	92	29	8	15	46	1.76
10928774--10928833	18	3.2	18	71	13	57	38	36	13	11	1.81
10928823--10928874	21	2.5	22	84	9	72	34	44	5	15	1.70
10928841--10928882	21	2.0	21	90	0	66	35	42	9	11	1.74
10929286--10929331	24	2.0	24	86	4	67	47	4	21	26	1.69
10929568--10929646	36	2.2	36	97	0	149	48	22	8	20	1.77
10929584--10929649	20	3.5	20	68	29	63	53	22	6	18	1.66
10929584--10929670	36	2.4	36	88	3	122	54	20	5	19	1.65
10930473--10930509	6	6.2	6	100	0	74	16	67	16	0	1.23
10936824--10936903	39	2.1	39	92	0	133	41	7	27	23	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10938331--10938374	20	2.1	21	83	4	54	38	6	2	52	1.41
10938331--10938374	21	2.2	20	84	12	54	38	6	2	52	1.41
10940963--10941041	23	3.5	23	78	1	88	22	18	20	37	1.94
10940995--10941060	22	2.9	22	82	8	62	19	18	18	43	1.88
10944684--10944756	24	3.3	23	72	21	75	21	12	8	57	1.61
10944675--10944756	42	2.0	42	92	4	139	21	12	8	57	1.61
10945466--10945502	9	4.1	9	85	0	56	29	13	13	43	1.82
10946141--10946258	40	3.1	39	82	12	147	41	2	20	35	1.66
10946813--10946913	49	2.0	50	94	1	177	36	12	20	29	1.90
10947253--10947327	25	2.9	25	78	4	78	69	2	26	1	1.10
10947980--10948025	24	1.9	24	83	16	60	32	0	17	50	1.47
10948182--10948316	40	3.5	40	76	14	140	25	17	24	33	1.96
10948460--10948499	20	2.0	20	90	9	64	37	10	20	32	1.85
10948985--10949012	13	2.2	13	100	0	56	35	0	14	50	1.43
10953312--10953715	218	1.9	216	83	2	531	32	13	13	41	1.82
10954293--10954369	37	2.1	37	85	4	102	20	28	6	44	1.76
10954306--10954394	37	2.4	38	81	5	101	24	28	4	42	1.74
10956491--10956744	37	6.9	37	71	4	172	21	34	3	40	1.72
10960405--10960599	37	5.3	37	70	8	137	21	33	5	40	1.75
10960404--10960621	73	3.0	73	78	4	240	21	33	5	39	1.75
10963195--10963357	37	4.4	36	82	6	152	20	32	4	42	1.73
10963195--10963370	74	2.4	74	81	8	191	19	32	4	43	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10964424--10964696	37	7.4	37	77	4	201	18	39	4	38	1.70
10964425--10964694	111	2.4	110	79	6	260	18	38	4	38	1.70
10965535--10965750	74	2.9	72	81	2	225	19	34	5	40	1.74
10965533--10965918	37	10.4	37	75	3	195	18	36	4	40	1.72
10965719--10965918	111	1.8	111	80	6	244	17	37	4	40	1.70
10972606--10972654	20	2.5	19	77	6	53	16	14	6	63	1.49
10975119--10975171	27	2.0	27	85	14	74	41	0	3	54	1.18
10975119--10975177	27	2.1	27	82	14	68	44	0	3	52	1.17
10976519--10976678	44	3.3	44	64	26	108	33	0	12	54	1.38
10976451--10976949	103	4.9	102	87	6	679	29	0	15	55	1.44
10976451--10976949	203	2.4	202	85	6	675	29	0	15	55	1.44
10976929--10976964	15	2.3	16	95	4	65	30	0	5	63	1.17
10979000--10979114	33	3.5	33	82	1	122	15	43	13	27	1.84
10979309--10979616	77	4.1	77	91	3	457	27	7	11	53	1.62
10983238--10983293	21	2.8	19	84	10	85	33	10	19	35	1.87
10983242--10983300	21	3.0	21	80	14	81	33	10	20	35	1.86
10983556--10983734	3	58.7	3	71	13	116	30	7	2	60	1.36
10983932--10983967	4	8.8	4	87	6	54	22	0	2	75	0.94
10983974--10984015	19	2.2	20	82	4	50	30	7	11	50	1.66
10984324--10984378	27	2.0	27	82	0	65	36	7	7	49	1.58
10984978--10985044	32	2.1	32	88	5	100	38	10	8	41	1.71
10988727--10988813	31	2.9	30	74	14	81	42	12	10	34	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10988777--10988845	31	2.4	28	79	13	77	37	11	11	39	1.78
10998689--10998715	3	9.0	3	100	0	54	33	0	0	66	0.92
11001007--11001036	16	1.9	16	93	6	53	50	20	0	30	1.49
11002155--11002310	25	6.4	24	80	13	142	32	19	23	24	1.98
11002139--11002290	49	3.1	49	86	10	179	30	19	24	25	1.98
11002171--11002310	73	1.9	74	89	4	221	32	19	25	23	1.98
11002155--11002310	49	3.2	48	84	8	174	32	19	23	24	1.98
11023077--11023133	25	2.1	28	87	9	84	47	1	5	45	1.35
11023090--11023141	25	2.1	25	78	3	61	53	0	3	42	1.19
11030407--11030521	59	1.9	59	96	0	212	32	21	6	39	1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205