genome.fa.s19.2.7.7.80.10.50.1000.43.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  61124829

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   

This is table  43  of  205  ( 24568 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12836879--12836918	8	4.8	9	90	6	50	80	0	20	0	0.72
12837518--12837583	29	2.2	31	84	10	84	39	0	3	57	1.14
12837893--12837928	18	2.0	18	89	10	56	41	5	19	33	1.75
12837974--12838029	27	2.2	25	83	6	67	35	3	12	48	1.58
12838006--12838077	31	2.4	30	79	9	83	37	9	9	43	1.71
12838389--12838428	20	2.0	20	100	0	80	55	10	0	35	1.34
12858474--12858549	20	3.9	19	72	14	66	56	6	1	35	1.34
12879475--12879507	15	2.1	16	88	5	50	42	18	9	30	1.81
12881234--12881278	7	6.3	7	84	5	63	53	2	0	44	1.13
12881271--12881304	16	2.1	16	94	0	59	47	8	0	44	1.34
12883538--12883596	25	2.4	25	88	5	84	20	28	18	32	1.96
12897498--12897555	24	2.4	24	79	0	71	18	25	20	34	1.96
12901557--12901597	21	2.0	20	86	9	57	19	14	17	48	1.81
12902703--12902727	13	1.9	13	100	0	50	44	24	16	16	1.86
12905504--12905780	112	2.5	112	83	4	335	31	17	23	28	1.97
12905579--12905965	190	2.1	186	81	4	447	30	18	23	27	1.98
12905787--12906399	115	5.4	114	79	6	578	30	19	23	26	1.98
12905787--12906399	228	2.7	227	83	4	741	30	19	23	26	1.98
12905857--12906399	229	2.4	227	84	4	707	30	18	23	26	1.98
12906660--12906744	7	12.0	7	76	7	64	14	0	40	45	1.44
12907776--12907810	15	2.2	16	90	5	54	37	0	14	48	1.44
12909666--12909722	30	1.9	30	88	0	87	33	8	3	54	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12909714--12909753	16	2.6	16	84	4	55	42	0	7	50	1.30
12909686--12909829	61	2.4	62	83	5	177	43	3	6	46	1.47
12909673--12909765	17	5.9	17	69	16	56	38	5	6	49	1.51
12909989--12910034	7	6.6	7	78	16	51	60	10	0	28	1.30
12909989--12910034	15	3.3	15	82	11	62	60	10	0	28	1.30
12909977--12910143	27	6.7	26	70	13	111	49	13	0	36	1.46
12910030--12910085	21	2.6	21	82	2	67	39	17	1	41	1.60
12909910--12910157	96	2.6	96	94	0	426	46	14	2	36	1.58
12910059--12910130	22	3.3	23	72	16	64	52	13	0	33	1.41
12910177--12910454	9	32.1	9	62	23	62	46	20	2	30	1.63
12910177--12910236	25	2.4	25	88	0	93	48	21	0	30	1.51
12910212--12910249	16	2.4	16	91	8	60	47	26	0	26	1.52
12910621--12910785	9	19.2	9	76	14	161	43	20	0	35	1.57
12910622--12910792	25	6.7	26	80	9	137	43	20	0	35	1.56
12910619--12910781	84	1.9	85	85	7	224	42	21	0	34	1.58
12915866--12915916	21	2.4	21	83	0	66	31	15	49	3	1.63
12916471--12916696	42	5.3	42	85	1	281	34	18	21	26	1.96
12918303--12918471	30	5.7	30	80	6	112	39	12	24	23	1.89
12918244--12918433	30	6.4	30	81	6	156	41	13	25	20	1.88
12918214--12918469	119	2.2	119	86	1	352	39	14	24	21	1.90
12918273--12918463	89	2.1	90	80	2	215	40	13	24	21	1.89
12918422--12918491	30	2.3	30	92	0	122	35	12	27	24	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12918214--12918505	119	2.5	119	84	2	329	39	14	25	21	1.91
12922674--12922713	15	2.4	18	88	12	59	72	2	17	7	1.19
12925812--12925907	2	48.5	2	89	6	142	2	45	1	51	1.20
12926819--12926874	25	2.2	25	83	0	67	44	16	19	19	1.87
12927782--12928026	50	4.9	50	78	3	226	23	28	20	28	1.99
12927781--12928114	50	6.6	50	77	5	217	24	27	19	28	1.98
12930653--12930703	23	2.1	26	85	10	72	58	3	0	37	1.16
12932687--12932741	26	2.1	27	83	10	69	56	12	9	21	1.64
12939634--12939696	33	1.9	33	90	0	99	25	17	19	38	1.93
12940543--12940597	26	2.1	28	86	10	80	54	12	12	20	1.70
12943352--12943402	13	3.6	13	76	19	57	9	35	35	19	1.85
12943346--12943414	30	2.3	30	100	0	138	15	37	31	14	1.88
12943774--12943822	24	2.0	24	100	0	98	40	20	0	38	1.53
12951523--12951547	13	1.9	13	100	0	50	8	32	28	32	1.86
12953939--12954006	24	2.8	24	68	16	68	27	10	22	39	1.86
