Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  61124829

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   

This is table  16  of  205  ( 24568 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4958166--4958909
371
2.0
370
93
1
1267
38
16
18
26
1.92
4965304--4965329
12
2.2
12
100
0
52
38
15
15
30
1.88
4966936--4967117
91
2.0
89
87
5
258
45
11
14
29
1.80
4969336--4969399
22
3.0
22
83
4
85
37
3
20
39
1.68
4980783--4980824
3
14.7
3
87
9
61
69
0
0
30
0.89
4982281--4982878
132
4.5
131
91
1
883
26
22
20
30
1.98
4984130--4984172
14
3.0
14
80
12
52
11
23
0
65
1.25
4984132--4984178
20
2.3
20
85
3
58
12
21
0
65
1.25
4984140--4984195
7
7.7
7
78
13
51
12
19
0
67
1.22
4984149--4984187
20
2.0
20
89
0
60
12
20
0
66
1.24
4987030--4987069
19
2.0
20
85
4
55
47
7
20
25
1.75
4993000--4993048
22
2.3
21
79
6
55
44
0
2
53
1.12
4995036--4995072
17
2.2
17
90
0
56
48
21
10
18
1.78
4996329--4996391
24
2.7
23
72
16
58
49
1
4
44
1.33
5009678--5009713
17
2.1
17
100
0
72
16
16
16
50
1.79
5012043--5012069
2
13.5
2
100
0
54
0
48
0
51
1.00
5016906--5016939
3
11.3
3
100
0
68
0
35
0
64
0.94
5023898--5023957
21
2.8
22
76
16
72
36
25
18
20
1.94
5024413--5024446
18
1.9
18
88
5
52
32
14
0
52
1.42
5025068--5025099
3
10.7
3
100
0
64
65
0
0
34
0.93
5025106--5025130
13
1.9
13
100
0
50
56
0
0
44
0.99
5025222--5025259
14
2.4
17
87
12
55
52
0
0
47
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5025239--5025277
12
3.4
11
80
13
51
46
2
0
51
1.14
5026253--5026295
22
2.0
22
90
0
68
41
0
0
58
0.98
5031133--5031176
21
2.1
21
91
0
70
20
29
20
29
1.98
5041034--5041084
24
2.1
24
88
0
75
45
7
25
21
1.79
5045031--5045086
21
2.7
21
80
0
67
28
7
33
30
1.84
5047162--5047191
14
2.1
14
93
0
51
66
13
3
16
1.37
5048160--5048221
22
2.8
23
82
7
74
46
1
1
50
1.20
5048197--5048236
16
2.5
16
91
0
62
47
2
7
42
1.45
5048309--5048361
9
6.1
9
84
8
74
33
0
13
52
1.40
5048306--5048362
25
2.3
25
90
0
87
35
0
12
52
1.39
5048348--5048493
68
2.1
69
92
2
249
36
6
10
46
1.64
5048472--5048503
14
2.3
14
100
0
64
25
0
0
75
0.81
5059674--5059706
3
11.0
3
100
0
66
33
33
0
33
1.58
5067783--5067836
28
1.9
28
100
0
108
50
11
11
27
1.72
5072236--5072283
19
2.6
18
90
3
69
41
0
2
56
1.11
5072289--5072331
18
2.2
20
80
12
54
32
0
4
62
1.15
5072290--5072330
19
2.2
19
86
4
57
34
0
4
60
1.18
5081579--5081622
22
2.0
22
86
8
63
50
4
2
43
1.35
5081577--5081653
32
2.5
31
81
8
84
45
6
5
42
1.52
5082043--5082080
20
2.0
20
89
5
60
47
0
5
47
1.24
5086318--5086350
3
11.3
3
87
6
50
66
0
30
3
1.06
5087199--5087291
18
5.2
18
90
0
150
27
24
16
31
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5097470--5097494
7
3.6
7
100
0
50
52
0
0
48
1.00
5100141--5100184
16
2.6
16
79
10
52
47
4
0
47
1.22
5105370--5105426
30
1.9
29
82
10
71
47
7
0
45
1.30
5106688--5106734
23
2.0
24
83
4
60
46
0
2
51
1.13
5108768--5108795
4
7.0
4
100
0
56
50
0
0
50
1.00
5130998--5131022
8
3.1
8
100
0
50
76
12
12
0
1.04
5132936--5132977
11
3.8
11
80
0
57
21
14
9
54
1.68
5133356--5133402
24
1.9
25
83
12
62
42
10
8
38
1.70
5133456--5133644
93
2.0
93
98
0
369
40
5
5
48
1.48
5136336--5136474
75
1.9
74
82
8
174
25
19
19
35
1.95
5136574--5136766
64
3.1
61
71
8
190
46
17
15
21
1.83
5136575--5136821
125
2.0
121
86
8
342
46
16
13
22
1.82
5137204--5137257
18
3.1
17
75
15
56
59
0
1
38
1.08
5137204--5137254
19
2.8
18
77
19
52
58
0
1
39
1.09
5137213--5137311
45
2.2
46
85
7
132
59
1
2
37
1.16
5137479--5137523
21
