genome.fa.s19.2.7.7.80.10.50.1000.123.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  61124829

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   

This is table  123  of  205  ( 24568 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36886473--36886518	22	2.1	22	84	11	60	32	0	2	65	1.05
36886463--36886545	29	2.9	29	79	13	91	39	0	2	57	1.12
36894167--36894203	18	2.1	18	100	0	74	27	10	5	56	1.55
36897918--36897971	22	2.4	22	87	3	72	70	5	24	0	1.08
36897927--36897960	15	2.4	14	90	5	50	73	2	23	0	0.97
36905418--36905762	40	8.6	40	89	3	376	25	28	21	24	1.99
36905694--36905771	40	1.9	41	82	10	97	26	28	20	24	1.99
36912391--36912430	13	3.1	13	100	0	80	47	7	37	7	1.60
36919728--36919822	32	3.1	30	79	10	102	61	2	2	34	1.20
36919755--36919805	20	2.5	20	70	0	57	68	0	1	29	1.00
36919766--36919837	29	2.5	29	89	8	112	63	0	2	33	1.08
36919776--36919889	41	2.8	41	84	11	162	64	0	3	32	1.11
36926912--36926961	22	2.3	22	92	0	82	40	6	24	30	1.79
36933292--36933339	10	4.6	10	80	10	51	62	0	0	37	0.95
36942123--36942159	18	2.0	19	89	5	58	51	0	43	5	1.24
36942485--36942521	18	2.0	19	89	5	58	51	0	43	5	1.24
36941848--36942530	362	1.9	362	92	0	1152	38	16	18	26	1.92
36942809--36943566	383	2.0	383	100	0	1516	33	13	12	40	1.82
36951824--36951884	32	1.9	32	89	0	95	37	24	13	24	1.91
36951849--36951999	43	3.5	43	82	1	187	31	24	15	28	1.96
36951849--36952019	43	4.0	43	78	6	150	28	24	18	28	1.98
36952068--36952101	16	2.1	16	88	0	50	55	8	0	35	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36953298--36953376	21	3.8	21	94	0	140	3	44	17	34	1.67
36953298--36953390	21	4.4	21	90	0	60	7	43	16	33	1.76
36953298--36953411	42	2.7	42	84	0	111	7	42	15	33	1.76
36953423--36953548	66	1.9	66	88	6	193	15	26	17	41	1.88
36953423--36953571	66	2.3	66	84	4	185	14	25	18	41	1.88
36958984--36959094	9	13.2	9	74	14	103	32	1	18	47	1.59
36958984--36959094	25	4.4	25	87	0	159	32	1	18	47	1.59
36959008--36959090	16	5.1	16	76	13	80	31	2	18	48	1.61
36958984--36959094	50	2.2	50	91	0	177	32	1	18	47	1.59
36959143--36959205	12	5.2	12	72	1	54	28	3	17	50	1.61
36959374--36959448	29	2.6	29	95	0	132	29	2	21	46	1.65
36959340--36959451	16	7.2	16	63	15	65	30	3	22	43	1.70
36960212--36960252	19	2.1	20	95	4	75	53	0	0	46	1.00
36960869--36960930	29	2.1	29	91	5	99	53	24	4	17	1.63
36962298--36962327	13	2.3	13	94	0	51	13	10	0	76	1.01
36962300--36962346	19	2.5	19	75	3	51	14	6	2	76	1.08
36962685--36962738	23	2.4	23	87	3	74	29	48	1	20	1.60
36963183--36963216	15	2.2	16	94	5	61	47	32	0	20	1.51
36963504--36963698	41	4.8	41	77	6	189	29	23	24	23	1.99
36963740--36963873	40	3.4	40	80	6	132	20	20	21	37	1.95
36967303--36967327	4	6.2	4	100	0	50	24	0	0	76	0.80
36967569--36967705	15	9.5	14	76	7	53	43	35	1	19	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36967562--36967705	7	20.0	7	69	11	58	43	34	1	20	1.60
36967655--36967705	15	3.4	15	97	0	93	45	33	0	21	1.52
36967729--36967773	14	3.2	14	75	12	56	51	28	0	20	1.48
36967883--36967915	15	2.2	15	94	0	57	39	33	0	27	1.57
36967877--36967951	22	3.4	22	78	14	75	36	38	0	25	1.56
36967903--36967944	14	2.9	14	83	13	50	30	45	0	23	1.53
36967920--36967976	21	2.7	21	83	5	62	38	36	0	24	1.56
36968350--36968464	41	2.8	41	86	1	158	31	27	19	21	1.97
36972388--36972636	27	9.2	27	80	1	239	41	17	16	23	1.89
36972396--36972634	81	3.0	81	80	3	275	41	17	16	24	1.89
36972792--36972859	26	2.6	26	80	2	64	16	20	23	39	1.91
36972814--36972885	26	2.8	26	86	0	99	16	18	22	43	1.88
36973005--36973061	28	2.1	27	90	3	87	22	26	26	24	2.00
36973812--36973883	27	2.7	26	80	4	90	33	15	26	25	1.95
36986156--36986180	3	8.3	3	100	0	50	68	0	0	32	0.90
