genome.fa.s19.2.7.7.80.10.50.1000.11.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  61124829

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   

This is table  11  of  205  ( 24568 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3195322--3195498	37	4.8	37	95	0	300	26	20	13	38	1.90
3202945--3203068	46	2.8	46	91	3	200	27	22	16	33	1.96
3202945--3203216	37	6.8	45	87	9	216	26	21	15	36	1.93
3203031--3203243	37	5.8	37	94	0	363	25	21	14	38	1.91
3205864--3205902	18	2.1	19	90	4	62	41	0	10	48	1.37
3206140--3206274	39	3.4	39	75	6	121	22	20	28	28	1.98
3206397--3206437	19	2.2	19	87	12	59	46	0	24	29	1.53
3211577--3212500	467	2.0	467	99	0	1839	37	17	24	20	1.94
3218704--3218866	81	2.0	82	86	3	231	31	20	23	24	1.98
3218885--3219000	45	2.6	45	82	4	146	31	21	22	24	1.98
3218985--3219014	14	2.1	14	93	0	51	26	13	40	20	1.89
3220795--3220833	19	2.0	20	85	5	53	38	2	7	51	1.44
3220854--3220883	15	2.1	14	93	6	51	33	6	0	60	1.23
3221405--3221652	128	1.9	129	90	0	390	27	17	18	36	1.93
3222193--3222249	21	2.9	19	75	12	62	47	0	3	49	1.18
3223929--3224283	46	7.7	46	84	2	410	41	12	23	22	1.88
3226593--3226631	17	2.3	17	86	8	53	30	0	20	48	1.50
3237295--3237434	46	3.0	47	82	4	169	22	24	12	40	1.89
3239287--3239334	11	4.2	11	79	10	60	64	0	0	35	0.94
3239281--3239336	24	2.3	24	87	3	76	60	1	0	37	1.07
3246766--3246808	18	2.3	19	88	8	70	27	13	13	44	1.83
3250670--3250732	21	3.1	21	67	17	60	36	7	11	44	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3255052--3255077	3	8.7	3	100	0	52	34	0	34	30	1.58
3259381--3259413	6	5.5	6	100	0	66	18	33	30	18	1.94
3262798--3262836	21	1.9	20	84	5	51	46	2	5	46	1.38
3276473--3276777	153	2.0	153	98	0	583	38	21	13	25	1.91
3278494--3278532	15	2.5	16	83	4	53	35	20	10	33	1.86
3278475--3278520	15	3.1	15	78	12	51	34	30	8	26	1.86
3279977--3280039	30	2.1	30	94	5	110	26	3	9	60	1.43
3283879--3283946	29	2.3	30	87	7	95	44	0	0	55	0.99
3290931--3291134	102	2.0	102	98	0	390	40	20	11	27	1.87
3294541--3294587	22	2.1	22	92	0	76	27	17	21	34	1.95
3296729--3296775	22	2.1	22	92	0	76	27	17	21	34	1.95
3303178--3303288	44	2.5	44	91	0	168	37	20	14	27	1.91
3314440--3314494	24	2.4	22	76	8	65	61	0	1	36	1.06
3315437--3315461	8	3.1	8	100	0	50	0	12	40	48	1.40
3320916--3321026	47	2.4	47	81	6	136	36	22	15	26	1.94
3326510--3326547	15	2.5	15	86	4	58	78	0	21	0	0.74
3326512--3326551	19	2.2	18	86	13	55	75	0	25	0	0.81
3327933--3327975	21	2.0	21	100	0	86	32	23	4	39	1.75
3335787--3335813	13	2.1	13	100	0	54	14	33	14	37	1.88
3349407--3349466	26	2.3	25	83	11	68	55	1	0	43	1.10
3353437--3353463	13	2.1	13	100	0	54	55	14	7	22	1.64
3357824--3357880	30	1.9	30	82	13	73	45	3	0	50	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3358601--3358690	45	2.0	45	100	0	180	37	13	24	24	1.91
3364130--3364263	26	5.2	26	94	0	232	30	7	26	35	1.84
3365885--3365989	27	3.9	27	86	9	135	19	24	21	34	1.96
3370328--3370366	14	2.8	14	84	0	51	46	17	0	35	1.49
3373294--3373333	2	20.0	2	100	0	80	0	50	0	50	1.00
3382116--3382169	22	2.4	23	79	11	60	50	0	1	48	1.11
3412413--3412547	39	3.4	39	74	11	116	28	27	20	23	1.99
3414111--3414151	5	8.0	5	94	5	73	60	0	0	39	0.96
3414819--3414859	11	3.7	11	80	0	55	19	14	9	56	1.66
3414896--3414958	30	2.1	30	91	5	101	28	4	7	58	1.47
3423189--3423250	27	2.3	26	76	13	63	38	1	11	48	1.49
3426763--3427861	549	2.0	549	100	0	2198	33	18	24	24	1.97
3428484--3428523	20	2.0	20	100	0	80	50	0	5	45	1.23
3428733--3428777	19	2.4	18	86	13	65	66	0	33	0	0.92
