genome.fa.s19.2.7.7.80.10.50.1000.174.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  61124829

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   

This is table  174  of  205  ( 24568 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51698593--51698626	17	1.9	18	88	5	52	17	0	2	79	0.86
51699477--51699566	21	4.3	21	76	8	76	25	34	17	22	1.96
51699500--51699568	21	3.3	21	80	11	79	26	33	20	20	1.97
51699833--51699886	22	2.5	22	93	0	90	22	3	20	53	1.61
51706971--51707007	18	2.1	18	89	0	56	29	8	2	59	1.40
51707916--51708880	483	2.0	483	100	0	1930	34	21	7	36	1.81
51711612--51711956	102	3.4	102	91	2	509	30	23	14	31	1.94
51711611--51711959	153	2.3	149	83	4	423	30	23	14	31	1.94
51711612--51711959	51	6.9	51	79	6	352	30	23	14	31	1.94
51713153--51713303	41	3.7	41	89	0	212	23	24	19	31	1.98
51713089--51713217	67	1.9	68	83	1	170	30	24	19	25	1.98
51719435--51719471	9	4.1	9	85	0	56	29	8	13	48	1.71
51721136--51721169	15	2.5	13	90	9	50	0	14	5	79	0.91
51724119--51724169	23	2.5	20	75	25	52	9	13	0	76	1.02
51724743--51724907	62	2.7	61	80	2	186	19	23	30	26	1.98
51729481--51729525	23	2.0	23	86	8	65	33	11	20	35	1.88
51729716--51729741	5	5.2	5	100	0	52	19	19	23	38	1.93
51735145--51735226	9	8.8	9	73	12	58	25	0	19	54	1.44
51735117--51735226	20	5.8	19	73	18	95	26	0	18	54	1.49
51735117--51735249	46	2.8	46	74	18	128	27	2	16	54	1.54
51735649--51735686	18	2.1	18	85	9	51	42	0	21	36	1.53
51739714--51739742	5	5.8	5	100	0	58	79	0	0	20	0.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51740675--51740763	25	3.7	25	75	10	96	16	26	23	32	1.96
51740692--51740784	47	2.0	46	87	10	136	18	25	21	34	1.96
51740692--51740784	46	2.0	47	87	10	138	18	25	21	34	1.96
51744370--51744409	21	1.9	21	89	0	62	62	7	25	5	1.42
51744840--51744897	29	2.0	29	83	6	73	25	18	15	39	1.91
51745104--51745184	22	3.6	23	80	12	89	25	30	0	43	1.55
51745157--51745257	40	2.5	41	83	8	125	32	20	0	45	1.58
51747054--51747093	18	2.2	19	90	4	64	22	35	7	35	1.82
51747481--51747763	25	11.7	25	77	13	297	41	1	13	43	1.51
51747506--51747763	70	3.6	70	85	9	385	41	0	13	43	1.49
51747476--51747763	145	2.0	146	95	2	517	42	1	13	43	1.51
51747771--51747814	13	3.4	13	90	0	70	50	22	0	27	1.50
51747840--51747945	13	8.5	13	73	10	69	47	27	0	25	1.53
51747813--51747942	61	2.1	61	91	5	210	46	29	0	23	1.52
51747822--51747967	61	2.5	58	82	11	160	45	27	0	26	1.58
51747969--51748221	24	9.5	23	68	25	128	45	26	0	28	1.54
51747866--51748566	86	8.2	87	89	6	1003	45	25	0	28	1.56
51748027--51748090	33	2.0	32	96	3	119	48	25	0	26	1.51
51747886--51748566	250	2.7	250	90	5	1018	45	25	0	28	1.56
51748219--51748393	25	6.5	23	68	25	80	45	25	0	28	1.54
51748277--51748538	33	8.8	32	73	21	225	45	26	0	27	1.57
51748305--51748565	33	9.5	25	75	16	127	45	25	0	28	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51747866--51748480	336	1.8	338	91	4	1017	45	26	0	28	1.55
51748478--51748526	24	2.0	24	84	0	62	42	26	2	28	1.66
51748512--51748575	23	2.8	23	80	0	74	46	21	1	29	1.61
51748572--51748796	116	1.9	116	88	3	337	37	9	10	41	1.73
51751383--51751570	95	2.0	94	95	1	340	31	23	19	25	1.98
51751920--51752265	126	2.8	125	87	3	500	32	22	16	28	1.95
51753545--51753646	46	2.3	44	94	3	177	68	0	11	18	1.25
51753653--51753686	17	1.9	18	88	5	52	73	2	2	20	1.09
51756769--51756911	75	1.9	75	88	2	216	38	23	16	20	1.93
51757398--51757435	11	3.5	11	89	7	51	21	10	0	68	1.19
51758701--51758777	38	2.0	38	97	0	145	42	11	16	28	1.84
51759028--51759359	51	6.7	51	79	11	273	29	15	25	29	1.96
51759082--51759165	26	3.3	26	63	21	68	27	11	28	32	1.92
51759150--51759237	44	2.0	44	89	8	135	29	15	26	28	1.96
