genome.fa.s19.2.7.7.80.10.50.1000.158.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  61124829

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   

This is table  158  of  205  ( 24568 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47220315--47220376	31	2.0	31	96	0	115	41	17	8	32	1.79
47231383--47231650	41	6.6	41	88	2	378	22	27	20	29	1.99
47234498--47234540	21	2.0	21	95	0	77	34	11	13	39	1.82
47238891--47238954	27	2.4	27	86	5	85	32	18	18	29	1.95
47248528--47248799	41	6.6	41	88	3	395	30	18	26	25	1.98
47248528--47248799	123	2.2	123	91	0	436	30	18	26	25	1.98
47260756--47260841	43	2.0	43	97	0	163	27	17	11	43	1.84
47269362--47269407	24	2.0	23	83	12	58	60	2	6	30	1.34
47281568--47281600	18	1.9	18	88	11	52	33	0	12	54	1.37
47291067--47291113	23	2.0	24	87	4	69	27	10	12	48	1.74
47291103--47291149	24	1.9	24	86	4	67	25	2	8	63	1.34
47302809--47302916	44	2.5	44	84	3	139	32	27	14	25	1.95
47302860--47302972	42	2.7	42	78	6	104	30	21	17	30	1.96
47303270--47303407	66	2.1	65	83	5	170	14	24	19	41	1.89
47306864--47306901	18	2.0	20	90	10	62	76	5	0	18	0.97
47308327--47308399	23	3.3	23	68	14	71	27	12	4	56	1.54
47312030--47312074	22	2.0	23	82	4	56	60	2	0	37	1.09
47313456--47313486	16	1.9	16	93	0	53	51	12	3	32	1.56
47315531--47315573	23	1.9	22	85	4	59	76	0	4	18	0.95
47327025--47327065	21	2.0	21	81	18	50	31	19	26	21	1.97
47329556--47329598	16	2.4	19	88	11	65	67	2	4	25	1.22
47336154--47336265	55	2.0	55	92	0	188	36	1	14	47	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47336564--47336605	22	2.0	20	86	9	57	42	4	21	30	1.73
47339118--47339158	21	2.0	21	85	9	57	39	0	17	43	1.49
47339422--47339463	21	2.0	21	100	0	84	47	0	19	33	1.49
47342117--47342162	23	2.0	22	84	16	58	65	15	0	19	1.28
47342336--47342374	18	2.0	20	85	9	55	23	10	5	61	1.48
47343130--47343161	12	2.6	13	90	9	50	6	46	28	18	1.73
47349363--47349402	22	1.9	21	85	10	55	37	0	0	62	0.95
47352500--47352582	41	2.0	42	97	2	159	75	12	12	0	1.04
47352547--47352589	6	7.3	6	87	7	54	86	0	13	0	0.58
47364964--47365074	34	3.5	32	78	11	122	45	0	10	44	1.39
47365158--47365931	126	6.2	126	88	1	971	37	15	17	29	1.91
47365158--47365928	251	3.1	249	86	2	997	38	15	17	29	1.90
47365158--47365931	377	2.1	377	85	1	1034	37	15	17	29	1.91
47367420--47367581	41	4.0	41	94	0	279	19	24	29	27	1.99
47367952--47367988	14	2.6	14	91	0	65	24	0	29	45	1.53
47368037--47368069	14	2.3	15	94	5	59	30	0	33	36	1.58
47368288--47368332	7	6.4	7	86	0	54	22	0	44	33	1.53
47368288--47368350	21	3.0	21	77	11	65	23	0	42	33	1.55
47369541--47369597	30	1.9	30	85	0	78	45	17	24	12	1.83
47373997--47374108	43	2.6	43	89	0	170	21	19	29	29	1.98
47373997--47374134	43	3.2	42	76	5	132	23	19	25	31	1.98
47376589--47376713	43	2.9	43	77	12	148	23	18	27	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47376919--47376992	36	2.1	36	84	0	94	33	5	16	44	1.70
47379025--47379063	18	2.2	17	86	13	53	33	0	20	46	1.51
47389248--47389282	18	1.9	18	94	0	61	40	5	28	25	1.78
47390070--47390133	32	2.0	32	100	0	128	46	3	3	46	1.34
47390074--47390129	19	3.3	19	62	27	52	42	3	3	50	1.37
47394646--47394682	14	2.6	15	83	12	51	43	8	0	48	1.32
47394758--47394804	16	3.0	16	78	12	53	46	0	2	51	1.13
47394653--47394921	120	2.2	120	96	2	488	42	2	5	49	1.39
47394697--47394884	61	3.1	61	69	17	201	42	1	7	48	1.41
47394878--47394919	15	2.7	16	82	14	52	45	0	2	52	1.13
47394869--47394910	15	2.9	15	82	10	52	47	0	0	52	1.00
47403411--47403452	19	2.3	19	84	12	52	57	4	21	16	1.58
47406907--47407338	104	4.2	104	97	0	785	31	30	19	18	1.96
47407667--47407730	30	2.2	29	81	10	76	29	28	6	35	1.82
