genome.fa.s19.2.7.7.80.10.50.1000.181.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  61124829

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   

This is table  181  of  205  ( 24568 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53820038--53820255	54	4.1	55	88	8	324	37	17	16	28	1.92
53820234--53820268	14	2.5	14	90	0	52	60	2	17	20	1.49
53820356--53820605	85	2.8	87	80	11	294	36	18	18	26	1.94
53820202--53820626	192	2.3	191	81	10	515	39	18	16	26	1.91
53820516--53820551	18	2.0	18	88	0	54	66	5	11	16	1.40
53820356--53820612	93	2.9	88	81	10	301	37	18	18	25	1.93
53820570--53821177	193	3.2	192	97	0	1126	35	20	13	30	1.92
53821010--53821555	70	7.7	70	79	4	512	35	21	13	29	1.92
53821010--53821455	139	3.2	139	97	0	820	33	23	13	29	1.93
53829809--53829909	18	6.0	16	69	18	62	47	11	8	31	1.71
53829811--53829895	33	2.5	34	81	9	95	49	10	8	31	1.67
53829867--53830218	17	19.9	17	70	13	203	45	11	14	29	1.79
53829948--53829990	21	2.0	21	81	0	50	37	6	13	41	1.72
53830041--53830169	36	3.7	35	83	5	136	48	7	13	29	1.71
53829809--53830210	17	22.8	18	70	16	172	45	10	13	30	1.77
53830322--53830364	21	2.0	22	86	8	63	41	9	13	34	1.77
53830533--53830578	17	2.6	18	82	10	58	71	0	0	28	0.86
53830706--53830769	9	6.8	9	77	11	58	0	20	0	79	0.73
53830707--53830771	11	6.0	10	80	16	67	0	20	0	80	0.72
53830707--53830771	22	3.0	21	80	10	78	0	20	0	80	0.72
53831025--53831063	19	2.2	19	86	9	55	7	12	0	79	0.93
53831035--53831094	24	2.6	22	82	10	59	3	26	0	70	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53831035--53831108	14	5.5	13	76	14	53	2	29	0	67	1.04
53831037--53831105	35	2.0	35	85	0	93	2	30	0	66	1.06
53831482--53831592	30	3.7	29	77	12	91	45	2	23	28	1.67
53831497--53831592	30	3.2	30	85	2	131	44	3	23	28	1.68
53831822--53831904	33	2.5	33	76	7	87	50	18	13	18	1.78
53832818--53832860	11	3.7	11	76	11	50	65	0	2	32	1.06
53837873--53837917	19	2.3	20	84	3	56	55	4	0	40	1.20
53840921--53840966	18	2.5	20	77	22	57	78	2	13	6	1.04
53840959--53841004	21	2.1	22	88	4	67	69	4	23	2	1.17
53852916--53852940	3	8.3	3	100	0	50	0	36	32	32	1.58
53857382--53857430	19	2.5	20	76	10	55	63	6	8	22	1.44
53857601--53857690	10	8.6	10	70	20	60	37	0	0	62	0.96
53857639--53857706	22	3.0	22	76	18	77	42	0	0	57	0.98
53860035--53860093	25	2.3	27	80	13	72	32	25	23	18	1.97
53866518--53866543	13	2.0	13	100	0	52	23	30	23	23	1.99
53867323--53867365	21	2.0	21	90	0	68	25	20	30	23	1.99
53873462--53873538	24	3.2	24	83	9	95	15	23	24	36	1.94
53876578--53876636	22	2.6	22	86	7	75	35	6	1	55	1.36
53880639--53880668	3	10.0	3	100	0	60	33	0	0	66	0.92
53883229--53883268	21	1.9	21	89	0	62	47	5	10	37	1.59
53887145--53887183	20	2.0	20	84	0	51	64	10	7	17	1.48
53894207--53894278	36	2.0	36	97	0	135	20	27	16	34	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53895967--53896021	9	6.1	9	86	0	83	45	9	10	34	1.71
53895967--53896021	18	3.1	18	94	0	92	45	9	10	34	1.71
53896235--53896294	30	2.0	31	86	3	86	20	40	0	40	1.52
53896548--53896576	9	3.2	9	100	0	58	31	0	0	68	0.89
53898279--53898681	164	2.5	164	95	0	716	35	21	18	25	1.95
53905236--53905298	27	2.4	26	80	12	67	61	3	3	31	1.27
53910361--53910398	6	6.2	6	87	6	58	13	15	15	55	1.70
53910361--53910398	19	2.1	18	95	5	67	13	15	15	55	1.70
53911973--53912219	50	4.8	50	81	5	237	23	28	20	27	1.99
53919722--53919848	49	2.6	49	82	3	148	31	22	23	22	1.98
53922480--53922571	31	3.0	31	84	6	123	22	32	33	10	1.89
53922486--53922584	31	3.2	31	86	0	90	22	33	34	10	1.87
53924150--53924222	38	2.0	37	84	10	96	31	9	23	35	1.87
53925860--53925927	10	6.3	10	74	24	50	48	2	1	47	1.26
53926248--53926367	60	2.0	60	100	0	240	21	11	18	48	1.80
