genome.fa.s19.2.7.7.80.10.50.1000.134.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  61124829

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   

This is table  134  of  205  ( 24568 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40495673--40495729	26	2.2	26	100	0	114	26	7	7	59	1.49
40495701--40495831	55	2.3	56	79	10	142	34	9	9	46	1.69
40498898--40499985	125	8.7	125	99	0	2124	33	21	14	30	1.93
40508404--40508443	11	3.6	11	93	6	64	22	35	0	42	1.54
40508484--40508526	12	3.7	12	84	3	61	46	2	0	51	1.13
40510526--40511429	23	39.7	23	77	15	803	49	24	0	25	1.55
40510525--40511544	68	15.1	66	78	15	733	49	24	0	25	1.54
40511120--40511203	30	3.1	29	72	25	92	50	28	1	20	1.56
40511421--40511452	7	4.6	7	100	0	64	46	40	0	12	1.42
40510519--40511511	91	11.0	91	83	10	988	49	25	0	24	1.55
40511435--40511513	23	3.5	23	85	1	88	45	32	0	21	1.52
40511330--40511536	105	2.0	105	89	0	315	48	25	0	25	1.55
40511448--40511544	23	4.1	23	83	2	113	48	24	0	26	1.51
40511539--40511782	116	2.1	116	93	1	409	39	9	6	44	1.64
40514794--40515141	124	2.8	123	88	1	507	32	22	16	29	1.96
40518243--40518290	24	2.0	24	91	0	78	33	6	8	52	1.57
40523377--40523403	9	3.0	9	100	0	54	44	0	0	55	0.99
40524736--40524780	20	2.2	21	77	18	51	2	24	2	71	1.09
40534786--40534826	16	2.6	15	84	7	55	48	0	2	48	1.14
40542866--40542898	6	5.5	6	89	10	50	78	3	0	18	0.87
40546810--40547707	454	2.0	453	94	1	1566	37	19	17	26	1.93
40547763--40547945	79	2.3	81	82	9	216	24	27	22	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40547742--40547945	40	5.1	40	80	8	220	24	27	22	25	2.00
40550362--40550433	33	2.2	33	84	0	90	25	25	22	27	2.00
40550379--40550451	33	2.2	33	87	0	101	23	24	21	30	1.99
40574955--40575282	174	1.9	174	94	0	584	30	24	14	30	1.95
40575235--40575313	29	2.7	30	82	13	110	30	30	13	25	1.94
40584893--40584966	15	4.9	16	70	12	57	33	13	12	40	1.82
40591737--40592078	51	6.8	52	78	7	303	29	26	16	28	1.96
40591737--40592078	102	3.4	102	82	7	396	29	26	16	28	1.96
40591735--40592077	153	2.3	149	79	9	383	29	25	15	29	1.96
40592859--40592918	11	5.6	10	79	14	66	58	1	0	40	1.08
40592859--40592918	22	2.7	22	94	0	102	58	1	0	40	1.08
40594837--40594988	27	5.6	27	92	3	232	30	28	13	26	1.94
40594837--40595013	55	3.2	55	90	0	255	31	29	12	25	1.93
40598787--40598812	12	2.2	12	100	0	52	38	0	0	61	0.96
40600472--40600582	51	2.2	51	93	0	186	33	14	22	29	1.94
40601847--40601901	25	2.2	26	83	9	78	63	1	5	29	1.27
40602566--40602599	16	2.2	15	89	5	50	55	0	0	44	0.99
40606390--40606499	50	2.2	52	80	3	134	35	13	14	36	1.86
40619562--40619746	79	2.3	81	82	9	229	25	27	22	24	2.00
40619562--40619746	40	4.7	40	79	12	211	25	27	22	24	2.00
40622915--40623001	33	2.6	33	85	0	111	42	13	25	18	1.87
40623882--40623945	31	2.1	31	96	0	119	53	0	39	7	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40624578--40624678	50	2.0	50	98	0	193	34	17	4	42	1.71
40625315--40625349	16	2.1	17	89	5	54	11	51	0	37	1.38
40627133--40627211	39	2.0	39	97	0	149	30	16	25	27	1.97
40627339--40628720	683	2.0	683	99	0	2703	34	14	22	29	1.93
40632889--40632923	16	2.1	17	89	5	54	37	0	51	11	1.38
40634841--40634927	45	1.9	45	92	0	147	32	21	17	28	1.96
40634938--40635120	51	3.6	49	75	6	170	31	26	16	25	1.97
40634936--40635123	101	1.9	101	87	3	279	31	26	16	25	1.96
40642771--40643765	50	19.9	50	97	0	1765	19	33	21	25	1.97
40646837--40646872	16	2.2	17	90	5	56	11	52	0	36	1.37
40649131--40649430	131	2.3	131	97	0	555	43	6	27	23	1.78
40665158--40665254	50	1.9	50	97	0	185	21	23	15	39	1.92
40667098--40667244	74	2.0	74	98	0	285	24	27	18	29	1.98
40668913--40669064	27	5.6	27	92	3	232	30	28	13	27	1.94
