genome.fa.s19.2.7.7.80.10.50.1000.173.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  61124829

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   

This is table  173  of  205  ( 24568 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51397585--51397709	20	6.2	20	82	3	144	8	30	20	40	1.83
51397588--51397706	40	3.0	40	87	4	168	8	31	20	40	1.82
51410255--51410909	44	14.7	44	78	5	566	27	23	15	33	1.95
51410255--51410813	89	6.3	89	84	2	669	27	22	15	34	1.94
51410255--51410909	89	7.4	88	82	5	602	27	23	15	33	1.95
51418970--51419009	20	2.0	20	85	0	53	32	10	22	35	1.87
51425791--51425864	39	1.9	40	83	8	100	50	1	6	41	1.37
51430992--51432674	560	3.0	560	99	0	3316	33	17	16	32	1.93
51433957--51434036	37	2.1	38	88	2	126	52	6	22	18	1.68
51435341--51435389	25	2.0	25	88	8	73	46	26	10	16	1.78
51449402--51449439	20	1.9	20	88	0	58	28	28	26	15	1.96
51454185--51454255	26	2.5	28	80	15	83	54	5	2	36	1.38
51454846--51455044	87	2.3	87	87	4	283	37	22	9	30	1.86
51455072--51455120	19	2.6	19	78	12	57	63	0	2	34	1.06
51455119--51455154	17	2.1	17	94	0	63	52	5	0	41	1.24
51455149--51455205	29	1.9	30	85	3	80	59	3	0	36	1.14
51455347--51455435	47	1.9	46	86	6	126	29	6	3	60	1.38
51455402--51455445	19	2.3	19	84	11	54	20	6	2	70	1.21
51456487--51456535	22	2.2	22	85	3	62	14	6	2	77	1.05
51457131--51457172	19	2.2	19	83	8	50	23	2	7	66	1.28
51459754--51459780	2	13.5	2	100	0	54	51	0	0	48	1.00
51473515--51473550	17	2.1	18	89	5	56	50	5	0	44	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51477103--51477140	11	3.5	11	100	0	76	28	7	15	47	1.74
51476665--51477558	451	2.0	451	93	0	1529	30	10	15	43	1.80
51485581--51485645	32	2.0	32	100	0	130	46	9	21	23	1.80
51486076--51486444	29	12.8	30	86	10	511	27	0	24	47	1.52
51486163--51486217	22	2.5	20	96	3	65	25	0	25	49	1.51
51486076--51486444	140	2.6	144	92	3	622	27	0	24	47	1.52
51486327--51486444	36	3.6	36	81	17	136	26	0	25	48	1.52
51499768--51500037	28	9.7	28	77	10	232	25	22	13	38	1.90
51499791--51500037	56	4.4	56	80	9	272	25	21	12	40	1.89
51499773--51500037	84	3.2	83	81	8	290	25	21	12	39	1.89
51503279--51503316	18	2.1	19	90	5	60	21	10	28	39	1.86
51508174--51508214	15	2.7	15	85	10	57	41	4	0	53	1.22
51508174--51508218	16	2.9	16	87	9	58	42	6	0	51	1.28
51508470--51508633	44	3.8	43	75	9	138	29	28	16	25	1.97
51508653--51508689	18	2.0	19	89	5	58	37	0	0	62	0.96
51509664--51509694	16	1.9	16	100	0	62	38	12	12	35	1.82
51510678--51510717	21	2.0	21	90	5	64	37	0	5	57	1.21
51512768--51512846	41	1.9	41	89	0	122	27	26	20	25	1.99
51516766--51516848	41	2.0	41	95	0	148	32	20	22	24	1.98
51519717--51520568	426	2.0	426	100	0	1704	28	10	22	37	1.88
51539157--51539204	23	2.1	23	84	0	60	39	20	10	29	1.86
51541824--51541854	15	2.1	15	93	0	53	19	29	12	38	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51565409--51565450	19	2.3	18	92	8	75	26	0	4	69	1.08
51568061--51568121	24	2.7	23	80	14	65	32	0	42	24	1.55
51568686--51569006	27	11.9	27	86	2	394	39	21	19	19	1.93
51576812--51576935	66	1.9	66	89	3	196	22	20	20	36	1.95
51577019--51577079	11	5.5	11	78	0	68	21	34	1	42	1.63
51577197--51577242	11	4.2	11	88	0	56	21	32	0	45	1.52
51577033--51577350	164	1.9	164	90	3	507	25	16	6	51	1.68
51584799--51584982	40	4.6	40	83	6	205	23	21	27	27	1.99
51584799--51584979	80	2.3	81	84	9	230	23	21	27	27	1.99
51586909--51586947	18	2.0	20	90	9	64	46	5	0	48	1.24
51589451--51590531	540	2.0	541	96	0	1975	28	17	24	29	1.97
51590324--51591619	649	2.0	649	99	0	2538	29	15	22	33	1.94
51593904--51593936	12	3.0	11	87	12	50	45	18	0	36	1.49
51596741--51596781	21	2.0	21	90	0	64	19	29	21	29	1.98