2.1
21
84
8
56
26
8
4
60
1.46
5137587--5137642
20
3.1
18
87
7
69
30
1
1
66
1.12
5137651--5137822
88
1.9
89
83
8
226
33
6
19
40
1.79
5151433--5151466
17
1.9
18
94
5
61
17
0
0
82
0.67
5153739--5153780
18
2.3
18
84
8
50
33
0
0
66
0.92
5157968--5158012
21
2.2
21
84
7
58
46
22
22
8
1.79
5157981--5158082
21
4.9
21
73
4
71
44
17
20
17
1.87
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5157978--5158082
42
2.5
42
80
0
111
44
17
20
17
1.86
5158027--5158090
21
3.0
21
75
8
67
42
17
21
18
1.89
5158177--5158238
24
2.6
24
92
5
99
20
24
8
46
1.77
5181173--5181268
9
10.1
9
72
18
54
38
2
0
59
1.09
5181211--5181240
11
2.6
11
94
5
51
50
3
0
46
1.18
5181336--5181379
21
2.1
21
87
4
63
15
25
18
40
1.90
5183156--5183223
31
2.3
30
87
5
93
50
14
5
29
1.67
5185756--5185812
26
2.2
26
81
12
64
57
1
8
31
1.39
5187495--5188151
129
5.1
129
92
0
1057
30
21
17
30
1.96
5187523--5188152
44
14.7
43
67
9
239
30
22
16
30
1.96
5187495--5188149
256
2.5
257
91
1
1062
30
21
17
30
1.96
5200568--5200624
26
2.2
26
81
12
64
57
1
8
31
1.39
5200992--5201033
21
2.0
21
85
0
57
66
2
4
26
1.23
5202418--5202488
37
1.9
37
88
5
108
60
0
1
38
1.06
5202418--5202488
36
1.9
38
88
5
110
60
0
1
38
1.06
5202747--5202802
19
3.0
19
77
15
62
66
3
0
30
1.09
5202756--5202853
28
3.6
26
75
14
90
65
2
3
29
1.19
5203076--5203209
10
13.4
10
65
17
64
32
2
1
64
1.15
5203076--5203209
39
3.4
37
75
23
114
32
2
1
64
1.15
5203066--5203139
29
2.6
27
75
12
67
28
2
4
64
1.25
5203066--5203179
20
5.7
20
73
16
85
30
2
2
64
1.21
5203075--5203179
32
3.5
31
75
7
99
32
1
1
63
1.16
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5203306--5203579
88
3.1
86
82
7
322
32
11
20
36
1.88
5205601--5205651
6
8.5
6
100
0
102
50
15
0
33
1.44
5206442--5206654
101
2.1
102
82
1
257
30
17
14
37
1.90
5210062--5210105
21
2.1
21
91
8
72
29
4
31
34
1.78
5220549--5220582
17
2.1
17
88
5
52
70
0
0
29
0.87
5223655--5223681
11
2.5
11
100
0
54
25
0
0
74
0.83
5229145--5229361
76
2.8
77
76
10
210
34
4
10
50
1.57
5232262--5232290
15
1.9
15
100
0
58
51
0
0
48
1.00
5232382--5232410
15
1.9
15
100
0
58
51
0
0
48
1.00
5232192--5232550
120
3.0
120
99
0
700
34
10
19
36
1.85
5232502--5232530
15
1.9
15
100
0
58
51
0
0
48
1.00
5232900--5233352
156
2.9
157
90
4
706
31
10
7
50
1.64
5233228--5233483
131
1.9
133
88
1
381
28
10
7
53
1.63
5234155--5234241
41
2.2
40
81
8
104
39
1
0
59
1.05
5234868--5234956
11
8.0
11
72
7
72
29
3
3
64
1.26
5238863--5238913
20
2.8
17
78
16
57
54
0
0
45
0.99
5238862--5238913
17
2.9
18
78
15
63
53
0
0
46
1.00
5242368--5242443
29
2.6
29
95
0
134
28
11
10
48
1.73
5242397--5242447
15
3.5
15
69
15
52
25
13
11
49
1.76
5242640--5242692
27
2.0
26
82
14
63
9
28
1
60
1.38
5246245--5246286
16
2.6
16
75
14
50
45
0
0
54
0.99
5248784--5248882
52
1.9
52
95
0
180
28
33
13
25
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5252204--5252271
16
4.2
16
94
0
118
38
33
0
27
1.57
5259048--5259116
36
1.9
36
90
0
111
40
2
8
47
1.49
5266220--5266532
40
7.7
40
76
9
274
23
21
25
29
1.99
5266201--5266543
82
4.2
82
91
1
508
22
19
25
32
1.98
5266648--5267024
44
8.5
45
76
5
322
30
26
17
25
1.97
5266704--5267027
132
2.5
132
95
0
567
29
26
17
26
1.98
5274509--5274549
17
2.4
17
95
0
73
41
9
17
31
1.82
5275775--5275838
3
21.3
3
90
0
101
62
1
3
32
1.20
5275917--5276156
3
80.7
3
66
15
52
62
5
7
25
1.42
5275948--5276001
23
2.3
23
83
0
72
57
3
7
31
1.44

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205