genome.fa.s19.2.7.7.80.10.50.1000.169.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  61124829

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   

This is table  169  of  205  ( 24568 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50349632--50349697	32	2.1	32	100	0	132	31	21	15	31	1.94
50354672--50354726	29	1.9	28	85	3	74	40	3	3	52	1.36
50356772--50356797	3	8.7	3	100	0	52	65	0	0	34	0.93
50358523--50358658	44	3.1	44	80	6	150	29	22	15	33	1.94
50365998--50366045	12	3.8	12	73	10	51	68	12	2	16	1.29
50366001--50366064	26	2.5	26	97	2	121	64	14	3	18	1.42
50367252--50367297	11	4.2	11	81	13	51	80	13	0	6	0.89
50367261--50367297	18	2.1	18	90	5	58	81	13	0	5	0.86
50367254--50367303	22	2.2	22	82	10	57	78	12	2	8	1.05
50369399--50369583	99	1.9	99	84	4	248	37	22	9	30	1.86
50391754--50391791	17	2.2	17	95	0	67	26	15	15	42	1.87
50392209--50392305	33	3.1	32	73	22	89	29	21	21	26	1.99
50392418--50392519	26	3.9	26	83	2	107	36	24	22	16	1.94
50392659--50392733	26	2.8	26	80	9	89	21	16	20	42	1.89
50392697--50392840	27	5.3	27	84	5	175	19	22	20	38	1.94
50392697--50392840	54	2.7	54	84	6	193	19	22	20	38	1.94
50392670--50392840	81	2.1	80	83	9	206	19	21	20	39	1.93
50398790--50398865	26	2.9	26	82	3	91	42	23	18	15	1.89
50399037--50399162	27	4.7	26	76	8	87	20	19	21	38	1.93
50399037--50399162	54	2.4	54	76	9	141	20	19	21	38	1.93
50404778--50404817	21	1.9	21	89	0	62	20	0	2	77	0.88
50409907--50410130	27	8.4	27	79	10	156	32	16	14	36	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50409904--50410136	53	4.4	53	86	3	301	32	15	15	36	1.89
50409904--50410130	80	2.8	80	74	10	230	32	15	14	37	1.88
50425952--50425978	14	1.9	14	100	0	54	55	0	0	44	0.99
50427609--50427634	13	2.0	13	100	0	52	53	0	0	46	1.00
50429295--50429376	37	2.2	37	93	0	146	30	23	23	23	1.99
50430498--50430791	94	3.1	94	81	4	256	27	21	17	33	1.96
50430592--50431345	44	16.3	44	66	19	231	28	21	17	32	1.96
50430558--50430850	94	3.1	93	81	5	295	29	19	18	32	1.96
50430699--50430952	138	1.8	138	82	1	312	28	18	19	33	1.96
50430824--50431048	94	2.4	94	81	3	265	28	22	16	31	1.96
50430918--50431345	138	3.1	138	79	3	468	28	22	16	32	1.95
50430580--50431220	232	2.8	231	80	6	708	28	20	17	33	1.95
50431195--50431409	94	2.3	94	86	1	297	29	22	17	30	1.97
50431238--50431398	50	3.4	48	72	18	138	31	24	17	26	1.97
50433845--50433871	13	2.1	13	100	0	54	22	33	7	37	1.82
50441880--50441923	3	14.7	3	90	0	70	68	0	29	2	1.02
50443653--50443707	25	2.2	25	90	0	83	63	16	3	16	1.44
50459969--50460003	17	2.1	17	100	0	70	31	11	22	34	1.90
50462811--50462843	12	2.8	12	86	4	50	30	3	0	66	1.06
50464944--50464990	19	2.5	19	86	6	60	25	19	10	44	1.82
50468068--50468116	19	2.7	18	87	9	73	83	4	12	0	0.77
50468999--50469056	24	2.4	24	91	0	89	34	12	20	32	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50469730--50469883	49	3.1	49	65	9	141	31	20	21	26	1.98
50469566--50470232	99	6.7	100	85	2	797	30	20	22	26	1.98
50469566--50470233	298	2.2	299	87	1	975	30	20	22	26	1.98
50469580--50470232	199	3.3	198	86	1	878	30	20	22	26	1.98
50469776--50470239	50	9.3	50	64	9	187	29	20	23	27	1.99
50470240--50470920	44	15.8	43	71	8	442	30	22	20	26	1.98
50470239--50470951	129	5.5	129	94	1	1151	30	21	20	26	1.98
50472604--50472633	12	2.6	11	90	10	51	30	3	0	66	1.07
50474251--50474308	28	2.1	28	100	0	116	39	24	10	25	1.87
50474976--50475043	30	2.3	29	97	2	127	58	8	11	20	1.59
50475646--50475702	29	1.9	30	82	3	71	38	1	12	47	1.51
50477939--50477971	15	2.2	15	89	10	50	42	45	6	6	1.53
50478336--50478368	17	1.9	17	93	0	57	6	3	15	75	1.11
50479270--50479320	3	17.0	3	95	0	93	33	1	0	64	1.05
50479561--50479592	15	2.1	15	94	0	55	18	3	3	75	1.08