53928077--53928215	41	3.4	41	79	5	129	17	12	31	38	1.88
53928252--53928306	16	3.8	15	77	11	53	41	3	3	50	1.37
53928594--53928631	14	2.7	15	88	12	62	26	0	31	42	1.56
53928979--53929044	22	3.1	22	70	10	57	21	0	40	37	1.53
53929222--53929275	19	2.8	18	78	10	54	70	3	5	20	1.23
53929260--53929361	50	2.1	50	85	14	142	46	7	0	45	1.39
53930016--53930117	50	2.1	50	84	14	133	46	8	0	44	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53930016--53930117	47	2.1	48	84	14	129	46	8	0	44	1.41
53931216--53931242	14	1.9	14	100	0	54	29	14	7	48	1.71
53931459--53931502	22	2.0	22	95	0	79	31	13	15	38	1.87
53931883--53932063	54	3.4	53	79	13	151	48	12	2	37	1.54
53931995--53932019	12	2.1	12	100	0	50	52	16	0	32	1.44
53932007--53932239	9	26.9	9	64	21	79	45	20	2	30	1.64
53931975--53932023	20	2.4	21	86	10	66	46	16	2	34	1.58
53931992--53932117	54	2.3	54	83	5	148	46	17	3	32	1.64
53932060--53932194	63	2.2	63	86	4	166	47	22	2	27	1.65
53932071--53932217	25	6.0	25	65	19	60	44	22	2	29	1.66
53932106--53932210	16	6.7	15	72	14	70	45	22	2	28	1.67
53932154--53932235	41	2.0	41	87	0	119	46	21	0	31	1.52
53932185--53932262	25	3.3	25	80	8	92	44	19	0	35	1.51
53933995--53934048	21	2.6	21	90	0	90	44	18	31	5	1.73
53934392--53934525	43	3.1	43	87	5	166	27	20	27	24	1.99
53935754--53935795	18	2.5	17	85	14	52	66	2	0	30	1.04
53935737--53935814	25	3.0	25	81	14	70	61	1	1	35	1.12
53936730--53936813	30	2.8	30	82	10	84	40	0	2	57	1.12
53936762--53936801	21	1.9	21	94	0	71	40	0	2	57	1.12
53938820--53938855	12	3.0	12	100	0	72	50	0	33	16	1.46
53938795--53938847	27	2.0	27	85	14	74	49	0	33	16	1.47
53940106--53940168	31	2.0	32	87	3	92	19	15	7	57	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53940872--53940925	11	4.9	11	76	19	51	35	1	3	59	1.26
53940872--53940925	22	2.4	23	82	11	60	35	1	3	59	1.26
53960205--53960247	21	2.1	20	83	12	52	13	4	9	72	1.26
53970229--53970352	43	2.9	43	93	0	212	29	19	25	25	1.99
53972352--53972384	13	2.5	13	100	0	66	33	0	0	66	0.92
53977233--53977360	45	2.8	45	77	4	116	41	10	21	25	1.86
53977478--53977558	27	3.0	27	76	3	83	40	16	23	19	1.90
53987293--53987348	5	11.2	5	100	0	112	58	0	0	41	0.98
53996799--53996854	18	3.1	18	75	10	60	46	19	3	30	1.67
53997146--53997220	32	2.4	31	80	14	91	41	16	6	36	1.74
54001584--54001628	24	1.9	24	90	4	74	31	17	6	44	1.75
54011212--54011255	22	2.0	22	100	0	88	36	18	13	31	1.90
54014417--54014455	19	2.1	19	95	0	69	35	35	20	7	1.81
54029593--54029628	17	2.1	17	89	0	54	41	22	8	27	1.82
54037448--54037789	50	6.9	50	81	8	378	21	27	20	30	1.98
54039137--54039181	24	1.9	23	86	4	63	31	20	2	46	1.62
54059872--54059991	39	3.1	39	79	11	129	34	5	32	27	1.81
54059907--54059973	18	3.6	18	69	11	62	29	7	34	28	1.85
54059970--54060006	18	2.1	18	90	10	58	45	5	29	18	1.72
54063692--54063764	30	2.4	30	97	0	137	20	31	27	20	1.97
54069184--54069334	5	30.2	5	100	0	302	59	0	0	40	0.97
54077468--54077569	17	5.9	17	74	2	78	43	20	7	28	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54078562--54078651	33	2.6	34	86	6	112	46	13	4	35	1.63
54086394--54086572	85	2.1	85	100	0	358	37	8	27	26	1.85
54094447--54094532	30	3.0	29	85	12	117	43	6	24	25	1.79
54094445--54094533	25	3.1	30	85	12	125	41	6	25	25	1.80
54096328--54096872	271	2.0	271	99	0	1081	30	12	25	31	1.93
54099383--54099462	15	5.3	15	71	11	74	45	7	22	25	1.78
54099376--54099462	30	2.9	30	96	0	156	45	6	22	24	1.76
54109294--54109404	56	2.0	56	96	0	204	32	16	7	44	1.75
54116082--54116125	23	1.9	23	95	0	79	20	31	4	43	1.72
54120994--54121030	14	2.7	15	84	16	53	51	0	13	35	1.41

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205