genome.fa.s19.2.7.7.80.10.50.1000.152.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  61124829

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   

This is table  152  of  205  ( 24568 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45884455--45884707	44	5.7	45	77	7	196	28	24	18	28	1.98
45884455--45884707	90	2.8	88	77	7	260	28	24	18	28	1.98
45886628--45886656	12	2.3	13	94	5	51	20	0	0	79	0.74
45886649--45886771	45	2.8	45	78	1	131	18	19	17	43	1.88
45890178--45890212	16	2.2	16	94	0	61	48	20	11	20	1.79
45892275--45892361	3	29.0	3	77	0	57	63	8	3	25	1.38
45904294--45904428	3	44.3	3	74	8	103	29	7	1	61	1.32
45908117--45908145	8	3.6	8	100	0	58	89	0	0	10	0.48
45908597--45908645	17	2.8	17	87	3	62	77	0	18	4	0.92
45909566--45909800	89	2.6	89	80	0	272	28	21	23	26	1.99
45909855--45910337	50	9.7	50	65	1	205	31	21	21	26	1.98
45909874--45910402	100	5.3	100	88	1	713	30	20	21	26	1.98
45910222--45910386	50	3.3	49	68	6	125	28	21	23	26	1.99
45910421--45910880	85	5.3	88	78	7	239	30	20	21	27	1.98
45910421--45910823	129	3.1	129	84	3	447	30	19	21	28	1.98
45910421--45910837	214	1.9	214	92	0	692	30	19	21	28	1.98
45910414--45910967	44	12.8	43	69	13	255	30	20	20	27	1.98
45910632--45910927	129	2.3	129	85	5	389	30	19	21	28	1.98
45912805--45912928	3	41.0	3	72	10	83	29	7	2	60	1.36
45913032--45913116	21	4.2	20	70	22	63	20	4	2	72	1.13
45913032--45913098	29	2.3	29	80	14	75	20	2	1	74	1.03
45913047--45913097	8	6.6	8	74	17	54	23	1	1	72	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45913050--45913104	28	1.9	29	85	10	78	20	1	3	74	1.06
45913236--45913262	12	2.2	12	100	0	54	33	0	0	66	0.92
45914930--45914959	6	5.0	6	100	0	60	33	50	16	0	1.46
45916243--45916276	4	8.0	4	90	9	50	23	0	2	73	0.97
45916226--45916285	22	2.7	22	73	19	61	26	0	6	66	1.16
45925448--45925749	144	2.1	144	89	2	455	35	19	22	23	1.96
45928908--45928956	24	2.1	23	84	3	62	46	4	2	46	1.33
45931169--45931215	23	2.0	23	100	0	94	53	21	8	17	1.70
45931350--45931422	21	3.5	21	69	3	58	20	26	32	20	1.97
45936603--45936769	42	4.0	42	82	8	187	32	20	22	24	1.98
45936605--45936769	85	1.9	85	81	11	196	31	21	22	24	1.98
45937217--45937265	21	2.3	21	92	0	80	2	40	20	36	1.64
45937217--45937285	21	3.3	21	87	0	75	1	39	20	39	1.61
45940244--45940346	7	14.0	7	74	12	64	32	46	1	19	1.61
45940245--45940349	22	4.7	22	78	11	99	30	48	1	19	1.59
45940245--45940349	15	6.6	15	77	16	104	30	48	1	19	1.59
45940731--45940777	24	2.0	22	84	8	58	53	4	2	40	1.32
45940972--45941184	41	5.2	40	72	9	142	33	28	18	20	1.96
45940972--45941184	83	2.6	83	78	7	211	33	28	18	20	1.96
45946497--45946801	156	1.9	159	84	4	404	34	14	15	35	1.88
45947412--45947445	16	2.1	16	100	0	68	26	17	23	32	1.97
45949085--45949196	33	3.4	32	67	16	84	27	50	0	22	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45949058--45949219	66	2.5	66	83	0	207	29	46	3	21	1.66
45949142--45949186	24	1.9	23	82	13	56	31	51	0	17	1.46
45950102--45950222	29	4.2	29	79	4	129	52	33	1	13	1.50
45952105--45952161	26	2.2	26	84	6	71	40	7	3	49	1.47
45956153--45956584	143	3.0	143	97	0	792	40	9	21	28	1.84
45961539--45961635	51	1.9	51	97	0	185	17	25	27	28	1.98
45962624--45962653	13	2.3	13	94	0	51	50	13	3	33	1.58
45962866--45962923	30	1.9	30	86	6	82	27	24	6	41	1.80
45976270--45976329	20	3.0	20	97	0	111	45	11	8	35	1.71
45976260--45976354	40	2.3	40	80	10	104	46	12	6	34	1.67
45983690--45983719	6	5.0	6	100	0	60	16	16	16	50	1.79
45988123--45988160	18	2.1	18	85	9	51	18	13	7	60	1.56
45988203--45988259	25	2.4	24	80	8	71	28	10	7	54	1.60
45988155--45988264	12	8.8	12	72	11	69	27	12	8	51	1.68