3439701--3439760	28	2.1	29	81	9	70	70	0	3	26	1.03
3444142--3444239	12	8.2	12	71	8	56	9	8	50	32	1.64
3444124--3444194	36	2.0	36	94	0	124	5	12	49	32	1.64
3444114--3444287	24	7.2	24	77	6	93	7	8	50	33	1.61
3444126--3444254	60	2.2	60	88	0	186	8	10	48	33	1.67
3444186--3444263	36	2.2	36	83	0	93	8	6	50	34	1.60
3444222--3444320	48	2.1	48	88	0	144	10	11	47	31	1.72
3444126--3444287	60	2.7	60	83	3	166	8	9	50	32	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3444222--3444320	24	4.1	24	84	0	117	10	11	47	31	1.72
3444349--3444402	12	4.4	12	81	11	56	12	0	64	22	1.27
3447260--3447339	42	1.9	42	97	0	151	31	30	8	30	1.87
3451311--3451344	9	3.8	9	96	0	59	76	0	23	0	0.79
3451734--3451804	30	2.3	31	87	2	99	56	4	2	36	1.34
3452252--3452287	18	2.0	18	100	0	72	38	11	16	33	1.84
3453425--3453554	65	2.0	64	93	1	224	35	6	9	49	1.60
3463953--3464031	28	2.8	28	86	0	104	34	11	25	29	1.91
3482851--3482889	19	2.1	19	95	0	69	51	10	5	33	1.58
3483201--3483239	19	2.1	19	95	0	69	51	10	5	33	1.58
3482638--3483337	350	2.0	349	99	0	1382	51	5	12	30	1.62
3483665--3483714	15	3.4	15	86	2	75	36	0	12	52	1.39
3484079--3484136	23	2.5	23	100	0	116	6	3	43	46	1.47
3484241--3484281	19	2.2	19	87	12	59	46	0	24	29	1.53
3486344--3486373	10	3.1	10	95	4	53	0	6	0	93	0.35
3486340--3486371	14	2.2	15	94	5	57	0	9	0	90	0.45
3491793--3491839	4	11.8	4	84	8	60	2	27	0	70	0.99
3502138--3502471	167	2.0	167	98	0	650	26	20	16	36	1.94
3521076--3521427	176	2.0	175	85	6	478	16	33	18	30	1.93
3532403--3532447	23	1.9	24	81	4	56	20	8	8	62	1.51
3542084--3542110	9	3.0	9	100	0	54	44	11	0	44	1.39
3578902--3578942	21	2.0	21	90	0	64	19	29	21	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3581790--3581814	5	5.0	5	100	0	50	80	0	20	0	0.72
3582461--3582512	26	2.0	27	88	11	81	57	0	1	40	1.10
3591929--3591992	30	2.1	30	82	8	76	43	1	3	51	1.26
3601265--3601305	21	2.0	20	90	4	64	21	19	12	46	1.82
3603034--3603098	30	2.2	29	81	8	76	30	27	6	35	1.81
3603041--3603098	30	1.9	30	85	0	80	31	24	6	37	1.82
3618910--3618948	16	2.4	16	100	0	78	71	5	10	12	1.28
3621892--3621929	20	1.9	20	84	10	51	42	13	23	21	1.88
3623581--3623620	20	2.0	20	100	0	80	50	0	5	45	1.23
3623834--3623874	19	2.2	19	91	8	66	68	0	31	0	0.90
3625026--3625294	46	5.8	46	93	0	378	40	14	23	21	1.90
3627941--3628004	33	2.0	32	84	3	83	14	10	9	65	1.47
3628836--3628962	41	3.1	40	82	2	128	36	22	21	19	1.95
3629027--3629101	22	3.4	22	67	0	60	14	22	12	50	1.76
3629022--3629125	44	2.3	46	90	3	167	11	29	9	49	1.71
3630792--3630816	12	2.1	12	100	0	50	16	24	36	24	1.94
3633014--3633061	6	8.2	6	84	15	57	16	0	2	81	0.79
3633102--3633150	23	2.1	23	88	7	73	36	2	0	61	1.08
3633118--3633161	23	1.9	23	86	9	63	36	0	0	63	0.95
3636899--3636962	21	3.0	21	86	0	83	35	26	23	14	1.93
3639153--3639200	23	2.1	23	100	0	96	37	8	25	29	1.85
3642095--3642130	17	2.1	17	100	0	72	36	27	30	5	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3644210--3644244	17	2.1	17	88	0	52	60	0	0	40	0.97
3647875--3647936	31	2.0	31	83	0	79	37	0	16	46	1.47
3648910--3648949	21	1.9	21	85	10	55	42	2	7	47	1.45
3648918--3648969	20	2.4	21	79	17	54	38	3	5	51	1.44
3649063--3649151	31	3.0	29	75	8	79	32	12	15	39	1.85
3652112--3652210	42	2.4	42	77	6	101	41	19	26	13	1.87
3655823--3655874	25	2.1	25	85	7	70	42	13	7	36	1.73
3657084--3657108	11	2.3	11	100	0	50	64	0	28	8	1.22
3659612--3659707	45	2.3	41	82	10	106	17	21	21	38	1.93
3667551--3667693	54	2.6	54	100	0	286	27	13	20	37	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205