12955177--12955323	56	2.6	55	81	12	149	31	11	21	36	1.89
12958529--12958644	61	1.9	59	89	3	178	42	3	5	49	1.42
12962522--12962555	12	2.8	12	90	0	59	26	38	5	29	1.80
12962516--12962554	15	2.6	15	83	0	51	25	35	7	30	1.84
12971859--12972079	74	3.0	73	88	4	318	54	7	25	12	1.64
12972751--12972852	52	2.0	51	83	9	127	35	23	9	31	1.87
12973081--12973737	205	3.2	203	86	5	830	40	17	12	29	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12981589--12981912	120	2.7	120	97	0	603	42	0	4	51	1.29
12982128--12982174	16	2.9	16	90	0	67	25	31	4	38	1.75
12987804--12987861	17	3.3	17	83	7	71	31	1	3	63	1.21
12991441--12991545	52	2.0	52	90	0	165	40	0	7	51	1.37
12993128--12993276	63	2.4	63	82	0	181	35	30	8	25	1.85
12997002--12997031	12	2.5	12	94	0	51	40	13	6	40	1.71
12997273--12997326	26	2.1	25	82	3	63	29	7	0	62	1.22
12997313--12997343	12	2.5	12	94	5	53	22	6	0	70	1.09
12997281--12997343	25	2.5	25	82	12	67	25	7	0	66	1.18
13002191--13002226	16	2.2	16	90	0	54	86	8	0	5	0.72
13003508--13004443	131	7.1	131	91	0	1458	28	19	25	26	1.98
13004433--13004621	44	4.4	42	71	16	136	29	21	21	28	1.99
13004433--13004674	44	5.7	40	71	14	128	28	20	22	28	1.99
13004411--13004689	129	2.2	129	92	0	450	31	21	21	25	1.98
13004411--13004752	129	2.7	129	86	3	386	30	21	21	26	1.98
13006318--13006350	16	2.0	17	88	5	50	27	6	0	66	1.15
13006704--13006757	26	2.1	25	82	3	63	29	7	0	62	1.22
13006744--13006774	12	2.5	12	94	5	53	22	6	0	70	1.09
13006712--13006774	25	2.5	25	82	12	67	25	7	0	66	1.18
13007871--13007895	13	1.9	13	100	0	50	68	0	0	32	0.90
13009245--13009291	24	2.0	24	91	0	76	10	40	21	27	1.86
13010263--13010497	115	2.0	117	95	4	429	34	12	11	41	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13013003--13013062	30	1.9	31	86	6	86	43	6	1	48	1.39
13015973--13016003	16	1.9	16	93	0	53	25	19	22	32	1.97
13019308--13019340	13	2.5	13	90	0	57	66	0	18	15	1.25
13020646--13022337	44	38.4	44	81	4	1678	29	15	24	29	1.96
13020646--13022365	132	13.0	134	90	3	2028	29	15	25	29	1.96
13032730--13032773	14	3.0	14	90	6	61	79	0	4	15	0.89
13033844--13033907	31	2.1	31	100	0	128	26	39	12	21	1.89
13036546--13036668	49	2.5	49	76	6	124	30	20	26	22	1.98
13037468--13037504	19	2.1	19	85	10	51	35	0	13	51	1.41
13037906--13037991	42	2.0	42	97	0	163	16	20	17	45	1.86
13040643--13040679	19	2.1	19	85	10	51	35	0	13	51	1.41
13042720--13042751	15	2.1	15	94	0	55	15	6	9	68	1.36
13049058--13049171	56	2.0	56	96	0	210	37	12	5	44	1.64
13053454--13053532	39	2.0	39	97	0	149	22	26	5	45	1.73
13056538--13056566	15	1.9	15	100	0	58	44	27	13	13	1.82
13063708--13063851	41	3.5	41	92	0	225	26	22	22	28	1.99
13071471--13071683	114	1.9	114	94	0	381	26	13	23	36	1.92
13074319--13074517	105	2.0	98	86	8	274	38	10	17	33	1.84
13077934--13078002	26	2.5	26	73	15	68	63	2	4	28	1.28
13078342--13078417	35	2.1	36	80	4	91	39	22	5	32	1.76
13082140--13082278	40	3.5	40	76	6	113	30	23	18	27	1.98
13082145--13082279	41	3.4	41	74	11	129	31	23	18	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13082438--13082484	24	2.0	24	84	16	62	51	17	0	31	1.46
13083151--13083199	23	2.1	23	84	3	62	0	28	0	71	0.86
13083146--13083225	4	20.0	4	73	14	58	1	26	2	70	1.08
13091981--13092021	21	2.0	21	85	0	55	60	7	12	19	1.54
13094756--13094797	22	1.9	22	95	0	75	7	23	16	52	1.68
13102153--13102198	16	2.8	17	87	6	60	36	30	6	26	1.82
13103356--13103386	16	1.9	16	93	0	53	32	38	0	29	1.57
13106415--13106557	33	4.3	33	72	7	110	25	47	2	25	1.63
13107139--13107171	7	4.7	7	96	0	57	69	15	0	15	1.19
13107354--13107398	16	2.8	16	82	3	63	31	4	24	40	1.75

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205