genome.fa.s19.2.7.7.80.10.50.1000.148.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  61124829

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   

This is table  148  of  205  ( 24568 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44919904--44920089	40	4.6	40	80	7	189	33	24	15	27	1.95
44919901--44920081	81	2.2	81	83	0	229	33	24	14	26	1.95
44921107--44921193	43	2.0	43	90	0	138	48	11	5	34	1.63
44925500--44925552	26	2.0	27	85	10	74	58	0	5	35	1.22
44930118--44930177	24	2.4	24	83	5	66	68	1	0	30	0.99
44930115--44930288	26	6.8	26	82	2	190	60	3	4	31	1.31
44937973--44938015	20	2.2	20	83	8	52	34	9	9	46	1.68
44938523--44938571	20	2.5	19	80	9	53	51	12	4	32	1.58
44938774--44938859	43	2.0	42	93	2	145	15	17	33	32	1.91
44950393--44950455	15	4.6	14	77	16	53	22	6	0	71	1.08
44954772--44954966	55	3.6	53	80	9	198	22	24	17	35	1.95
44956763--44956810	10	4.8	10	82	12	55	22	8	2	66	1.29
44960204--44960288	39	2.2	39	95	0	152	21	20	9	49	1.76
44963644--44963673	5	5.8	5	92	7	51	83	0	0	16	0.65
44968091--44968123	16	2.1	16	94	5	59	81	0	0	18	0.68
44968091--44968123	5	6.4	5	93	6	57	81	0	0	18	0.68
44971778--44971860	40	2.1	40	90	4	132	37	9	24	28	1.87
44974111--44974145	14	2.6	14	90	4	54	54	14	2	28	1.54
44976331--44976502	46	3.7	45	76	11	159	31	19	25	23	1.98
44976368--44976542	94	1.9	94	85	0	242	30	18	26	24	1.98
44976471--44976644	93	1.9	93	86	2	251	27	21	27	24	1.99
44985423--44985636	94	2.3	94	80	3	234	29	21	26	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44985657--44985781	49	2.5	49	83	6	155	27	21	28	22	1.99
44993434--44993534	53	1.9	53	89	4	159	31	24	18	24	1.98
44993964--44994086	43	2.9	43	91	1	185	34	26	15	24	1.95
45001946--45001989	24	1.9	22	86	9	61	29	22	2	45	1.65
45001954--45002012	31	1.9	30	83	10	75	28	20	1	49	1.59
45002798--45002894	49	2.0	48	100	0	185	26	18	16	37	1.92
45007520--45007630	54	2.0	55	94	1	197	34	12	18	35	1.88
45010759--45010904	41	3.6	41	78	4	179	28	28	21	20	1.98
45015232--45015273	18	2.3	18	100	0	84	33	4	19	42	1.72
45016412--45016822	47	8.7	47	97	0	750	32	8	30	29	1.86
45016941--45017019	37	2.1	37	90	0	122	24	18	31	25	1.98
45018243--45018358	40	2.9	40	81	0	142	23	21	29	25	1.99
45031611--45031635	12	2.1	12	100	0	50	56	8	16	20	1.65
45032415--45032446	14	2.3	14	94	0	55	21	3	12	62	1.43
45033080--45033196	39	3.0	39	82	5	128	13	17	27	41	1.88
45035894--45036011	62	1.9	59	85	8	157	50	4	4	40	1.41
45038503--45038533	4	8.0	4	92	7	55	48	0	0	51	1.00
45048746--45048780	17	2.1	17	100	0	70	20	17	17	45	1.85
45055280--45055347	29	2.3	29	84	0	91	29	23	10	36	1.88
45055741--45055813	16	4.5	16	68	20	53	39	2	2	54	1.29
45056801--45056845	7	6.4	7	100	0	90	15	31	13	40	1.86
45059136--45059169	17	2.0	17	100	0	68	41	11	17	29	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45068664--45068693	14	2.1	15	93	6	53	50	13	0	36	1.42
45069652--45069692	18	2.2	19	91	4	66	34	2	0	63	1.08
45069782--45069823	15	2.9	15	82	13	52	33	0	2	64	1.07
45075794--45075837	19	2.3	20	84	7	56	27	22	11	38	1.88
45078421--45078450	8	3.6	8	91	8	51	73	13	0	13	1.10
45080636--45080912	83	3.3	83	70	19	275	31	19	20	28	1.97
45080635--45081009	170	2.2	170	96	0	687	31	19	21	28	1.97
45080981--45081142	87	1.9	87	84	2	218	30	20	23	25	1.99
45080608--45081130	44	12.2	42	69	11	215	31	19	21	27	1.98
45080805--45081246	218	2.0	213	79	7	464	30	19	22	26	1.98
45084004--45084047	24	1.9	24	86	9	65	52	0	11	36	1.38
45087420--45087475	21	2.7	21	88	0	85	25	8	35	30	1.86
45096490--45096544	21	2.5	23	83	13	64	58	1	0	40	1.09
45097984--45098013	6	4.8	6	95	4	51	53	0	0	46	1.00
45106464--45106496	11	3.1	11	82	8	50	9	18	12	60	1.57
