genome.fa.s19.2.7.7.80.10.50.1000.180.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  61124829

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   

This is table  180  of  205  ( 24568 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53488405--53488668	40	6.7	40	89	5	360	25	27	21	25	1.99
53496655--53496916	39	6.7	40	88	7	337	24	27	22	25	2.00
53508864--53509111	124	2.0	124	100	0	496	43	20	9	26	1.82
53509561--53509637	23	3.4	23	83	3	95	38	20	22	18	1.93
53509955--53510004	25	2.0	25	84	11	66	36	22	0	42	1.54
53510376--53510400	11	2.3	11	100	0	50	28	20	0	52	1.47
53510795--53510829	12	3.0	11	91	8	52	0	22	0	77	0.78
53514689--53514743	22	2.5	21	91	2	83	52	23	5	18	1.65
53515277--53515312	5	7.4	5	87	6	56	77	0	0	22	0.76
53515277--53515312	14	2.5	14	90	4	54	77	0	0	22	0.76
53537691--53537741	21	2.4	21	93	0	84	25	27	11	35	1.91
53539443--53539501	28	2.1	28	93	0	100	45	8	15	30	1.75
53539554--53539657	54	1.9	54	88	0	154	37	6	8	47	1.61
53540026--53540052	9	3.0	9	100	0	54	33	0	11	55	1.35
53540714--53540796	29	2.9	29	90	0	130	34	25	10	28	1.90
53549266--53549306	16	2.4	17	88	8	57	24	7	2	65	1.30
53549365--53549609	43	5.7	43	87	0	330	30	30	17	21	1.96
53550494--53551028	23	23.4	23	71	13	268	40	24	5	29	1.77
53550540--53550864	91	3.6	91	94	0	535	41	24	5	29	1.77
53550722--53551028	137	2.2	137	91	2	492	40	24	4	30	1.76
53552032--53552058	14	1.9	14	100	0	54	29	37	22	11	1.89
53554054--53554190	40	3.4	40	82	2	141	17	21	23	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53554079--53554185	40	2.7	40	88	4	146	15	26	26	31	1.96
53557564--53557601	19	2.0	19	85	10	51	26	2	13	57	1.49
53561132--53561171	19	2.1	19	100	0	80	37	5	10	47	1.59
53562487--53562925	125	3.5	125	91	0	698	33	18	20	28	1.96
53565803--53565853	16	2.8	19	67	27	56	37	0	11	50	1.39
53565769--53565963	102	1.9	102	96	0	363	38	7	9	44	1.65
53566040--53566107	21	3.3	21	85	4	102	26	0	30	42	1.56
53566048--53566110	20	3.1	20	88	2	99	25	0	30	44	1.54
53566662--53566704	18	2.4	18	88	0	59	44	9	27	18	1.80
53567346--53567377	7	4.6	7	100	0	64	56	15	0	28	1.40
53567558--53567598	21	2.0	21	85	9	57	56	7	2	34	1.40
53568585--53568634	11	4.5	11	85	14	68	44	0	34	22	1.53
53570930--53570977	17	2.7	18	81	15	55	37	8	0	54	1.31
53571346--53571380	16	2.2	16	100	0	70	31	17	17	34	1.93
53572397--53572436	20	2.0	20	85	0	53	47	2	10	40	1.50
53572817--53572880	32	2.0	32	100	0	128	43	9	12	34	1.75
53574216--53574267	19	2.6	20	72	6	52	42	17	7	32	1.77
53579325--53579365	20	2.0	20	85	0	55	26	21	17	34	1.95
53580254--53580307	21	2.7	20	82	5	65	38	16	16	27	1.90
53584867--53584904	15	2.4	16	82	8	51	65	5	2	26	1.27
53585334--53585372	17	2.3	17	95	0	69	30	25	17	25	1.97
53589144--53589232	45	2.0	45	97	2	171	31	4	22	41	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53589158--53589250	45	2.1	45	87	2	134	34	3	20	41	1.68
53590378--53590522	41	3.5	41	97	1	265	28	20	28	22	1.98
53600577--53600618	12	3.4	12	81	15	50	59	0	9	30	1.29
53602404--53602916	142	3.6	142	89	1	758	28	21	17	32	1.96
53602681--53602968	44	6.3	44	70	14	172	27	22	18	31	1.97
53604623--53605708	543	2.0	543	100	0	2172	29	23	18	29	1.98
53608114--53608139	13	2.0	13	100	0	52	23	0	30	46	1.53
53608831--53608868	13	2.7	14	88	8	51	2	39	0	57	1.12
53612057--53612104	19	2.5	19	83	9	62	43	10	20	25	1.83
53615819--53615860	12	3.4	12	81	15	50	59	0	9	30	1.29
53618935--53618974	19	2.1	19	85	0	53	72	12	0	15	1.12
53624649--53624681	17	1.9	17	93	0	57	51	6	27	15	1.66
53632510--53632579	26	2.7	26	86	2	86	30	22	25	21	1.99
53639102--53639132	15	2.1	15	93	0	53	48	35	0	16	1.46
53639656--53639726	26	2.7	26	86	4	90	29	22	25	22	1.99
