genome.fa.s19.2.7.7.80.10.50.1000.156.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  61124829

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   

This is table  156  of  205  ( 24568 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46698680--46698749	36	1.9	36	82	0	86	34	5	1	58	1.31
46698747--46698868	29	4.1	29	74	14	90	38	3	1	56	1.25
46698786--46698843	19	3.0	19	74	2	62	43	0	1	55	1.10
46698788--46698886	10	10.4	9	72	17	67	34	4	2	59	1.28
46707143--46707276	65	2.1	65	97	0	250	34	22	13	29	1.92
46708864--46708925	30	2.1	29	93	3	106	40	29	17	12	1.87
46716218--46716592	93	4.0	93	87	4	499	26	25	15	32	1.96
46718346--46718389	23	1.9	23	86	9	63	34	2	0	63	1.07
46729542--46729573	15	2.1	16	88	11	50	46	0	0	53	1.00
46730402--46730839	221	2.0	221	98	0	849	41	15	16	26	1.88
46734606--46734653	22	2.2	22	96	0	87	54	4	20	20	1.61
46742027--46742064	20	1.9	20	94	0	67	55	13	0	31	1.38
46744146--46744191	22	2.1	22	91	0	74	13	17	13	56	1.67
46744222--46744287	23	2.9	23	68	11	64	63	10	16	9	1.50
46751612--46751651	3	13.7	3	94	5	73	67	0	0	32	0.91
46761307--46761351	21	2.1	23	88	12	69	46	0	4	48	1.22
46761492--46761539	22	2.1	23	88	3	71	43	0	33	22	1.54
46762727--46762782	25	2.2	25	77	3	58	35	12	5	46	1.65
46770013--46770068	25	2.2	26	80	3	69	66	5	5	23	1.34
46771308--46771423	58	2.0	58	98	0	223	31	15	30	22	1.95
46774028--46774060	17	1.9	18	88	11	52	45	0	12	42	1.41
46775367--46775422	29	1.9	29	85	7	78	42	19	14	23	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46776822--46776871	20	2.5	20	87	9	66	28	2	4	66	1.21
46778929--46778980	24	2.2	24	92	0	86	34	1	7	55	1.39
46780010--46780059	27	1.9	27	84	8	68	60	10	14	16	1.59
46780459--46780489	10	3.1	10	95	0	53	48	0	9	41	1.36
46780475--46780539	26	2.5	26	72	16	62	61	0	6	32	1.21
46780522--46780587	33	2.0	33	85	11	91	48	3	9	39	1.50
46780568--46780603	18	2.0	18	94	0	63	52	0	8	38	1.32
46780685--46780736	26	2.0	27	88	3	79	61	1	7	28	1.34
46781387--46781412	2	13.0	2	100	0	52	0	0	50	50	1.00
46781782--46781808	13	2.1	13	100	0	54	7	14	37	40	1.74
46792666--46793465	1	800.0	1	99	0	1591	0	0	0	99	0.01
46793545--46793579	11	3.0	12	87	8	54	0	17	0	82	0.66
46795494--46795531	15	2.5	16	83	12	53	68	10	0	21	1.19
46796244--46796284	20	2.0	20	90	9	66	63	17	4	14	1.47
46798526--46798566	22	1.9	21	85	14	57	26	21	21	29	1.99
46802673--46802760	13	7.5	13	67	26	54	36	1	0	62	1.03
46802671--46802759	21	4.0	21	77	11	97	38	1	0	60	1.04
46808737--46808778	22	1.9	22	95	0	75	14	35	7	42	1.73
46812684--46813581	456	2.0	455	99	0	1760	27	13	18	40	1.88
46816623--46816674	25	2.0	26	85	3	70	32	5	11	50	1.62
46816698--46816739	15	2.9	15	82	10	52	52	0	0	47	1.00
46816792--46816829	16	2.4	17	82	13	53	55	0	0	44	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46816695--46816881	100	1.9	100	94	0	329	50	3	2	43	1.32
46816785--46816839	15	3.7	15	80	9	60	52	0	0	47	1.00
46817933--46818203	137	2.0	138	91	2	447	46	14	14	25	1.81
46825591--46825616	12	2.2	12	100	0	52	57	0	19	23	1.40
46833606--46833655	25	2.0	25	100	0	100	28	24	16	32	1.96
46848534--46848632	41	2.4	41	89	1	155	24	22	13	40	1.89
46872754--46872795	22	1.9	22	90	0	66	19	7	4	69	1.31
46873100--46873154	24	2.3	23	84	9	76	41	0	1	56	1.10
46876380--46876456	14	5.0	15	71	20	52	42	14	9	33	1.77
46876396--46876435	20	2.0	20	90	0	62	50	12	10	27	1.72
46876384--46876450	34	1.9	35	90	3	109	46	13	8	31	1.74
46877348--46877384	20	1.9	18	89	10	56	37	10	10	40	1.75
46881627--46881676	2	25.0	2	100	0	100	50	0	50	0	1.00
46888323--46888407	43	2.0	43	90	0	134	34	14	23	28	1.93
46889317--46889411	48	2.0	48	97	0	181	29	12	42	15	1.84
