genome.fa.s19.2.7.7.80.10.50.1000.167.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  61124829

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   

This is table  167  of  205  ( 24568 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49737884--49738116	46	5.2	46	68	11	149	26	21	22	30	1.99
49737819--49738142	134	2.4	135	93	3	564	27	20	22	28	1.99
49737819--49738190	134	2.8	132	87	7	513	28	20	22	28	1.98
49738192--49738303	42	2.7	42	86	6	149	31	25	21	22	1.98
49739038--49739068	6	5.3	6	96	3	55	16	12	0	70	1.16
49740170--49740203	15	2.3	15	89	0	50	17	14	8	58	1.61
49742868--49742923	29	1.9	29	100	0	112	51	21	7	19	1.70
49747203--49747266	32	2.0	33	87	3	94	35	12	15	35	1.85
49747329--49747395	26	2.6	26	74	6	66	32	2	2	61	1.26
49761006--49761095	46	2.0	46	82	4	110	32	18	13	35	1.90
49767270--49767411	60	2.3	61	80	4	171	38	16	4	40	1.70
49769760--49769791	15	2.2	15	94	5	57	56	6	15	21	1.62
49777511--49777561	26	2.0	25	96	0	84	37	23	21	15	1.92
49785643--49785672	5	6.0	5	100	0	60	80	0	0	20	0.72
49785635--49785676	15	2.8	16	89	10	70	78	0	4	16	0.91
49788393--49788562	93	1.8	94	82	6	220	17	10	20	52	1.73
49788845--49788949	33	3.2	33	91	0	174	46	8	12	32	1.72
49789488--49789518	3	10.3	3	100	0	62	35	0	0	64	0.94
49804033--49804226	27	7.1	27	89	1	244	39	23	16	20	1.92
49804593--49804654	28	2.2	28	85	2	81	24	20	22	32	1.98
49804619--49804682	33	1.9	33	81	6	76	23	23	25	28	2.00
49808494--49808525	3	10.7	3	100	0	64	68	31	0	0	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49808524--49808558	3	11.7	3	100	0	70	68	0	0	31	0.90
49808856--49808917	31	2.0	31	96	0	115	43	14	9	32	1.78
49815844--49815889	22	2.0	23	84	12	60	36	0	6	56	1.25
49817329--49817380	25	2.1	24	89	3	77	15	23	23	38	1.92
49824023--49824120	49	2.0	49	97	0	187	18	15	20	45	1.85
49832251--49832378	51	2.5	51	88	3	177	28	14	27	29	1.95
49834551--49834702	42	3.6	42	77	5	128	43	15	25	16	1.86
49834574--49834626	21	2.5	21	75	0	61	41	18	24	15	1.89
49838382--49838435	27	2.0	27	92	0	90	31	20	12	35	1.90
49842208--49842335	68	1.9	68	86	0	184	24	11	33	30	1.91
49849428--49849454	6	4.5	6	100	0	54	14	18	0	66	1.25
49851553--49851622	31	2.3	31	84	0	86	40	12	12	34	1.82
49854637--49854682	20	2.2	21	85	14	60	26	2	6	65	1.28
49856867--49856926	11	5.3	11	77	16	52	38	1	1	58	1.18
49856867--49856912	22	2.1	22	88	8	67	39	2	2	56	1.24
49858584--49858705	33	3.8	32	78	10	126	44	6	0	48	1.34
49858584--49858692	31	3.4	32	78	9	100	45	5	0	47	1.32
49858584--49858711	64	2.0	64	84	6	170	44	6	0	48	1.33
49859105--49859147	20	2.2	19	83	4	50	46	0	4	48	1.22
49866296--49866324	6	4.8	6	100	0	58	0	68	0	31	0.89
49869860--49870152	120	2.4	120	94	2	500	41	3	4	50	1.39
49869985--49870026	15	2.9	15	82	10	52	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49870105--49870146	15	2.9	15	82	10	52	47	0	0	52	1.00
49874826--49874869	19	2.3	18	81	11	52	47	20	2	29	1.62
49875879--49875946	21	3.2	21	82	0	82	16	26	30	26	1.96
49877658--49877853	97	2.0	97	97	0	374	30	10	32	27	1.90
49878315--49878344	15	1.9	16	93	6	53	16	0	3	80	0.85
49878852--49878886	18	2.0	17	88	5	52	37	25	17	20	1.94
49878994--49879049	21	2.7	21	85	0	67	21	21	23	33	1.97
49884296--49884337	13	3.2	13	83	6	50	38	14	0	47	1.44
49884381--49884574	27	7.3	26	76	12	135	33	18	3	44	1.67
49884441--49884574	40	3.3	40	91	0	223	35	17	2	44	1.62
49884383--49884537	67	2.3	67	81	4	179	33	18	3	44	1.68
49884369--49884574	13	15.5	13	70	12	123	33	17	3	45	1.67
49884632--49884695	25	2.6	25	84	0	92	34	26	14	25	1.94
49889484--49889523	18	2.3	18	86	4	64	42	5	0	52	1.23
49889505--49889572	35	2.0	34	83	11	86	36	10	2	50	1.52
