genome.fa.s19.2.7.7.80.10.50.1000.151.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  61124829

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   

This is table  151  of  205  ( 24568 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45621666--45621787	36	3.3	37	85	5	140	54	12	27	5	1.60
45622051--45622105	24	2.2	26	81	12	71	45	0	1	52	1.11
45622318--45622352	16	2.2	16	89	0	52	34	37	0	28	1.58
45623666--45623752	38	2.3	38	83	0	102	32	16	18	33	1.93
45626026--45626084	30	1.9	31	89	3	93	59	11	8	20	1.58
45634864--45634942	27	2.9	27	83	7	81	22	20	20	36	1.95
45634897--45634956	27	2.2	27	93	0	102	16	20	23	40	1.91
45634999--45635149	27	5.3	27	74	18	128	19	16	20	43	1.88
45634863--45635042	99	1.8	100	90	1	290	24	19	18	37	1.94
45643341--45643485	53	2.7	52	80	4	173	37	13	20	28	1.90
45643616--45643819	28	7.3	27	68	18	96	30	13	25	29	1.94
45643716--45643820	27	3.8	28	71	7	79	27	19	26	26	1.99
45643613--45643819	56	3.7	55	79	8	204	30	14	25	29	1.94
45643775--45643851	28	2.7	27	80	11	82	27	16	31	24	1.97
45652499--45652542	23	1.9	22	82	17	54	36	25	0	38	1.56
45652587--45652680	45	2.1	45	93	0	161	30	24	19	25	1.98
45652686--45652871	51	3.7	50	76	4	176	30	25	17	26	1.97
45661847--45661887	21	2.0	21	95	0	73	31	21	26	19	1.97
45670043--45670083	19	2.2	18	86	4	55	36	2	0	60	1.10
45670053--45670144	46	2.0	46	83	8	118	39	4	1	55	1.27
45670369--45670395	5	5.4	5	100	0	54	81	0	0	18	0.69
45670522--45670629	11	10.5	11	69	15	54	37	2	0	59	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45670554--45670593	21	2.0	20	85	5	53	45	5	0	50	1.23
45670526--45670678	10	15.5	10	66	17	63	35	3	1	58	1.25
45670572--45670607	17	2.1	18	89	5	56	36	0	0	63	0.94
45670609--45670647	18	2.2	18	86	9	53	35	0	7	56	1.28
45670735--45670784	10	5.1	10	75	22	52	42	0	0	58	0.98
45670788--45670866	30	2.6	30	81	0	95	49	18	3	27	1.65
45673299--45673325	3	9.0	3	100	0	54	33	33	0	33	1.58
45675769--45675826	19	2.9	20	68	25	50	18	10	6	63	1.47
45676093--45676136	24	1.9	24	90	9	74	36	0	2	61	1.09
45698609--45698672	9	7.5	8	77	16	58	21	1	6	70	1.18
45703711--45703760	3	17.0	3	78	12	50	36	4	0	60	1.16
45703711--45703760	16	3.0	17	74	14	59	36	4	0	60	1.16
45703711--45703760	19	2.6	19	75	9	57	36	4	0	60	1.16
45703820--45703879	31	1.9	31	96	0	111	40	8	8	43	1.65
45706794--45706906	45	2.5	45	79	1	120	28	20	19	31	1.97
45706924--45707036	44	2.6	43	81	8	129	30	21	20	27	1.98
45707332--45707779	134	3.4	130	84	5	593	31	24	14	28	1.95
45707043--45707784	44	17.0	44	76	6	558	30	24	14	30	1.95
45712284--45712377	48	2.0	48	93	0	161	13	29	11	44	1.80
45717015--45717060	18	2.6	18	82	0	56	6	21	4	67	1.32
45717092--45717133	22	2.0	21	85	4	57	7	23	2	66	1.28
45721799--45721872	30	2.5	30	91	4	123	51	1	5	41	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45721799--45721888	30	3.0	30	85	6	85	54	1	6	37	1.34
45723099--45723129	15	2.1	15	93	0	53	19	19	29	32	1.96
45725486--45725534	25	2.0	25	83	0	62	32	6	6	55	1.49
45728061--45728106	21	2.1	22	96	4	85	19	28	4	47	1.68
45730345--45730380	18	2.0	18	88	0	54	30	0	8	61	1.26
45730396--45730472	20	3.8	20	73	13	86	58	1	3	36	1.25
45730543--45730619	14	5.0	15	74	20	70	42	16	7	32	1.77
45730559--45730598	20	2.0	20	90	0	62	50	12	10	27	1.72
45730547--45730613	34	1.9	35	90	3	109	46	14	7	31	1.73
45744274--45744346	37	2.0	37	97	0	137	9	23	15	52	1.72
45761107--45761138	7	4.6	7	100	0	64	53	0	0	46	1.00
45762204--45762301	31	3.3	30	76	11	94	62	15	3	19	1.45
45765546--45765588	19	2.3	19	88	8	61	44	0	6	48	1.29
45765490--45765645	50	3.1	50	60	26	112	44	7	15	32	1.75
45765646--45765688	19	2.3	19	88	8	61	44	0	6	48	1.29