51759214--51759357	50	2.9	50	92	2	227	29	16	23	29	1.96
51772320--51772359	21	2.0	21	85	5	55	15	32	7	45	1.74
51781118--51781162	22	2.0	22	100	0	90	31	26	0	42	1.56
51782450--51782826	125	3.0	125	92	1	623	29	15	23	32	1.95
51783710--51784196	23	21.8	23	85	6	635	26	0	25	47	1.55
51783710--51784196	44	10.9	45	86	5	609	26	0	25	47	1.55
51783710--51784196	67	7.3	68	89	3	638	26	0	25	47	1.55
51784257--51784304	25	1.9	25	100	0	96	39	14	0	45	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51784661--51784700	18	2.2	18	95	0	71	40	7	30	22	1.81
51785331--51785355	7	3.6	7	100	0	50	60	12	0	28	1.32
51785526--51785563	20	1.9	20	84	10	51	55	7	2	34	1.43
51786511--51786550	11	3.6	11	93	6	64	42	0	35	22	1.54
51791259--51791354	48	2.0	48	85	0	129	28	26	26	19	1.99
51794290--51794422	55	2.4	54	83	7	142	48	0	2	49	1.13
51794589--51794658	16	4.4	16	80	5	79	34	24	2	38	1.70
51794589--51794659	32	2.2	32	85	5	90	33	23	4	38	1.75
51795212--51795260	4	12.0	4	91	4	71	71	0	4	24	1.03
51795213--51795260	21	2.3	21	85	3	71	72	0	4	22	1.01
51796845--51796877	17	2.0	17	94	5	59	30	15	0	54	1.41
51806266--51806333	27	2.5	27	80	0	82	35	19	11	33	1.88
51810237--51810266	6	5.2	6	96	4	53	83	0	16	0	0.65
51810211--51810268	27	2.1	28	83	3	73	74	1	17	6	1.12
51810260--51810333	33	2.2	34	88	7	107	56	5	27	10	1.55
51810277--51810335	16	3.5	17	72	19	52	55	8	25	10	1.61
51818137--51818224	25	3.5	25	82	0	86	29	21	21	27	1.99
51818658--51818700	22	2.0	22	86	4	61	20	11	25	41	1.86
51825601--51825649	23	2.1	23	85	7	64	36	4	22	36	1.73
51837169--51837504	171	2.0	171	98	0	654	26	18	23	31	1.98
51848888--51848923	18	1.9	19	88	5	56	41	0	19	38	1.52
51851312--51851350	8	4.9	8	84	9	53	10	10	0	79	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51851319--51851352	17	1.9	18	94	5	61	8	14	0	76	1.01
51851312--51851360	17	3.0	17	73	26	52	10	14	0	75	1.04
51859942--51859996	17	3.2	17	89	0	83	25	16	29	29	1.97
51866789--51866829	22	1.9	22	85	5	57	21	31	4	41	1.74
51874960--51875360	200	2.0	201	99	0	786	37	12	16	34	1.86
51876136--51876313	27	6.6	27	83	3	205	26	15	28	29	1.96
51876137--51876292	82	1.9	81	88	3	233	26	15	28	29	1.96
51876133--51876313	82	2.2	81	83	2	229	27	15	27	29	1.96
51881733--51881863	65	2.0	65	96	0	244	29	14	19	37	1.91
51882030--51882853	414	2.0	414	95	0	1495	28	18	26	26	1.98
51884487--51884711	79	2.8	80	81	11	264	26	22	26	24	2.00
51884487--51884711	40	5.7	40	87	5	271	26	22	26	24	2.00
51884487--51884711	119	1.9	120	82	9	291	26	22	26	24	2.00
51884540--51884736	79	2.5	79	82	9	199	27	20	26	24	1.99
51888090--51888162	15	4.9	15	76	6	76	19	15	9	56	1.66
51889675--51889707	13	2.6	13	90	4	50	48	12	0	39	1.40
51900493--51900601	37	2.9	37	95	0	191	26	31	19	22	1.98
51900750--51900931	48	3.7	50	84	7	257	30	26	6	36	1.81
51900747--51900930	98	1.9	98	89	4	293	30	26	5	36	1.80
51900901--51901093	47	4.1	47	87	1	271	25	29	11	33	1.92
51900901--51901093	93	2.1	94	87	1	271	25	29	11	33	1.92
51901015--51901094	25	3.3	25	66	16	69	30	27	8	33	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51906968--51907051	41	2.0	41	97	0	159	27	34	10	27	1.90
51909576--51909847	40	6.8	40	92	1	436	22	29	21	26	1.99
51917332--51917391	10	6.2	10	71	21	56	68	13	1	16	1.29
51917327--51917391	22	2.8	22	76	17	60	69	12	1	16	1.27
51917327--51917406	12	6.4	12	73	15	65	67	13	1	17	1.30
51917342--51917373	16	2.0	16	100	0	64	68	18	0	12	1.20
51919029--51919521	132	3.7	132	90	1	731	26	24	19	29	1.99
51919029--51919521	263	1.9	263	89	1	765	26	24	19	29	1.99
51919451--51919576	44	2.9	44	82	4	155	27	25	18	28	1.98
51930374--51930402	10	2.7	11	89	10	51	79	0	0	20	0.74

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205