49890046--49890188	72	2.0	72	94	0	250	28	18	18	34	1.95
49890937--49890976	20	2.0	20	85	4	55	32	2	5	60	1.32
49905210--49905241	14	2.1	16	88	11	50	28	12	15	43	1.83
49905909--49905949	17	2.5	17	80	7	50	68	2	12	17	1.31
49906697--49906750	26	2.1	26	85	0	72	31	12	9	46	1.74
49906768--49906817	20	2.5	21	84	15	70	38	8	0	54	1.30
49907378--49907593	107	2.0	107	94	0	378	30	17	17	34	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49908864--49908898	18	1.9	18	88	0	52	17	5	11	65	1.43
49913119--49913158	21	1.9	21	94	0	71	17	35	22	25	1.95
49919863--49919896	5	7.0	5	96	3	61	20	0	0	79	0.73
49923014--49923123	55	2.0	55	94	0	193	35	14	32	17	1.90
49932073--49932321	44	5.8	43	72	14	185	30	20	22	26	1.98
49935126--49935164	5	8.0	5	97	2	71	20	0	0	79	0.73
49958091--49958168	36	2.2	36	81	9	88	48	1	10	39	1.45
49970470--49970527	17	3.4	17	68	17	57	46	12	22	18	1.82
49970468--49970536	34	2.0	34	100	0	138	43	11	23	21	1.85
49972984--49973050	34	1.9	35	93	3	118	32	5	11	49	1.64
49981462--49981622	51	3.3	50	85	9	217	29	23	14	31	1.95
49981514--49981628	44	2.6	44	94	0	194	28	23	16	31	1.96
49982913--49982940	12	2.3	12	100	0	56	25	17	7	50	1.72
49985473--49985580	55	2.0	55	98	0	207	42	24	5	27	1.76
49990651--49990753	43	2.4	44	85	3	138	27	20	23	29	1.99
50019559--50019595	6	6.0	6	90	3	56	35	48	16	0	1.46
50021662--50021723	21	3.0	20	76	9	54	61	6	3	29	1.37
50021773--50021824	18	2.9	18	100	0	104	53	11	11	23	1.69
50022200--50022263	32	2.0	32	96	0	119	46	15	20	17	1.83
50023454--50023484	13	2.5	13	94	5	55	41	12	0	45	1.42
50025992--50026130	31	4.5	32	76	15	141	44	11	19	24	1.83
50025937--50026130	91	2.1	92	85	4	268	43	13	20	22	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50034631--50034707	27	2.9	27	88	0	109	20	28	25	24	1.99
50034797--50034843	18	2.9	17	78	18	55	70	0	23	6	1.10
50034835--50034881	23	2.0	23	100	0	94	40	0	8	51	1.33
50038927--50038960	3	11.7	3	87	6	52	0	29	0	70	0.87
50039112--50039170	31	1.9	31	85	0	82	16	35	28	18	1.93
50044917--50044941	13	1.9	13	100	0	50	24	8	0	68	1.16
50045640--50045708	22	3.1	22	78	17	72	26	8	2	62	1.39
50045997--50046091	38	2.5	37	78	13	97	37	12	0	49	1.41
50051913--50052149	119	2.0	119	99	0	465	52	11	11	23	1.71
50054136--50055296	87	13.3	86	86	4	1125	30	24	15	30	1.95
50069954--50069978	7	3.6	7	100	0	50	28	0	0	72	0.86
50076756--50076812	21	2.7	21	86	2	69	73	7	7	12	1.23
50077270--50077440	91	1.9	91	82	4	220	33	7	14	44	1.74
50079966--50080015	24	2.1	23	92	3	82	2	14	10	74	1.16
50080548--50080609	31	2.0	31	96	0	115	41	16	11	30	1.83
50080995--50081333	186	1.8	184	85	3	484	43	7	23	25	1.79
50082981--50083020	18	2.1	20	90	9	66	47	0	0	52	1.00
50084779--50084815	11	3.5	11	89	10	51	27	5	0	67	1.12
50084772--50084895	39	3.2	40	77	13	109	36	4	0	59	1.16
50084817--50084865	11	4.7	11	72	23	52	42	2	0	55	1.11
50084809--50084880	30	2.4	30	97	0	135	36	4	0	59	1.17
50090650--50090726	39	2.0	39	94	0	136	35	27	16	20	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50094689--50094911	40	5.6	40	82	3	218	25	28	21	24	1.99
50094843--50094920	40	1.9	41	82	10	97	26	28	21	23	1.99
50098622--50098666	21	2.1	21	83	0	54	33	35	8	22	1.85
50098754--50098808	28	2.0	28	88	0	83	27	20	27	25	1.99
50098765--50098813	14	3.5	14	77	0	62	24	18	28	28	1.98
50098752--50098812	7	8.7	7	75	0	50	29	18	27	24	1.98
50106455--50106628	32	5.2	33	82	8	199	17	22	17	41	1.89
50106455--50106625	67	2.6	67	91	0	270	18	22	17	41	1.90
50106909--50106933	13	1.9	13	100	0	50	8	0	24	68	1.16
50108722--50108828	41	2.6	41	88	5	146	27	19	22	30	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205