genome.fa.s19.2.7.7.80.10.50.1000.102.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  61124829

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   

This is table  102  of  205  ( 24568 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30052014--30052194	50	3.7	50	85	1	222	21	29	22	26	1.99
30054259--30055230	4	243.0	4	98	0	1872	25	0	25	49	1.56
30056168--30056339	42	4.1	42	82	0	202	30	18	20	30	1.96
30072549--30072583	3	11.7	3	100	0	70	31	0	0	68	0.90
30074971--30075050	3	26.7	3	79	5	81	28	7	0	63	1.21
30083114--30083149	18	1.9	19	88	5	56	41	19	11	27	1.85
30083152--30083215	17	3.6	17	70	12	56	50	12	3	34	1.56
30083347--30083424	38	2.0	39	92	2	131	17	3	26	51	1.63
30083405--30083429	13	1.9	13	100	0	50	12	0	48	40	1.40
30086898--30086976	37	2.1	37	88	4	115	26	31	17	24	1.97
30087182--30087260	37	2.1	37	88	4	115	26	31	17	24	1.97
30086862--30087416	284	2.0	284	100	0	1110	29	24	18	27	1.98
30087379--30087499	47	2.6	45	87	7	170	29	26	7	36	1.84
30090088--30090137	26	1.9	26	83	0	64	48	28	6	18	1.71
30090257--30090293	18	2.1	18	94	0	65	21	8	40	29	1.82
30098452--30098576	54	2.3	54	83	2	144	26	26	19	28	1.99
30102390--30102449	30	2.0	31	90	3	95	41	0	38	20	1.52
30102554--30102614	30	2.0	31	84	9	81	40	0	39	19	1.52
30102663--30102699	9	4.1	9	92	0	65	29	10	13	45	1.77
30107527--30107555	14	2.1	14	100	0	58	62	0	0	37	0.96
30110802--30110884	36	2.3	37	79	6	98	34	27	9	27	1.88
30114777--30114806	2	15.0	2	92	0	51	46	3	50	0	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30115065--30115094	11	2.7	11	94	0	51	60	0	0	40	0.97
30117758--30117799	22	1.9	22	90	9	68	42	11	0	45	1.41
30117942--30117995	23	2.5	22	87	6	74	59	7	1	31	1.36
30117945--30118015	3	23.3	3	74	8	63	61	5	1	30	1.27
30118481--30118518	11	3.2	12	88	11	60	47	0	52	0	1.00
30130337--30130381	22	2.0	22	91	0	72	28	8	31	31	1.88
30130867--30130921	27	2.0	28	82	3	67	36	10	25	27	1.89
30131358--30131434	32	2.4	32	86	0	118	29	14	25	29	1.95
30131318--30131490	93	1.9	93	81	0	211	32	16	24	26	1.96
30131512--30131581	29	2.4	28	81	11	79	24	20	27	28	1.99
30139100--30139212	41	2.7	43	78	12	126	30	21	16	31	1.95
30145002--30145477	104	4.6	104	97	0	855	30	30	20	18	1.97
30164074--30164119	10	4.5	10	88	2	65	47	23	0	28	1.52
30166360--30166500	70	2.0	71	97	1	266	19	8	24	47	1.77
30168659--30168736	9	8.7	9	76	10	79	28	12	16	42	1.85
30168667--30168735	36	1.9	36	88	5	104	28	11	18	40	1.86
30179351--30179502	55	2.7	56	86	5	193	31	28	14	25	1.95
30179351--30179502	27	5.5	28	86	4	193	31	28	14	25	1.95
30181273--30181303	15	2.1	15	100	0	62	54	12	6	25	1.62
30194059--30194097	18	2.1	19	90	4	62	33	5	0	61	1.18
30198449--30198645	104	1.9	104	88	3	299	29	8	23	39	1.83
30199581--30199624	22	2.0	22	100	0	88	31	9	22	36	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30199900--30199931	11	2.9	11	100	0	64	28	0	6	65	1.16
30202496--30202547	13	4.0	13	80	5	52	73	1	17	7	1.16
30209784--30209961	27	6.6	27	82	3	178	30	27	15	26	1.96
30218240--30218611	190	2.0	190	89	2	568	36	16	16	30	1.91
30242682--30243582	42	20.9	42	94	5	1497	33	9	28	28	1.88
30243767--30243845	38	2.1	37	86	6	106	25	17	30	26	1.97
30247359--30247390	17	1.9	16	93	6	55	28	28	18	25	1.98
30247892--30247922	11	2.8	11	100	0	62	19	19	16	45	1.86
30255175--30255205	14	2.2	14	100	0	62	48	22	6	22	1.73
30256042--30256092	25	2.0	26	84	3	68	35	15	1	47	1.57
30258510--30258552	19	2.2	20	88	12	63	39	0	6	53	1.28
30259698--30259734	19	2.0	18	94	5	65	67	0	0	32	0.91
30271859--30271916	27	2.1	27	83	0	71	34	10	29	25	1.89
30281404--30281435	13	2.5	13	94	0	55	56	15	6	21	1.62
30283688--30283818	50	2.6	52	79	6	151	37	12	15	34	1.86