46892875--46892968	48	2.0	48	83	8	120	23	12	23	40	1.89
46905223--46905281	22	2.7	22	69	10	57	40	13	1	44	1.54
46905576--46905620	22	2.0	22	100	0	90	40	4	17	37	1.70
46911296--46911320	12	2.1	12	100	0	50	24	8	0	68	1.16
46911952--46911987	16	2.2	17	90	5	56	36	11	0	52	1.37
46911979--46912051	23	3.3	23	66	22	57	39	8	4	47	1.52
46911982--46912127	47	3.2	43	71	18	107	39	8	2	49	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46912041--46912139	53	1.9	50	83	6	126	39	8	1	51	1.38
46912501--46912545	21	2.2	21	88	11	67	28	8	2	60	1.39
46912577--46912966	108	3.6	108	93	1	631	30	14	19	35	1.91
46912573--46913011	108	4.1	108	90	1	625	30	15	18	35	1.92
46912577--46912966	215	1.8	215	90	1	629	30	14	19	35	1.91
46916462--46916752	66	4.4	66	79	2	289	28	3	44	23	1.69
46916601--46916647	21	2.1	24	84	11	64	31	0	44	23	1.54
46916462--46916747	33	8.7	33	77	1	232	28	3	44	23	1.68
46916491--46916747	99	2.6	99	76	1	264	28	3	44	23	1.70
46921682--46921724	22	2.0	22	90	0	68	9	13	27	48	1.73
46921822--46922108	42	6.8	42	82	6	300	29	20	21	27	1.98
46922105--46922142	18	2.1	18	95	0	67	31	26	5	36	1.79
46922558--46922647	21	4.3	21	81	5	110	4	42	18	34	1.71
46922558--46922647	42	2.1	42	87	4	128	4	42	18	34	1.71
46924969--46925015	23	2.0	23	95	0	85	12	23	12	51	1.74
46952099--46952491	189	2.1	189	89	3	596	28	21	20	29	1.98
46956588--46956677	43	2.1	44	87	6	130	32	22	20	25	1.98
46956651--46956705	28	2.0	28	88	0	83	34	23	16	25	1.95
46956613--46956747	71	1.9	71	83	8	177	34	22	20	23	1.97
46956706--46956797	42	2.2	42	80	5	105	31	19	25	23	1.98
46957224--46957295	21	3.4	21	86	0	90	4	44	16	34	1.67
46958319--46958480	25	6.4	25	78	10	143	38	1	15	44	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46958383--46958666	9	32.2	9	72	18	165	39	0	15	45	1.49
46958352--46958503	34	4.3	35	73	16	118	38	1	16	43	1.56
46958487--46958519	16	2.1	16	100	0	66	30	0	24	45	1.53
46958405--46958562	84	1.9	84	86	5	230	40	0	14	44	1.45
46958383--46958524	25	5.6	25	71	17	89	39	0	16	42	1.54
46958383--46958666	34	8.3	34	72	17	116	39	0	15	45	1.49
46958599--46958631	16	2.1	16	100	0	66	30	0	24	45	1.53
46958568--46958665	47	2.0	49	88	5	146	35	0	16	47	1.47
46958436--46958692	112	2.3	113	90	5	396	40	0	14	44	1.50
46958505--46958680	34	4.9	34	72	20	142	38	1	13	46	1.51
46958657--46958701	22	2.1	21	87	4	63	40	4	13	42	1.64
46961333--46961388	16	3.5	16	80	7	69	23	7	3	66	1.33
46961808--46961883	21	3.7	20	77	7	73	43	36	1	18	1.59
46961814--46961879	34	1.9	34	84	6	89	43	36	1	18	1.59
46961808--46961883	7	11.0	7	72	2	55	43	36	1	18	1.59
46962058--46962098	13	3.1	14	82	6	50	46	24	7	21	1.77
46963165--46963196	16	2.0	16	93	0	55	21	9	18	50	1.75
46964284--46964316	15	2.3	15	89	5	50	36	0	6	57	1.23
46964319--46964365	20	2.3	20	85	7	60	65	4	0	29	1.11
46965092--46965157	11	6.4	11	73	21	54	60	0	1	37	1.06
46965143--46965203	30	2.0	30	93	6	106	67	0	1	31	1.01
46965081--46965188	39	2.6	41	89	8	175	63	0	1	34	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46971739--46971788	13	3.8	13	81	0	64	30	4	24	42	1.73
46973238--46973297	24	2.6	23	76	15	61	35	1	11	51	1.48
46975037--46975100	28	2.3	28	81	10	78	45	32	4	17	1.69
46975314--46975344	13	2.3	14	94	5	55	32	6	19	41	1.77
46979294--46979319	3	8.7	3	100	0	52	34	0	0	65	0.93
46979726--46979764	20	2.0	20	94	0	69	7	10	10	71	1.30
46985801--46985840	20	2.0	20	85	0	53	50	10	15	25	1.74
46987055--46987136	43	1.9	42	92	2	137	48	8	3	39	1.51
46987171--46987223	16	3.3	16	94	0	88	37	5	33	22	1.78
46987458--46987645	61	3.1	61	74	11	233	50	4	1	43	1.31

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205