40668913--40669089	55	3.2	55	89	0	246	31	29	12	26	1.93
40683801--40684151	47	7.4	47	95	1	603	29	29	7	32	1.86
40694273--40694379	50	2.1	50	81	3	126	22	28	21	28	1.99
40701663--40701701	20	2.0	20	90	10	62	15	23	5	56	1.59
40701907--40702032	49	2.6	49	75	6	121	26	25	19	29	1.98
40708881--40708911	12	2.6	12	100	0	62	61	6	0	32	1.21
40712623--40712653	16	1.9	16	93	0	53	25	16	25	32	1.96
40714135--40714185	24	2.1	24	82	7	59	17	41	5	35	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40723393--40723448	3	18.7	3	96	0	103	0	32	0	67	0.91
40724342--40724395	25	2.1	26	86	10	76	62	1	3	31	1.23
40724505--40724546	21	2.0	20	86	13	59	19	9	50	21	1.75
40735921--40736003	43	2.0	39	81	9	94	48	3	22	25	1.67
40739423--40739600	90	1.9	92	85	3	243	30	23	11	34	1.90
40745491--40745534	21	2.1	21	84	16	56	22	6	15	54	1.65
40747020--40747080	27	2.3	27	82	0	68	34	19	14	31	1.92
40751042--40751079	20	1.9	20	84	10	51	23	10	18	47	1.79
40757195--40757225	9	3.6	9	95	4	55	48	0	51	0	1.00
40759740--40759874	28	4.8	28	80	1	137	17	23	15	42	1.88
40759740--40759888	56	2.7	56	82	6	167	18	22	14	43	1.87
40762811--40762947	49	2.8	50	77	1	150	33	25	16	24	1.95
40763079--40763134	26	2.2	26	100	0	112	42	16	7	33	1.75
40764308--40764378	32	2.2	32	97	2	133	28	4	45	22	1.71
40768428--40768686	120	2.2	120	83	6	312	25	21	27	25	1.99
40768428--40768653	40	5.7	40	90	4	314	24	21	27	26	1.99
40776448--40776632	79	2.3	81	84	7	236	24	22	27	25	2.00
40776449--40776632	40	4.6	40	83	9	216	24	22	27	25	2.00
40776449--40776665	79	2.7	79	81	7	201	25	22	27	24	2.00
40779234--40779275	21	2.0	22	85	4	59	38	7	2	52	1.42
40780029--40780079	18	2.8	18	76	5	59	54	3	33	7	1.47
40791230--40791273	23	2.0	22	86	8	63	50	2	2	45	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40791293--40791338	22	2.1	22	100	0	92	43	8	15	32	1.77
40791934--40791991	23	2.6	21	76	17	55	46	3	5	44	1.42
40793368--40793456	25	3.6	25	73	14	85	25	23	21	29	1.99
40809313--40809490	27	6.6	27	83	3	205	26	15	28	29	1.96
40809314--40809469	82	1.9	81	88	3	233	26	15	28	29	1.96
40809310--40809490	82	2.2	81	83	2	229	27	15	27	29	1.96
40812554--40812598	20	2.3	20	85	11	58	15	6	20	57	1.60
40813514--40813584	19	3.7	19	67	14	65	18	19	28	33	1.95
40813520--40813600	38	2.1	37	82	8	101	22	18	23	35	1.95
40817801--40817965	49	3.3	49	64	22	124	21	9	26	43	1.82
40824239--40824280	21	2.0	21	86	9	59	40	11	4	42	1.63
40839227--40839296	25	2.8	25	76	2	70	22	22	22	31	1.98
40840324--40840545	48	4.6	48	80	1	239	24	28	18	28	1.98
40840359--40840543	96	1.9	96	89	0	289	25	28	17	28	1.98
40846249--40846297	26	1.9	26	87	4	73	63	12	10	14	1.53
40848338--40848667	142	2.3	146	82	9	392	46	4	8	40	1.55
40848338--40848668	75	4.5	75	78	8	337	46	4	8	40	1.56
40864696--40864841	43	3.4	43	70	12	122	24	18	27	29	1.98
40879648--40879688	16	2.4	18	88	8	59	17	4	0	78	0.93
40883790--40883835	23	2.0	23	95	0	83	19	23	26	30	1.98
40901024--40901066	17	2.6	17	92	3	70	46	25	0	27	1.53
40901027--40901142	39	3.0	37	79	9	115	46	19	3	30	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40901039--40901162	39	3.2	39	81	3	133	45	19	4	29	1.71
40904524--40904631	43	2.5	43	87	3	164	20	28	24	26	1.99
40905654--40905776	43	2.7	48	72	19	125	30	23	18	27	1.98
40912449--40912507	30	1.9	31	86	3	84	47	5	22	25	1.71
40914010--40914121	51	2.2	51	90	0	170	41	12	20	25	1.88
40918188--40918336	39	3.8	39	93	0	253	23	30	23	22	1.99
40925299--40925396	39	2.5	39	93	0	160	24	21	28	25	1.99
40928498--40928564	34	2.0	34	100	0	134	43	23	11	20	1.85
40940801--40940875	37	2.0	37	97	0	141	54	16	5	24	1.62
40942616--40942722	56	1.9	56	82	0	133	32	12	18	36	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205