30287883--30287952	20	3.5	21	75	15	67	55	1	4	38	1.28
30287944--30288090	9	15.1	9	68	21	59	63	2	4	29	1.26
30287945--30288054	30	3.7	29	71	10	98	63	1	5	29	1.27
30287940--30288090	10	15.4	10	67	22	63	62	1	4	31	1.27
30287954--30288085	20	6.7	19	67	17	74	64	2	4	28	1.25
30292361--30292394	16	2.1	17	88	5	52	11	0	11	76	1.02
30303326--30303546	104	2.1	104	86	0	307	30	23	15	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30303513--30303587	36	2.1	36	87	0	105	29	22	14	33	1.94
30306869--30306908	21	2.0	20	85	5	53	37	2	7	52	1.43
30306950--30306995	22	2.1	21	84	11	58	32	0	2	65	1.05
30306956--30306997	20	2.0	22	86	9	61	35	0	4	59	1.19
30306956--30307013	22	2.6	21	79	17	55	36	0	5	58	1.20
30311283--30311489	43	4.8	43	78	5	177	26	26	19	27	1.99
30314166--30314210	21	2.2	20	84	4	54	24	2	48	24	1.62
30314220--30314746	143	3.7	142	87	4	697	32	10	14	42	1.80
30315080--30315580	46	11.2	46	65	15	206	29	22	20	26	1.99
30315004--30315677	134	5.0	134	96	0	1224	29	22	20	27	1.98
30321017--30321058	21	2.0	21	81	9	50	30	2	19	47	1.62
30324038--30324083	21	2.2	21	84	7	58	23	2	50	23	1.61
30325178--30325220	21	2.0	21	82	8	52	37	39	0	23	1.55
30325280--30325378	7	14.7	7	72	14	57	39	39	0	21	1.53
30326307--30326506	41	4.9	41	88	2	287	29	27	21	22	1.99
30326840--30327275	114	3.8	114	95	1	734	28	22	18	30	1.97
30327318--30328124	266	3.1	266	90	4	1294	31	18	20	28	1.96
30328334--30328685	110	3.2	110	99	0	695	26	4	24	44	1.73
30328923--30328972	15	3.4	14	77	5	55	32	2	26	40	1.67
30328923--30328979	22	2.6	21	86	5	60	33	1	26	38	1.67
30328893--30328975	29	2.9	30	78	7	91	31	2	28	37	1.70
30328930--30328978	15	3.3	15	74	8	55	32	2	26	38	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30328939--30328991	22	2.5	22	96	3	99	32	3	26	37	1.74
30329530--30329608	40	2.0	40	87	2	115	16	43	5	35	1.70
30331594--30331626	15	2.2	15	94	0	57	39	3	3	54	1.31
30331802--30331856	24	2.2	26	83	6	69	58	18	1	21	1.49
30331946--30332196	9	29.8	9	71	12	158	46	19	3	30	1.67
30331988--30332135	16	9.0	16	72	15	115	46	20	2	30	1.64
30331946--30332135	41	4.8	41	74	17	177	47	18	2	30	1.62
30331899--30332207	25	12.2	25	76	6	225	47	18	3	30	1.64
30333294--30333459	84	2.0	84	96	0	305	25	19	25	28	1.99
30338259--30338443	42	4.3	42	80	8	187	25	22	22	29	1.99
30338259--30338422	85	1.9	85	84	7	217	25	22	22	29	1.99
30338514--30338556	21	2.0	21	90	0	68	46	27	13	11	1.78
30338543--30338606	33	1.9	33	90	0	101	25	17	25	32	1.96
30343522--30343815	48	6.2	47	91	0	453	31	9	30	27	1.88
30343934--30344012	37	2.1	37	92	0	131	25	18	30	25	1.98
30344633--30344676	23	1.9	23	100	0	88	31	9	31	27	1.88
30344754--30345158	45	9.0	45	86	6	558	31	25	15	28	1.95
30344764--30345162	134	3.0	132	90	3	604	31	24	15	28	1.95
30345431--30345830	45	8.9	45	82	7	481	30	23	17	29	1.97
30345431--30345830	90	4.4	90	87	2	570	30	23	17	29	1.97
30345850--30346223	100	3.7	99	84	2	426	25	20	21	31	1.98
30345991--30346150	50	3.2	50	69	3	142	22	21	23	33	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30346018--30346200	50	3.7	48	67	8	125	25	16	22	34	1.95
30347411--30347453	17	2.5	17	81	7	52	0	13	6	79	0.93
30347895--30347940	21	2.2	21	85	11	60	0	6	13	80	0.89
30351512--30351561	21	2.3	23	86	6	68	54	2	6	38	1.37
30351621--30351674	29	1.9	29	85	7	76	55	0	9	35	1.32
30358296--30358360	28	2.3	28	97	0	121	40	21	24	13	1.90
30360725--30360755	13	2.4	13	94	0	53	61	19	12	6	1.53
30360741--30360863	27	4.5	28	77	7	119	40	23	24	11	1.87
30362402--30362543	54	2.6	54	77	2	124	16	30	23	28	1.97
30364202--30364270	35	2.0	35	94	0	120	27	14	2	55	1.54

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205