53641262--53641300	13	2.7	14	88	11	53	7	30	0	61	1.24
53641410--53641474	18	3.4	18	67	24	53	18	1	15	64	1.37
53643940--53644004	5	13.0	5	100	0	130	20	0	20	60	1.37
53644016--53644042	13	2.1	13	100	0	54	29	22	0	48	1.51
53649350--53649374	6	4.2	6	100	0	50	16	0	0	84	0.63
53649419--53649458	18	2.2	18	86	8	55	25	0	7	67	1.16
53655264--53655305	3	14.0	3	100	0	84	66	0	0	33	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53658024--53658088	31	2.3	27	80	15	76	44	6	6	43	1.54
53661721--53661753	17	2.0	17	88	5	50	0	24	0	75	0.80
53661714--53661769	9	6.5	8	78	17	51	0	23	1	75	0.90
53666275--53666430	86	1.8	83	85	6	215	35	22	14	27	1.93
53667628--53667662	15	2.4	15	90	4	54	48	0	8	42	1.33
53671604--53671682	4	19.5	4	75	19	67	25	3	0	70	1.03
53671607--53671673	21	3.5	20	78	21	72	22	4	0	73	1.01
53672816--53673004	101	1.8	100	84	9	256	27	14	25	32	1.95
53673607--53673641	15	2.4	15	90	4	54	48	0	8	42	1.33
53673645--53673677	18	1.9	17	88	11	50	30	0	12	57	1.35
53684495--53684521	6	4.5	6	100	0	54	44	0	0	55	0.99
53690345--53690392	20	2.3	21	82	7	62	52	0	0	47	1.00
53691112--53691158	19	2.6	18	83	6	58	48	2	2	46	1.25
53691713--53691803	31	2.9	31	81	3	94	40	9	10	38	1.74
53692825--53692849	13	1.9	13	100	0	50	32	0	4	64	1.12
53694784--53694820	13	2.9	13	81	18	51	43	13	0	43	1.44
53710753--53710800	22	2.2	22	82	14	55	29	18	20	31	1.97
53712660--53712950	67	4.3	67	78	7	306	36	16	19	27	1.93
53712660--53712939	134	2.1	134	99	0	551	37	15	19	26	1.92
53714975--53715011	18	2.1	19	85	10	51	24	5	10	59	1.52
53714985--53715232	123	2.0	123	95	0	442	27	16	13	41	1.86
53719541--53720065	131	4.0	131	90	1	804	24	24	20	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53732774--53733123	124	2.8	124	92	0	574	33	21	15	29	1.94
53736777--53737839	533	2.0	533	95	0	1892	44	16	14	24	1.86
53739639--53739793	70	2.2	72	88	5	226	40	4	37	17	1.70
53743464--53743675	111	1.9	111	96	0	388	35	20	22	21	1.96
53751282--53751371	23	4.0	22	76	13	85	18	6	22	52	1.69
53756258--53756466	92	2.3	91	86	5	278	45	3	3	46	1.39
53756394--53756441	26	1.9	25	84	16	64	45	0	2	52	1.12
53756471--53756664	54	3.4	54	70	18	147	41	2	3	52	1.32
53756572--53756738	38	4.2	37	65	25	101	43	1	4	50	1.29
53756556--53756746	59	3.2	58	69	23	162	42	1	5	51	1.31
53756482--53756749	120	2.2	120	88	2	403	42	2	4	51	1.33
53756482--53756816	120	2.8	119	79	10	294	42	2	4	50	1.33
53756892--53756996	44	2.5	40	76	15	113	31	29	4	34	1.78
53756890--53756999	45	2.6	44	81	8	131	31	29	5	33	1.80
53756980--53757033	16	3.4	16	94	0	90	33	38	0	27	1.57
53758248--53758376	22	5.5	22	72	16	107	43	0	27	29	1.55
53758212--53758378	73	2.3	73	91	1	264	44	0	26	28	1.58
53759637--53759694	28	2.1	28	96	0	107	58	12	17	12	1.63
53760200--53760239	20	2.0	21	90	5	64	27	0	2	70	1.01
53772001--53772047	23	2.1	23	88	4	69	38	0	17	44	1.48
53774363--53774387	7	3.6	7	100	0	50	84	0	0	16	0.63
53776842--53776928	45	1.9	45	97	0	165	21	18	10	49	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53785927--53786112	101	1.8	101	87	5	277	25	16	26	31	1.96
53785923--53786119	51	3.9	50	77	5	193	25	15	27	30	1.96
53797016--53797337	28	11.5	28	91	0	484	33	26	13	26	1.94
53807765--53807804	9	4.4	9	87	0	62	47	15	10	27	1.77
53810595--53810655	26	2.3	26	80	5	70	31	4	3	60	1.34
53810594--53810656	27	2.4	25	77	12	65	33	4	3	58	1.35
53815341--53815385	20	2.2	20	88	0	63	20	4	6	68	1.29
53819602--53819712	30	3.8	28	77	15	98	45	2	22	28	1.66
53819617--53819712	30	3.2	29	85	5	138	45	3	22	28	1.67
53819716--53819814	48	2.0	49	96	1	182	37	4	4	54	1.38

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205