47407674--47407730	30	1.9	30	85	3	80	29	24	7	38	1.82
47413033--47413066	17	2.0	17	88	0	50	67	8	5	17	1.37
47413829--47413951	39	3.1	40	87	3	169	24	25	14	35	1.93
47416036--47416078	21	2.1	21	86	4	61	48	9	2	39	1.48
47420315--47420355	18	2.2	19	86	4	57	46	0	0	53	1.00
47420794--47420846	23	2.4	21	84	12	70	43	1	0	54	1.11
47420794--47420845	22	2.3	23	87	9	72	44	1	0	53	1.11
47426665--47426735	32	2.2	32	82	9	83	40	4	0	54	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47427009--47427055	21	2.3	20	82	7	51	31	6	10	51	1.62
47436227--47436316	21	4.2	21	90	2	135	20	2	33	44	1.63
47436227--47436316	43	2.1	42	93	2	153	20	2	33	44	1.63
47436377--47436426	21	2.4	21	89	0	82	26	0	30	44	1.55
47436266--47436466	110	1.8	111	91	5	336	28	1	23	45	1.64
47436939--47436981	18	2.4	19	84	7	54	39	9	30	20	1.84
47437629--47437675	7	6.7	7	100	0	94	57	14	0	27	1.38
47438821--47438884	11	5.7	11	80	9	67	48	1	28	21	1.59
47439127--47439155	13	2.2	13	100	0	58	10	24	31	34	1.89
47440073--47440126	28	2.0	28	89	10	87	55	5	11	27	1.57
47441772--47441832	28	2.2	28	93	0	104	32	14	16	36	1.89
47442965--47443004	6	6.7	6	94	0	71	47	17	2	32	1.61
47444635--47444674	21	1.9	21	94	0	71	27	20	30	22	1.98
47445140--47445206	6	11.2	6	83	0	80	19	7	14	58	1.60
47445223--47445281	6	9.8	6	81	7	66	27	5	15	52	1.63
47445223--47445279	30	1.9	30	92	7	98	28	5	15	50	1.65
47449312--47449349	18	2.1	18	95	0	67	0	34	0	65	0.93
47449319--47449354	18	2.0	18	94	0	63	0	36	0	63	0.94
47453730--47453778	24	2.0	24	96	0	89	34	12	4	48	1.59
47462066--47462218	21	7.4	21	71	14	104	17	6	11	64	1.47
47462055--47462218	43	4.0	42	80	11	176	18	7	10	63	1.49
47462064--47462218	80	1.9	83	85	5	217	18	7	11	63	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47462208--47462249	19	2.3	18	84	8	57	16	2	9	71	1.23
47462064--47462249	80	2.3	80	82	8	207	18	6	10	64	1.46
47463554--47463627	22	3.5	22	71	23	77	59	16	5	18	1.55
47463583--47463612	11	2.7	11	89	0	51	60	13	10	16	1.59
47463564--47463634	19	3.6	19	74	10	70	56	16	7	19	1.63
47464019--47464064	9	5.1	9	91	0	65	13	39	13	34	1.83
47470750--47470788	16	2.2	19	86	13	57	61	0	5	33	1.18
47472344--47472442	41	2.4	41	86	0	126	24	22	27	26	2.00
47474632--47474683	17	2.7	19	77	17	63	40	19	15	25	1.90
47483374--47483657	59	4.7	58	67	18	150	43	2	4	49	1.36
47483367--47483657	120	2.4	122	89	4	462	43	2	4	49	1.35
47483601--47483637	19	2.0	19	85	15	51	45	0	0	54	1.00
47483802--47483887	44	1.9	45	85	2	120	36	29	6	27	1.83
47483875--47483904	15	2.0	15	100	0	60	33	40	0	26	1.57
47489376--47489412	14	2.5	15	83	16	51	21	5	18	54	1.64
47495938--47496017	38	2.1	38	84	9	101	26	13	21	38	1.90
47496783--47496846	30	2.1	32	85	5	87	59	17	3	20	1.51
47500381--47500407	9	3.0	9	100	0	54	44	22	11	22	1.84
47501930--47501964	18	2.0	18	94	5	63	42	17	17	22	1.88
47505087--47505199	25	4.5	26	74	7	83	29	18	28	23	1.98
47505091--47505228	50	2.8	50	80	4	118	34	17	26	22	1.96
47510148--47510181	15	2.2	15	89	5	50	14	5	8	70	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47513855--47513894	13	2.9	15	78	17	50	22	7	15	55	1.65
47515665--47515690	13	2.0	13	100	0	52	46	0	0	53	1.00
47522756--47522793	19	2.0	19	94	0	67	47	7	21	23	1.77
47523105--47523193	37	2.6	31	76	20	97	39	2	4	53	1.33
47523099--47523196	11	8.9	11	67	18	53	40	2	4	53	1.32
47524116--47524277	80	2.0	80	98	0	315	25	22	8	43	1.81
47526529--47526684	82	1.9	81	83	6	199	27	17	26	28	1.98
47526528--47526705	27	6.6	27	78	7	164	27	16	26	28	1.97
47526525--47526705	82	2.2	81	79	4	195	27	17	26	28	1.97
47529214--47529252	21	2.0	19	85	14	53	20	23	5	51	1.67

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205