51601887--51601944	29	2.0	30	82	3	73	44	1	5	48	1.35
51604884--51604917	3	11.7	3	93	6	61	67	0	0	32	0.91
51609411--51609451	18	2.3	19	80	16	52	29	2	2	65	1.18
51610978--51611029	8	6.2	8	82	12	61	34	0	3	61	1.14
51612905--51612989	39	2.2	39	93	0	143	15	17	34	32	1.91
51614996--51615087	25	3.7	24	77	8	78	17	26	20	35	1.95
51615079--51615165	25	3.5	24	74	14	70	21	27	19	31	1.98
51615077--51615182	25	4.2	25	72	10	65	22	26	19	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51615275--51615316	21	2.0	22	81	13	52	35	4	19	40	1.72
51615985--51616097	42	2.7	42	87	1	154	23	25	32	18	1.97
51631213--51631250	18	2.1	18	95	0	67	23	26	10	39	1.87
51631502--51631546	21	2.1	21	95	0	81	35	46	15	2	1.58
51634788--51635071	126	2.3	126	86	1	426	29	16	17	36	1.92
51634978--51635150	91	1.9	91	87	2	258	31	18	10	38	1.86
51635212--51635338	34	3.8	33	79	9	150	41	15	0	42	1.47
51636670--51636890	111	2.0	110	98	0	424	33	13	7	45	1.72
51637487--51637555	21	3.3	21	70	8	68	43	0	18	37	1.51
51637475--51637556	42	2.0	42	95	0	146	41	0	20	37	1.53
51642748--51642819	21	3.4	21	69	14	58	44	0	18	37	1.50
51642738--51642817	42	1.9	42	92	0	133	43	0	20	36	1.52
51651411--51651448	16	2.4	16	90	0	58	44	2	0	52	1.14
51651777--51651822	20	2.3	20	80	0	56	36	8	4	50	1.53
51653979--51654091	55	2.1	55	80	6	124	53	4	7	34	1.48
51654235--51654290	3	19.0	3	78	10	53	60	3	3	32	1.31
51654210--51654284	18	3.9	18	73	14	53	58	2	8	30	1.41
51654212--51654294	15	5.5	15	72	19	57	60	2	6	31	1.34
51655893--51656661	87	8.8	86	73	4	468	23	23	23	30	1.99
51655894--51656689	131	6.1	132	95	0	1316	23	24	22	30	1.99
51655893--51656689	44	18.2	44	72	5	558	23	24	22	30	1.99
51656673--51657422	44	16.8	44	70	12	275	26	23	20	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51656719--51657305	134	4.4	134	92	1	885	26	23	19	30	1.98
51658655--51658706	7	7.7	7	80	8	63	13	15	0	71	1.15
51658654--51658706	20	2.7	20	87	0	79	13	15	0	71	1.14
51663191--51663234	22	2.0	22	95	0	79	25	9	34	31	1.87
51664395--51664450	3	19.0	3	78	10	53	60	3	3	32	1.31
51664370--51664444	18	3.9	18	73	14	53	58	2	8	30	1.41
51664372--51664454	15	5.5	15	72	19	57	60	2	6	31	1.34
51668199--51668419	90	2.5	88	84	5	284	38	21	8	32	1.83
51668428--51668452	12	2.1	12	100	0	50	76	0	8	16	1.02
51668449--51668493	19	2.4	19	92	7	74	60	0	2	37	1.09
51668782--51668848	10	6.9	10	72	13	50	38	1	0	59	1.06
51668782--51668848	19	3.5	19	76	8	64	38	1	0	59	1.06
51668857--51668902	10	4.6	10	79	17	51	17	4	0	78	0.91
51668857--51668912	10	5.4	11	80	20	50	17	5	0	76	0.96
51668858--51668900	19	2.3	19	92	8	70	18	4	0	76	0.95
51668885--51668912	12	2.3	12	100	0	56	14	7	0	78	0.95
51671193--51671231	18	2.1	18	85	9	51	46	7	0	46	1.31
51671201--51671240	19	2.1	19	86	9	55	45	7	0	47	1.31
51671550--51671587	19	2.0	19	85	10	51	47	10	2	39	1.52
51674566--51674631	23	3.0	23	72	17	59	48	3	7	40	1.47
51674608--51674639	12	2.4	14	85	15	50	43	0	9	46	1.35
51683881--51683949	29	2.4	29	78	9	79	37	10	18	33	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51684633--51684771	32	4.4	32	84	0	172	37	20	21	20	1.95
51684946--51685018	24	3.0	24	75	0	65	41	23	12	23	1.88
51685061--51685236	27	6.5	27	74	1	138	24	18	21	36	1.95
51685044--51685236	81	2.4	81	80	4	194	24	18	20	36	1.95
51685061--51685236	54	3.3	54	77	1	165	24	18	21	36	1.95
51686816--51687156	51	6.7	51	78	7	306	28	15	26	29	1.96
51686816--51687159	102	3.4	102	83	6	405	28	15	26	29	1.96
51694397--51694624	35	6.5	35	75	12	175	24	18	15	42	1.88
51694405--51694600	102	1.9	100	84	5	259	24	17	16	41	1.90
51694443--51694567	67	1.9	66	89	1	196	24	16	17	42	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205