genome.fa.s19.2.7.7.80.10.50.1000.137.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  61124829

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   

This is table  137  of  205  ( 24568 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41574794--41574866	18	3.9	19	76	21	75	36	8	0	54	1.30
41574815--41574860	18	2.5	19	89	3	76	36	6	0	56	1.25
41574994--41575050	30	1.9	29	89	3	87	31	14	3	50	1.59
41578821--41578907	12	7.5	11	82	10	77	80	0	19	0	0.71
41578821--41578906	26	3.5	24	78	10	84	80	0	19	0	0.72
41578821--41578906	16	5.3	16	81	13	88	80	0	19	0	0.72
41578846--41578908	7	9.0	7	77	20	53	80	0	19	0	0.70
41578821--41578907	28	3.1	27	77	19	90	80	0	19	0	0.71
41580222--41580994	50	15.5	50	67	10	319	33	24	20	22	1.97
41580214--41581434	100	12.3	100	85	1	1264	33	22	20	23	1.97
41581187--41581485	49	6.1	48	69	8	210	34	22	19	24	1.97
41581263--41581555	145	2.0	148	82	6	362	33	23	19	23	1.97
41580519--41581542	199	5.2	194	78	7	464	33	22	20	23	1.97
41581690--41581909	51	4.7	48	68	17	149	34	17	17	30	1.94
41581671--41581993	136	2.4	136	96	1	585	35	17	18	28	1.93
41582558--41582584	13	2.1	13	100	0	54	25	44	7	22	1.79
41583735--41583781	18	2.5	19	89	3	78	36	6	0	57	1.24
41583915--41583971	30	1.9	29	89	3	87	31	14	3	50	1.59
41586980--41587006	4	6.8	4	100	0	54	77	0	22	0	0.76
41588629--41589756	50	22.7	50	69	8	559	31	23	22	22	1.98
41588620--41589648	100	10.4	99	87	1	1256	31	23	22	22	1.98
41590995--41591046	26	2.0	26	84	0	68	61	3	0	34	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41591802--41591855	18	2.7	19	86	13	74	37	7	0	55	1.28
41591799--41591849	18	2.7	19	87	6	77	37	5	0	56	1.23
41591983--41592039	30	1.9	29	89	3	87	31	14	3	50	1.59
41598531--41598621	36	2.5	37	85	5	114	37	20	16	25	1.93
41600352--41600549	98	2.0	98	93	0	333	43	15	17	23	1.86
41606083--41606124	22	2.0	21	95	4	75	35	14	19	30	1.91
41608789--41608862	27	2.8	27	80	10	89	28	16	8	47	1.75
41611034--41611090	27	2.1	27	100	0	114	36	3	14	45	1.61
41612269--41612395	42	3.0	42	81	5	150	19	22	16	40	1.90
41612339--41612400	21	3.0	21	80	0	79	16	25	17	40	1.90
41612248--41612381	63	2.1	62	79	1	142	19	23	16	40	1.91
41629398--41629439	22	1.9	22	90	0	66	38	9	14	38	1.78
41629632--41629676	23	2.0	22	83	12	56	40	11	2	46	1.52
41635703--41635885	79	2.3	81	82	9	216	24	27	22	25	2.00
41635682--41635885	40	5.1	40	80	8	220	24	27	22	25	2.00
41642049--41642345	65	4.6	65	77	8	264	42	11	16	29	1.83
41646262--41646304	22	2.0	22	81	9	52	39	4	2	53	1.34
41648689--41649391	23	30.0	22	70	14	327	39	17	14	28	1.89
41648689--41649392	93	7.5	95	94	1	1208	39	17	14	28	1.89
41648689--41649392	188	3.7	188	94	1	1223	39	17	14	28	1.89
41649618--41649802	23	8.0	23	72	10	90	38	16	15	28	1.90
41649649--41649805	23	6.7	24	71	9	101	38	17	15	28	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41649222--41649997	388	2.0	388	98	0	1516	40	17	12	29	1.86
41649610--41649798	93	2.0	93	95	0	342	39	17	15	28	1.90
41650002--41651002	498	2.0	499	99	0	1986	41	19	7	31	1.79
41651027--41651124	28	3.5	28	84	0	97	30	30	11	27	1.91
41665622--41665831	40	5.3	39	87	5	233	24	21	28	25	1.99
41665569--41665831	120	2.2	120	81	4	300	25	21	27	25	1.99
41665622--41665866	80	3.1	80	81	3	228	25	21	28	24	1.99
41668323--41668722	47	8.5	47	79	3	432	40	17	14	27	1.88
41668306--41668722	23	17.7	23	73	11	312	41	17	14	27	1.88
41668306--41668697	93	4.2	93	92	2	631	40	17	14	27	1.88
41669443--41669565	28	4.4	28	88	0	174	31	27	11	29	1.91
41670273--41670405	50	2.7	50	89	0	185	27	22	27	22	1.99
41670667--41670697	16	1.9	16	93	0	53	51	6	22	19	1.69
41670668--41670713	20	2.3	20	84	0	65	56	2	23	17	1.52