45765540--45765695	47	3.1	50	60	26	112	45	3	12	37	1.61
45765473--45765727	44	5.1	50	60	24	124	43	6	13	36	1.70
45765490--45765744	50	5.1	50	59	27	110	43	7	14	34	1.73
45765472--45765755	100	2.8	100	98	0	550	43	6	14	35	1.71
45768156--45768187	16	2.1	15	94	5	55	65	0	0	34	0.93
45768156--45768201	23	2.1	23	84	8	60	63	0	0	36	0.95
45785236--45785260	11	2.3	11	100	0	50	60	0	0	40	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45791250--45791297	4	11.8	4	82	12	62	29	2	22	45	1.64
45791988--45792012	12	2.1	12	100	0	50	32	0	24	44	1.54
45793305--45793598	132	2.2	132	99	0	579	27	14	18	39	1.90
45801577--45801640	32	2.0	32	84	0	83	46	4	6	42	1.49
45802915--45803054	30	4.9	27	74	16	88	57	4	1	37	1.27
45802914--45803062	29	5.2	28	72	17	103	57	4	1	36	1.26
45802941--45802983	19	2.2	20	84	15	56	58	0	2	39	1.11
45802932--45803063	50	2.7	47	78	12	133	57	3	1	37	1.26
45803710--45803866	19	7.9	19	73	15	88	35	0	5	58	1.22
45803712--45803882	10	17.1	9	71	15	83	35	0	5	59	1.22
45803790--45803831	21	2.0	22	86	9	61	35	0	4	59	1.19
45803841--45803902	28	2.1	30	85	5	83	35	0	4	59	1.19
45803712--45803882	20	8.5	20	72	16	92	35	0	5	59	1.22
45803927--45803986	31	1.9	31	83	6	77	21	8	3	66	1.33
45804110--45804146	13	3.0	12	88	7	56	70	2	0	27	1.01
45804111--45804146	19	1.9	18	88	5	54	72	2	0	25	0.98
45807531--45807555	11	2.3	11	100	0	50	52	0	12	36	1.39
45808468--45808506	19	2.1	19	85	9	53	38	0	2	58	1.12
45814213--45814322	40	2.7	40	83	6	134	28	30	24	17	1.97
45815105--45815197	36	2.5	35	80	13	98	44	1	23	31	1.61
45816778--45816811	14	2.4	14	95	0	59	50	11	20	17	1.77
45818641--45818805	64	2.6	63	84	0	213	30	25	19	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45818878--45818983	42	2.5	42	86	3	133	38	16	15	30	1.89
45821488--45821524	17	2.2	17	90	4	58	64	27	0	8	1.21
45825568--45825619	26	2.0	26	96	3	97	38	17	19	25	1.93
45826840--45826885	23	2.0	23	100	0	92	21	34	26	17	1.95
45831226--45831301	38	2.0	38	92	0	125	25	26	17	31	1.97
45831835--45831869	17	2.1	17	94	0	61	51	8	22	17	1.72
45831906--45832080	89	2.0	89	93	0	296	12	19	32	36	1.88
45840994--45841061	12	5.6	11	80	15	64	85	7	4	2	0.82
45840997--45841047	10	4.9	10	77	15	50	86	7	1	3	0.77
45840994--45841063	24	3.0	23	81	10	79	84	7	4	4	0.87
45840995--45841062	13	4.8	13	82	12	55	85	7	4	2	0.82
45841920--45843258	74	17.9	74	86	7	1759	27	15	19	36	1.93
45841920--45843258	151	8.9	147	87	7	1751	27	15	19	36	1.93
45843456--45843569	29	3.9	29	82	2	156	34	20	6	39	1.77
45843455--45843578	59	2.1	59	89	3	187	35	20	5	38	1.76
45843455--45843600	59	2.5	60	84	6	174	34	21	5	39	1.76
45843810--45843866	20	2.8	21	78	5	62	64	0	33	1	1.04
45843923--45843952	13	2.3	13	100	0	60	0	40	60	0	0.97
45844293--45844332	15	2.5	17	84	15	59	75	0	25	0	0.81
45844695--45844737	22	2.0	20	86	13	59	37	11	9	41	1.74
45844695--45844737	21	2.0	21	86	8	61	37	11	9	41	1.74
45846880--45846906	7	3.9	7	100	0	54	0	0	14	85	0.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45847498--45847604	40	2.7	40	80	1	142	20	17	29	31	1.96
45847988--45848078	21	4.3	22	75	10	75	26	1	37	35	1.64
45848292--45848332	21	2.0	20	85	4	55	17	2	41	39	1.62
45848321--45848368	22	2.2	22	96	0	87	20	2	43	33	1.64
45854650--45854738	42	2.1	43	85	2	117	20	14	31	33	1.93
45856663--45856707	21	2.2	20	84	11	56	53	2	0	44	1.13
45863422--45863446	13	1.9	13	100	0	50	32	0	24	44	1.54
45863440--45863471	13	2.5	13	94	0	55	50	3	28	18	1.62
45874144--45874326	63	2.9	63	80	0	213	46	11	8	33	1.71
45882828--45882891	3	21.0	3	75	3	56	59	3	6	31	1.38

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205