36989532--36989570	19	2.1	19	85	0	51	28	17	2	51	1.59
36990619--36990746	36	3.6	35	78	8	107	43	31	11	13	1.80
36990619--36990710	35	2.6	36	79	8	107	43	31	10	14	1.79
36997574--36997686	35	3.2	35	82	5	111	43	26	12	17	1.85
36998761--36998790	12	2.5	12	94	0	51	6	20	40	33	1.78
36999599--36999766	84	2.0	84	97	0	318	35	14	19	30	1.92
37003798--37003901	52	2.0	52	100	0	208	30	13	11	44	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37004977--37005023	24	2.0	24	95	0	85	29	17	14	38	1.89
37006635--37006659	8	3.1	8	100	0	50	24	0	0	76	0.80
37007086--37007123	15	2.6	14	84	15	51	39	15	5	39	1.70
37011435--37011473	14	2.8	14	88	0	51	43	2	0	53	1.14
37014388--37014454	18	3.8	18	71	13	59	43	7	14	34	1.74
37016122--37016171	12	4.0	13	75	15	52	36	0	40	24	1.55
37016826--37016968	27	5.3	27	83	0	189	42	22	16	18	1.89
37020282--37020615	55	6.0	56	85	4	372	43	15	10	30	1.80
37020313--37020615	113	2.7	112	86	4	389	44	14	9	31	1.78
37021434--37021478	18	2.4	18	81	3	54	13	2	42	42	1.56
37029283--37029487	27	7.9	27	74	13	146	32	13	19	34	1.90
37029283--37029488	54	3.9	53	71	14	167	32	13	19	34	1.90
37032384--37032523	39	3.6	39	76	10	133	31	22	17	27	1.97
37033333--37033403	22	3.2	22	78	11	83	2	25	2	69	1.16
37033851--37033885	3	11.7	3	100	0	70	68	0	0	31	0.90
37037330--37037438	41	2.7	41	81	5	114	20	21	26	32	1.97
37046670--37046699	15	1.9	16	93	6	53	66	3	6	23	1.30
37049266--37049331	24	2.7	24	80	2	78	27	22	21	28	1.99
37049270--37049383	25	4.6	25	69	8	81	31	21	21	25	1.98
37063143--37063177	3	11.7	3	100	0	70	34	0	34	31	1.58
37064866--37065054	51	3.7	51	83	4	195	25	17	27	29	1.98
37078960--37079144	79	2.3	82	84	7	238	25	27	22	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37078941--37079144	40	5.1	40	82	8	238	25	27	22	25	2.00
37086910--37087132	79	2.8	78	83	7	272	24	27	22	25	2.00
37086910--37087132	39	5.7	40	87	6	280	24	27	22	25	2.00
37091899--37091965	28	2.4	28	75	2	73	32	20	25	20	1.97
37092177--37092492	32	9.9	32	84	0	389	39	18	19	22	1.92
37092564--37092877	27	11.7	27	83	2	391	25	21	20	33	1.97
37092856--37092908	27	2.0	27	92	0	88	24	18	20	35	1.95
37092866--37092953	27	3.3	26	81	10	97	25	13	18	43	1.86
37096025--37096089	22	3.0	21	75	4	67	44	16	21	16	1.86
37096106--37096347	32	7.6	32	86	0	286	39	21	19	19	1.92
37096498--37096572	23	3.2	23	79	5	69	48	25	4	22	1.68
37096508--37096574	23	2.9	23	81	2	71	47	23	4	23	1.70
37096587--37097037	27	16.7	27	85	0	551	24	20	19	35	1.96
37097016--37097077	27	2.3	27	91	0	97	17	12	25	43	1.85
37097029--37097083	27	2.0	27	85	0	74	23	14	21	40	1.90
37101006--37101037	16	2.0	17	88	11	50	37	0	6	56	1.25
37101339--37101386	20	2.4	20	86	6	62	6	31	20	41	1.77
37103963--37104009	20	2.3	20	85	0	67	21	12	36	29	1.91
37105680--37105785	48	2.2	48	85	9	137	14	24	1	59	1.45
37106833--37106887	23	2.3	24	87	9	78	5	14	5	74	1.18
37106881--37106905	11	2.3	11	100	0	50	16	0	8	76	1.02
37116751--37116782	14	2.3	14	100	0	64	21	12	6	59	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37117206--37117283	39	2.0	39	100	0	156	33	25	17	23	1.96
37121559--37121809	69	3.7	67	81	4	279	30	9	14	45	1.76
37125294--37125362	26	2.7	26	81	0	84	27	26	21	24	1.99
37129308--37129378	25	2.9	25	87	2	90	38	16	15	29	1.90
37129333--37129440	25	4.3	25	81	4	112	30	22	21	25	1.98
37142690--37142928	50	4.7	50	81	3	237	27	21	28	23	1.99
37150290--37150392	39	2.7	39	78	1	109	40	24	6	28	1.80
37161570--37161673	38	2.7	39	83	3	129	29	16	23	30	1.96
37165504--37165714	43	4.9	43	84	2	210	25	18	25	31	1.98
37165527--37165754	43	5.3	43	87	2	273	23	17	25	32	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205