genome.fa.s19.2.7.7.80.10.50.1000.127.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  61124829

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   

This is table  127  of  205  ( 24568 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38332701--38332764	33	1.9	33	83	0	83	25	20	23	31	1.98
38343662--38343735	28	2.6	28	100	0	148	28	36	27	8	1.85
38346677--38346745	26	2.6	26	82	17	88	21	14	14	49	1.79
38346677--38346745	27	2.6	27	84	13	90	21	14	14	49	1.79
38354808--38354849	14	3.0	14	82	0	57	42	16	9	30	1.80
38354773--38354839	34	1.9	35	87	3	100	44	13	10	31	1.77
38356630--38356733	50	2.1	50	88	0	154	27	22	30	19	1.98
38356630--38356761	50	2.6	50	84	2	149	28	21	29	20	1.98
38357028--38357082	12	4.6	12	78	13	51	56	3	23	16	1.56
38357029--38357082	20	2.7	19	83	11	63	57	3	24	14	1.54
38357053--38357094	16	2.6	16	96	0	75	61	0	26	11	1.30
38363392--38363425	15	2.3	15	89	0	50	23	8	23	44	1.81
38367715--38367755	18	2.3	18	86	0	55	12	14	9	63	1.52
38368527--38368867	171	2.0	171	96	0	628	29	20	19	29	1.97
38374114--38374225	58	1.9	58	88	5	170	41	2	5	50	1.39
38374114--38374246	58	2.2	59	83	13	166	40	2	6	50	1.41
38381448--38381487	14	2.8	15	81	11	57	52	0	5	42	1.23
38384343--38384393	22	2.3	21	80	9	57	35	1	5	56	1.35
38392258--38392344	45	1.9	45	92	0	147	24	22	34	18	1.96
38393518--38393652	3	44.3	3	67	8	58	57	7	5	28	1.49
38393579--38393644	18	3.8	18	78	7	66	56	9	4	30	1.51
38395934--38395986	20	2.7	20	87	0	79	28	20	28	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38398177--38398240	32	2.0	32	100	0	128	31	25	12	31	1.92
38402104--38402365	131	2.0	131	93	1	445	27	21	14	35	1.93
38403826--38403850	12	2.1	12	100	0	50	48	0	44	8	1.32
38408547--38408585	11	3.5	11	82	0	51	25	5	41	28	1.77
38417230--38417289	29	2.1	29	96	0	111	21	23	15	40	1.91
38435463--38435606	39	3.6	41	81	13	160	25	22	27	24	2.00
38435543--38435625	40	2.1	39	82	6	96	24	24	30	21	1.99
38444870--38444897	12	2.3	12	100	0	56	60	0	21	17	1.36
38449711--38449743	14	2.3	15	89	5	50	78	3	18	0	0.87
38456762--38456824	21	3.0	21	88	2	90	30	3	33	33	1.74
38461519--38461589	31	2.3	31	95	0	124	45	12	9	32	1.75
38461531--38461608	31	2.5	31	87	2	104	47	11	5	35	1.62
38462769--38463086	175	1.8	175	96	0	591	26	16	20	36	1.93
38468043--38468087	21	2.1	21	91	0	72	15	17	24	42	1.88
38468166--38468380	43	5.2	43	76	11	171	23	27	17	31	1.97
38468201--38468268	35	1.9	35	96	0	127	23	27	14	33	1.94
38468166--38468311	78	1.9	78	85	2	204	25	26	16	32	1.96
38470717--38470804	37	2.4	37	96	0	158	32	1	17	48	1.54
38470702--38470804	37	2.4	43	74	24	119	31	1	17	49	1.58
38470669--38470768	16	6.2	16	65	19	57	29	3	18	50	1.61
38470727--38470789	21	3.2	21	67	28	66	33	0	15	50	1.45
38470789--38470928	9	16.2	9	67	16	82	32	2	19	46	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38470778--38470865	41	2.1	41	85	0	113	32	2	20	44	1.64
38470837--38470902	34	1.9	34	87	0	96	31	3	18	46	1.64
38470778--38470928	25	6.2	24	71	19	100	31	1	19	46	1.62
38470924--38470952	12	2.4	12	100	0	58	41	0	10	48	1.37
38471347--38471377	15	2.1	15	94	5	55	77	6	9	6	1.12
38472373--38472592	84	2.6	83	85	9	261	33	20	17	28	1.96
38472418--38472592	84	2.1	84	93	2	298	33	20	17	29	1.95
38473056--38473302	90	2.9	81	82	11	314	42	25	2	29	1.68
38473202--38473417	102	2.1	103	84	5	285	41	29	0	27	1.62
38473365--38473451	33	2.6	33	77	12	88	36	39	1	22	1.62
38473427--38473463	7	5.6	7	87	12	60	32	51	0	16	1.45
38473412--38473463	26	2.0	26	84	0	68	32	46	0	21	1.52
38473574--38473619	21	2.1	22	88	4	67	45	26	0	28	1.54
38474080--38474755	114	6.0	113	84	6	840	28	24	21	25	1.99