50493669--50493715	6	8.0	6	90	2	60	14	2	4	78	0.99
50494897--50494984	43	2.0	43	100	0	176	38	19	15	26	1.92
50501056--50501447	206	1.9	206	85	1	543	26	29	21	22	1.99
50508029--50508073	22	2.2	20	84	8	54	68	4	2	24	1.19
50508511--50508561	25	2.0	25	84	0	66	54	3	7	33	1.47
50516944--50516969	13	2.0	13	100	0	52	38	7	38	15	1.76
50519981--50520022	15	2.7	16	82	14	52	45	0	2	52	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50519972--50520013	15	2.9	15	82	10	52	47	0	0	52	1.00
50520150--50520250	44	2.4	42	76	11	100	31	29	4	33	1.79
50520148--50520257	45	2.6	43	76	11	111	32	29	5	32	1.80
50520238--50520289	16	3.2	16	94	0	86	36	34	0	28	1.58
50522258--50522488	43	5.4	42	81	4	185	29	29	20	20	1.98
50522260--50522488	86	2.7	85	82	2	253	29	29	20	20	1.98
50526483--50526567	7	11.4	7	69	16	55	40	42	0	17	1.50
50526486--50526546	16	3.9	16	91	6	90	34	47	0	18	1.49
50526486--50526548	8	8.1	8	76	13	69	33	49	0	17	1.47
50526781--50527232	113	4.0	114	86	5	616	26	25	21	26	2.00
50526781--50527232	223	2.0	223	85	5	617	26	25	21	26	2.00
50527133--50527276	72	2.0	72	93	0	243	25	22	24	27	2.00
50527024--50527423	186	2.2	182	89	2	613	26	26	21	25	2.00
50527205--50527464	114	2.3	114	92	1	423	26	28	21	24	1.99
50527392--50527505	41	2.8	41	100	0	228	26	30	19	23	1.98
50527433--50527686	114	2.2	113	87	0	382	25	25	20	27	1.99
50527291--50527617	155	2.1	155	93	0	555	27	27	19	25	1.99
50531499--50531550	8	6.0	9	82	13	65	53	1	42	1	1.23
50532903--50533131	104	2.2	104	91	3	363	23	20	31	24	1.98
50533063--50533169	42	2.6	42	89	1	162	22	23	36	17	1.95
50534809--50534850	20	2.0	22	86	9	61	45	0	0	54	0.99
50534862--50534898	16	2.3	17	81	13	51	59	2	0	37	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50535443--50535481	14	2.8	14	84	0	51	35	17	5	41	1.72
50544492--50544558	30	2.2	30	83	0	80	35	19	11	32	1.88
50544551--50544692	29	4.9	28	74	13	108	22	23	15	38	1.93
50544546--50544727	87	2.1	87	87	2	267	24	23	14	37	1.93
50544593--50544808	29	7.4	29	76	5	141	27	22	12	37	1.91
50554611--50554657	21	2.2	21	81	7	51	53	2	0	44	1.12
50559559--50559631	36	2.0	36	94	0	128	41	24	16	17	1.90
50560241--50560303	31	2.0	31	100	0	126	38	15	12	33	1.86
50560794--50560822	14	2.0	15	93	6	51	13	27	3	55	1.55
50567208--50567263	27	2.0	28	82	3	69	41	1	3	53	1.29
50567903--50567970	26	2.5	27	83	11	86	26	0	17	55	1.42
50567992--50568363	102	3.5	104	81	9	355	26	0	14	58	1.42
50568336--50568374	20	2.0	20	100	0	78	28	0	10	61	1.28
50568157--50568378	112	2.0	112	85	5	305	25	0	13	60	1.39
50571453--50571504	27	1.9	27	88	0	77	19	25	30	25	1.98
50572818--50572875	31	1.9	31	86	13	86	44	3	1	50	1.29
50574359--50574393	18	1.9	18	88	0	52	42	5	5	45	1.51
50576191--50576241	20	2.5	20	72	15	50	31	5	3	58	1.40
50585761--50585821	3	20.7	3	78	9	63	68	0	4	26	1.09
50585871--50585906	13	2.8	13	91	0	54	72	0	2	25	0.98
50592300--50592775	69	6.9	69	88	2	692	42	21	10	25	1.84
50592300--50592775	206	2.3	206	87	3	710	42	21	10	25	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50593331--50593367	19	2.0	19	94	5	67	35	21	5	37	1.77
50599470--50599564	45	2.1	44	81	11	104	46	7	17	28	1.75
50602547--50602595	24	2.0	24	100	0	98	51	12	12	24	1.73
50604241--50604371	68	1.9	68	85	0	181	34	25	16	23	1.95
50610919--50611119	94	2.1	94	85	3	278	26	21	29	22	1.99
50611658--50611704	19	2.4	19	86	13	69	0	44	2	53	1.12
50612044--50612113	9	7.6	9	71	16	54	18	5	1	74	1.09
50612045--50612094	19	2.8	18	85	8	66	20	6	2	72	1.16
50612047--50612111	18	3.6	18	83	6	69	20	6	1	72	1.14
50614008--50614275	134	2.0	134	100	0	536	38	7	7	47	1.60

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205