45114588--45114809	27	8.3	27	84	4	279	19	15	20	45	1.86
45114588--45114809	80	2.8	80	82	2	284	19	15	20	45	1.86
45114586--45114809	53	4.2	54	84	2	283	19	15	20	45	1.86
45115484--45115530	21	2.2	21	92	0	76	34	31	0	34	1.58
45117087--45117123	2	18.5	2	100	0	74	0	0	48	51	1.00
45123369--45123411	19	2.3	19	83	0	59	32	9	11	46	1.72
45125324--45125373	23	2.2	23	88	0	73	36	16	26	22	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45132251--45132447	41	4.8	41	91	0	286	27	23	19	29	1.98
45135558--45135646	34	2.6	34	84	10	103	24	19	19	37	1.94
45138324--45138359	14	2.4	15	86	13	56	72	19	5	2	1.17
45143998--45144037	15	2.6	16	80	4	55	35	2	20	42	1.65
45156928--45157790	433	2.0	432	92	1	1433	31	13	11	43	1.79
45157792--45158017	118	1.9	118	96	0	416	31	4	10	53	1.55
45157837--45158019	58	3.1	57	63	22	135	33	4	9	51	1.56
45158109--45158275	83	2.0	83	91	5	277	44	16	9	29	1.79
45166947--45167000	22	2.5	22	85	11	67	29	20	14	35	1.93
45171640--45171712	25	2.9	25	75	0	74	35	20	24	19	1.95
45184792--45185506	44	16.2	44	64	16	221	30	20	25	24	1.99
45184749--45185533	132	6.0	132	91	1	1208	30	19	25	24	1.98
45184749--45185533	265	3.0	264	92	1	1251	30	19	25	24	1.98
45184749--45185533	397	2.0	390	92	2	1302	30	19	25	24	1.98
45187435--45187469	13	2.6	13	90	4	52	17	2	5	74	1.14
45190713--45191225	155	3.3	154	78	8	423	30	10	22	37	1.87
45198714--45198816	21	4.9	21	81	0	134	7	43	16	32	1.76
45198714--45198823	42	2.6	42	91	0	166	8	41	17	32	1.79
45203979--45204022	16	2.8	16	85	0	61	36	0	15	47	1.46
45203990--45204062	25	2.7	25	81	10	74	34	2	16	46	1.61
45204047--45204685	9	75.3	9	69	19	251	38	1	16	43	1.57
45204049--45204391	16	20.8	16	81	8	329	36	0	19	42	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45204516--45204553	7	5.1	7	87	12	58	28	0	26	44	1.54
45204506--45204558	16	3.3	16	87	12	74	32	0	24	43	1.55
45204507--45204553	23	2.0	23	100	0	94	29	0	25	44	1.54
45204577--45204862	9	30.6	9	67	22	71	39	1	10	49	1.45
45204690--45204843	38	4.1	38	96	3	292	42	0	7	50	1.31
45204876--45204928	16	3.3	16	79	12	56	32	1	22	43	1.64
45204879--45204925	23	2.0	23	95	0	85	31	2	21	44	1.64
45209764--45210165	41	9.8	40	81	4	259	33	26	24	15	1.95
45209764--45210165	82	4.9	82	84	3	351	33	26	24	15	1.95
45209865--45210165	123	2.4	122	84	5	390	34	28	23	13	1.93
45212926--45212970	16	2.7	17	79	6	56	60	0	0	40	0.97
45213681--45213730	25	2.0	25	88	0	73	60	16	6	18	1.55
45217151--45217197	22	2.1	22	100	0	94	51	4	4	40	1.41
45217698--45218149	136	3.3	133	68	18	399	44	5	6	43	1.53
45217674--45218222	275	2.0	275	98	0	1062	44	6	7	42	1.57
45218312--45218346	7	4.9	7	96	3	61	31	0	0	68	0.90
45219992--45220137	68	2.1	68	87	2	204	41	11	12	34	1.79
45226654--45226817	42	4.0	41	83	2	202	24	23	20	31	1.98
45227133--45227203	21	3.4	21	76	0	79	9	45	12	32	1.75
45235505--45235614	19	6.9	16	71	22	88	36	18	14	30	1.91
45235529--45235608	14	5.4	14	69	19	63	35	18	13	32	1.90
45236091--45236357	148	1.8	148	83	0	354	38	22	15	23	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45236871--45236903	14	2.3	15	89	5	50	45	21	0	33	1.52
45237510--45237566	20	2.8	21	72	5	53	47	28	7	17	1.73
45237683--45238387	115	6.2	114	79	4	679	27	23	18	29	1.98
45237769--45238382	229	2.7	227	83	4	684	28	23	18	29	1.97
45238212--45238593	205	1.9	204	81	6	477	27	22	18	31	1.97
45240452--45240494	8	5.5	8	80	5	52	53	6	0	39	1.28
45240443--45240488	23	2.0	24	95	4	85	50	4	0	45	1.21
45242379--45242472	40	2.4	39	92	1	152	59	13	1	25	1.41
45242848--45242877	15	1.9	16	93	6	53	33	0	3	63	1.11
45243637--45243679	20	2.0	21	82	8	52	39	11	0	48	1.40

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205