38474080--38474721	219	2.9	222	87	4	850	28	24	21	25	1.99
38474080--38474728	333	1.9	336	87	4	959	28	24	21	25	1.99
38474827--38474851	12	2.1	12	100	0	50	32	36	24	8	1.84
38479367--38479498	40	3.3	40	88	4	196	28	27	20	24	1.99
38483899--38483946	24	2.0	24	95	0	87	27	8	20	43	1.80
38489013--38489059	24	1.9	25	91	4	78	27	19	6	46	1.74
38490755--38490801	24	1.9	25	91	4	78	27	19	6	46	1.74
38493276--38493583	156	2.0	156	92	0	508	27	13	18	40	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38495095--38495119	12	2.1	12	100	0	50	44	16	8	32	1.76
38500126--38500258	50	2.6	51	83	1	151	33	27	15	24	1.95
38500135--38500258	51	2.5	50	83	1	140	32	28	15	24	1.95
38502213--38502294	39	2.1	39	100	0	164	31	23	14	30	1.94
38507783--38507919	50	2.7	51	89	1	204	31	27	16	24	1.96
38514529--38514586	26	2.2	26	87	6	82	43	5	18	32	1.73
38522364--38522390	6	4.5	6	100	0	54	48	0	0	51	1.00
38533698--38533744	24	2.0	24	86	0	67	51	10	4	34	1.56
38536593--38536742	43	3.5	42	73	13	137	26	18	25	30	1.98
38537006--38537057	11	4.9	11	73	17	56	55	0	1	42	1.10
38537054--38537103	9	5.3	9	76	9	55	72	0	2	26	0.96
38537026--38537147	40	3.0	40	85	7	142	62	0	3	34	1.12
38537043--38537114	28	2.6	29	95	4	130	65	0	2	31	1.07
38539969--38540025	24	2.4	24	85	5	71	49	8	5	36	1.57
38539981--38540032	24	2.2	24	85	0	68	50	7	3	38	1.50
38543690--38543956	104	2.6	103	89	2	390	30	30	19	19	1.96
38544284--38544347	30	2.2	29	81	10	76	29	28	6	35	1.82
38544291--38544347	30	1.9	30	85	3	80	29	24	7	38	1.82
38545293--38545326	8	4.0	8	85	14	50	64	0	0	35	0.94
38545296--38545331	18	2.0	18	94	0	63	66	2	0	30	1.06
38545796--38545839	14	3.3	14	84	6	56	40	2	0	56	1.11
38545796--38545821	6	4.3	6	100	0	52	46	0	0	53	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38558551--38558588	14	2.9	13	88	11	60	0	28	2	68	1.03
38559498--38559535	5	7.6	5	87	0	58	23	15	0	60	1.35
38559499--38559535	10	3.7	10	92	0	65	24	13	0	62	1.31
38561269--38561355	37	2.3	37	78	11	104	39	10	8	42	1.69
38564332--38564366	9	3.9	9	100	0	70	45	0	0	54	0.99
38564417--38564459	20	2.2	20	82	0	50	30	2	6	60	1.35
38564814--38564897	19	4.4	19	73	5	71	19	22	26	32	1.97
38564804--38564897	38	2.5	38	83	0	116	21	24	23	30	1.99
38569938--38570139	33	5.6	33	73	19	170	21	18	28	32	1.97
38569971--38570183	33	5.5	41	68	19	161	22	16	27	33	1.95
38569934--38570217	75	3.8	75	91	0	451	22	17	27	32	1.96
38569934--38570217	151	1.9	151	90	0	453	22	17	27	32	1.96
38577357--38577409	27	2.0	27	92	0	88	18	22	32	26	1.97
38577388--38577628	33	6.7	33	72	17	178	21	18	27	31	1.97
38577421--38577557	42	3.5	42	73	17	148	22	16	28	32	1.95
38577384--38577590	75	2.8	75	93	0	351	22	16	28	32	1.96
38578935--38579051	35	3.3	35	81	1	126	14	10	31	43	1.79
38585846--38585926	3	26.3	3	74	12	67	30	2	2	64	1.20
38585842--38585937	10	9.1	10	73	15	70	30	3	3	63	1.25
38589119--38589216	43	2.3	43	92	0	160	20	27	31	20	1.97
38590614--38590677	24	2.6	26	80	9	73	39	18	20	21	1.93
38594604--38594628	2	12.5	2	100	0	50	48	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38597435--38597474	9	4.4	9	87	0	53	15	2	60	22	1.47
38603145--38603249	52	2.0	52	100	0	210	38	3	20	37	1.71
38603261--38603329	31	2.3	28	76	21	77	49	1	10	39	1.46
38605255--38605287	6	5.7	6	96	3	59	18	0	12	69	1.18
38605481--38605532	25	2.1	25	88	0	77	46	9	9	34	1.69
38607244--38607277	10	3.3	10	91	4	50	58	14	2	23	1.50
38608465--38608533	30	2.3	30	100	0	138	17	34	31	15	1.92
38608697--38608726	12	2.5	12	94	0	51	6	23	40	30	1.80
38612420--38612478	22	2.7	22	86	0	73	42	22	11	23	1.86
38612671--38612727	25	2.2	25	78	9	62	12	7	21	59	1.56

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205