41679028--41679072	23	2.0	23	95	0	81	42	11	4	42	1.60
41679029--41679078	23	2.2	23	88	0	73	40	12	8	40	1.72
41704706--41705800	367	3.0	366	94	0	1940	21	20	23	34	1.97
41713575--41713645	26	2.7	26	82	4	90	35	11	15	38	1.83
41720637--41720681	23	2.0	21	84	16	56	26	26	20	26	1.99
41726001--41726058	25	2.3	25	84	0	80	22	12	29	36	1.90
41726013--41726061	25	2.0	25	95	0	89	22	8	32	36	1.84
41729549--41729623	26	2.9	26	86	2	107	34	20	22	22	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41731976--41732053	38	2.1	38	95	0	138	50	7	14	28	1.70
41732477--41732501	13	1.9	13	100	0	50	44	8	16	32	1.76
41732885--41732935	20	2.7	19	80	17	61	43	0	1	54	1.11
41737134--41737374	32	7.2	33	83	8	299	17	23	17	41	1.90
41737134--41737371	67	3.6	67	96	0	422	18	23	17	41	1.90
41740172--41740216	20	2.1	22	84	12	58	13	11	8	66	1.44
41746739--41746817	29	2.7	30	80	13	101	29	30	16	24	1.96
41754614--41754681	29	2.3	29	80	5	75	29	32	11	26	1.92
41754784--41754862	29	2.7	30	78	13	92	30	30	15	24	1.95
41756375--41756429	28	2.0	27	82	10	67	38	0	12	49	1.41
41761437--41761461	7	3.6	7	100	0	50	28	24	0	48	1.52
41768947--41768994	23	2.1	22	81	14	53	35	14	2	47	1.56
41769135--41769318	51	3.6	50	71	5	156	30	27	17	23	1.97
41771930--41772011	42	2.0	42	85	4	112	30	24	14	30	1.95
41774210--41774238	10	3.0	10	95	5	51	72	10	6	10	1.28
41778347--41778526	27	6.6	27	82	5	182	30	27	15	27	1.96
41778347--41778526	55	3.3	55	81	5	202	30	27	15	27	1.96
41778370--41778525	82	1.9	81	86	3	224	30	27	15	26	1.96
41786510--41786687	27	6.6	27	84	3	205	29	28	15	26	1.96
41786531--41786686	82	1.9	81	88	3	233	29	28	15	26	1.96
41787172--41787197	12	2.2	12	100	0	52	42	0	7	50	1.31
41790563--41790665	42	2.4	43	79	11	104	31	24	18	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41804637--41804745	43	2.5	43	86	5	141	39	24	10	25	1.87
41810593--41810684	48	1.9	48	86	0	130	32	23	15	28	1.95
41818486--41818510	13	1.9	13	100	0	50	16	36	40	8	1.77
41819142--41819181	21	1.9	21	94	0	71	27	10	0	62	1.27
41826666--41826799	48	2.8	47	79	5	126	32	22	17	28	1.96
41826643--41826886	43	5.4	44	74	9	154	30	24	15	29	1.96
41829887--41829990	24	4.4	23	77	9	95	24	24	18	33	1.97
41832661--41832875	45	4.9	45	75	6	158	25	17	26	31	1.97
41832957--41833034	38	2.1	38	100	0	156	42	10	20	26	1.84
41835845--41835939	46	2.1	46	100	0	190	40	6	14	38	1.72
41842865--41842902	19	2.0	20	84	5	51	57	0	0	42	0.98
41843418--41843501	19	4.5	20	69	19	65	59	3	0	36	1.15
41843432--41843495	18	3.4	19	79	14	71	59	4	0	35	1.18
41843418--41843501	37	2.2	37	81	6	98	59	3	0	36	1.15
41844259--41844339	38	2.1	39	84	11	105	56	4	1	37	1.29
41844457--41844508	13	4.0	13	74	18	54	32	0	0	67	0.91
41851085--41851140	17	3.4	16	79	16	62	55	0	1	42	1.10
41854173--41854273	37	2.7	37	89	0	148	25	32	17	23	1.97
41858239--41858395	42	3.6	42	73	13	136	24	19	28	27	1.98
41862184--41862237	25	2.1	27	83	16	71	62	5	3	27	1.34
41865727--41865814	35	2.5	35	92	0	140	19	12	29	38	1.88
41875506--41875624	59	2.0	59	80	6	134	20	11	27	40	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41879047--41879076	14	2.1	14	93	0	51	63	6	6	23	1.43
41881236--41881531	50	5.9	50	75	5	238	27	16	24	32	1.96
41881291--41881476	101	1.8	101	83	0	246	27	18	23	30	1.98
41885824--41886039	48	4.5	48	81	2	245	26	27	17	27	1.98
41885824--41886039	96	2.2	97	88	1	308	26	27	17	27	1.98
41888432--41888489	20	2.9	20	97	0	107	34	12	20	32	1.90
41888436--41888489	11	5.3	11	70	17	53	35	12	20	31	1.90
41888542--41888661	23	5.1	23	90	4	186	30	18	20	30	1.96
41888541--41888661	47	2.6	47	94	0	206	30	18	20	30	1.96
41888541--41888682	24	6.0	24	88	5	200	29	19	21	29	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205