45989977--45990001	13	1.9	13	100	0	50	64	4	0	32	1.12
45990580--45990615	18	1.9	19	88	5	56	36	0	8	55	1.30
45990574--45990667	19	5.0	19	74	13	79	31	3	5	59	1.35
45990635--45990678	18	2.5	19	82	14	58	29	2	0	68	1.02
45994307--45994372	6	11.0	6	90	0	105	16	16	18	48	1.82
46001492--46001531	16	2.5	16	95	0	71	35	35	5	25	1.78
46002251--46002341	9	9.7	9	81	9	83	24	6	28	40	1.80
46002257--46002304	20	2.4	20	92	0	78	25	4	27	43	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46002274--46002340	18	3.6	18	89	4	98	20	8	32	37	1.84
46002274--46002340	27	2.4	28	90	5	100	20	8	32	37	1.84
46002677--46002740	26	2.6	24	77	18	60	60	4	4	29	1.37
46004248--46004282	19	1.9	17	88	11	52	22	11	0	65	1.24
46006117--46006169	17	2.8	18	80	13	63	62	0	0	37	0.96
46010613--46010908	43	6.9	43	79	3	301	27	24	19	28	1.99
46010624--46010908	86	3.3	86	85	0	338	27	23	20	29	1.99
46011201--46011257	21	2.7	21	86	0	87	1	42	17	38	1.60
46016756--46017165	9	43.9	9	66	17	124	35	1	16	46	1.56
46016756--46016975	47	4.4	47	75	17	201	33	0	19	47	1.53
46016786--46017013	55	4.1	56	80	14	251	33	0	17	47	1.54
46016758--46017010	109	2.4	103	84	8	339	34	0	18	46	1.55
46018737--46018873	63	2.2	63	85	0	175	23	22	29	24	1.99
46021730--46021778	17	2.7	17	84	9	53	32	0	8	59	1.27
46021751--46021791	19	2.2	19	86	8	57	29	2	2	65	1.18
46021859--46021906	18	2.7	18	83	6	53	29	4	0	66	1.10
46022230--46022256	12	2.2	12	100	0	54	22	0	7	70	1.12
46024914--46024945	2	16.0	2	100	0	64	50	0	0	50	1.00
46030112--46030161	25	2.0	25	88	7	75	22	32	18	28	1.97
46034611--46034660	25	2.0	25	88	7	75	22	32	18	28	1.97
46036308--46036353	17	2.8	16	74	6	56	32	15	8	43	1.77
46037141--46037221	32	2.5	32	80	11	85	13	38	25	22	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46039543--46039694	27	5.6	27	93	3	232	30	28	13	26	1.94
46039543--46039719	55	3.2	55	90	0	264	31	29	13	25	1.94
46048237--46048333	27	3.6	27	90	2	140	29	28	13	27	1.94
46054710--46054735	12	2.2	12	100	0	52	23	0	0	76	0.78
46059708--46059775	10	6.6	10	68	18	50	64	1	1	32	1.11
46059671--46059744	39	1.9	38	89	8	114	59	5	2	32	1.34
46059708--46059797	11	8.4	11	75	17	64	60	1	3	35	1.21
46059739--46059772	17	2.0	17	88	0	50	64	0	0	35	0.94
46059730--46059817	42	2.2	41	85	6	126	64	0	2	32	1.06
46063127--46063173	19	2.5	19	76	13	51	31	4	2	61	1.27
46063216--46063250	10	3.5	10	88	11	54	20	2	0	77	0.90
46063730--46064069	187	1.8	187	98	0	653	18	18	13	49	1.79
46065157--46065419	41	6.6	41	85	4	340	22	20	27	29	1.98
46065196--46065410	119	1.8	117	87	2	322	20	20	27	31	1.97
46065157--46065419	78	3.3	77	85	6	321	22	20	27	29	1.98
46065773--46065807	15	2.4	14	86	9	52	22	0	37	40	1.55
46065794--46065834	21	2.0	20	85	4	55	19	0	41	39	1.52
46065938--46065998	7	8.6	7	78	3	59	21	0	31	47	1.51
46065939--46066004	29	2.3	29	78	5	71	22	0	31	45	1.53
46072512--46072561	16	3.0	16	76	18	57	70	2	2	26	1.09
46072526--46072571	20	2.4	19	81	3	56	65	2	2	30	1.16
46072700--46072731	2	16.0	2	100	0	64	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46074465--46074498	13	2.5	14	90	4	52	67	2	0	29	1.05
46074493--46074550	30	1.9	31	86	10	84	31	20	3	44	1.68
46074490--46074569	29	2.7	30	81	11	85	36	20	2	41	1.66
46094970--46095026	18	3.2	18	92	0	96	26	24	17	31	1.97
46098107--46098134	8	3.5	8	100	0	56	46	0	28	25	1.53
46099513--46099947	144	3.0	144	78	7	522	33	16	20	29	1.95
46100866--46101088	111	2.0	111	94	0	392	30	12	11	45	1.78
46110681--46110755	37	2.0	37	100	0	150	34	13	28	24	1.93
46121711--46121759	14	3.3	14	76	15	53	63	2	0	34	1.06
46121711--46121764	16	3.4	17	72	15	51	62	1	0	35	1.06

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205