genome.fa.s19.2.7.7.80.10.50.1000.168.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  61124829

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   

This is table  168  of  205  ( 24568 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50109046--50109175	33	3.6	33	80	15	143	33	9	23	33	1.87
50109044--50109175	39	3.6	37	88	7	191	34	9	23	33	1.86
50112434--50112478	20	2.1	22	84	12	58	13	11	8	66	1.44
50116881--50116920	21	1.9	21	100	0	80	55	15	0	30	1.41
50119602--50119637	17	2.1	18	89	5	56	38	22	27	11	1.88
50126067--50126128	29	2.1	30	90	6	99	50	3	8	38	1.48
50126311--50126415	43	2.4	42	75	9	95	32	20	19	27	1.97
50129375--50129542	82	2.0	82	79	6	180	34	24	21	19	1.96
50129426--50129544	41	2.9	41	87	2	159	36	24	19	20	1.95
50133774--50133815	10	4.2	10	81	0	57	33	0	16	50	1.46
50134844--50135062	40	5.3	41	73	9	142	25	23	18	32	1.97
50135128--50135211	40	2.1	41	82	6	100	30	21	17	29	1.96
50140239--50140281	21	2.0	21	90	0	68	37	11	13	37	1.82
50140938--50141228	107	2.7	107	91	0	465	25	7	23	44	1.78
50141121--50141158	11	3.4	11	82	17	51	10	10	15	63	1.52
50141121--50141202	23	3.6	23	79	14	80	15	7	20	56	1.64
50142321--50142444	37	3.4	37	95	0	221	41	16	7	35	1.76
50142659--50142724	33	2.0	33	96	0	123	43	13	6	36	1.69
50144308--50144334	11	2.5	11	100	0	54	22	7	18	51	1.70
50145733--50145940	91	2.3	91	92	0	335	45	3	4	46	1.39
50145855--50145915	28	2.2	28	85	5	81	45	0	3	50	1.17
50145773--50145915	44	3.2	43	69	20	121	46	2	3	48	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50146090--50146131	15	2.7	16	82	14	52	45	0	2	52	1.13
50146081--50146122	15	2.9	15	82	10	52	47	0	0	52	1.00
50146276--50146366	45	2.0	45	87	6	132	35	29	5	29	1.80
50150800--50150861	28	2.2	28	81	18	76	48	32	0	19	1.49
50151030--50151107	40	2.0	40	87	5	113	23	23	21	32	1.98
50151042--50151138	40	2.4	40	79	3	106	28	23	17	29	1.97
50151182--50151289	40	2.7	40	83	0	144	25	24	20	30	1.98
50151335--50151464	40	3.2	40	79	7	120	24	23	20	31	1.98
50150978--50151411	151	2.8	153	84	6	585	28	24	15	31	1.96
50151353--50151480	41	3.1	41	82	5	127	24	26	19	29	1.98
50155109--50155170	25	2.5	24	75	15	63	29	3	0	67	1.06
50157727--50157769	3	14.3	3	90	0	68	65	2	2	30	1.18
50159511--50159976	90	5.4	84	80	8	336	26	21	20	31	1.98
50159596--50159976	90	4.3	90	81	7	480	26	20	19	32	1.97
50168976--50169068	41	2.2	42	96	3	170	20	32	17	30	1.95
50172382--50172428	20	2.3	20	86	13	62	59	4	2	34	1.29
50178152--50178311	87	1.8	87	84	5	216	42	15	18	23	1.88
50187469--50187650	45	4.0	45	86	4	242	45	19	13	21	1.84
50187469--50187640	90	1.9	90	90	4	276	44	19	13	22	1.85
50189266--50189309	20	2.2	20	91	0	70	11	31	9	47	1.71
50189687--50189718	16	2.0	16	93	0	55	9	21	43	25	1.82
50197443--50197520	37	2.1	37	100	0	156	34	29	8	26	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50197777--50197864	33	2.6	34	81	5	97	45	1	31	21	1.59
50197820--50197940	54	2.3	54	85	7	158	43	0	32	23	1.59
50198993--50199034	23	1.9	21	85	9	57	30	11	4	52	1.59
50205684--50205743	28	2.1	27	81	6	66	60	5	3	31	1.35
50207213--50207249	16	2.3	16	86	13	58	40	0	0	59	0.97
50207263--50207312	16	3.2	16	70	18	52	52	0	0	48	1.00
50207244--50207309	29	2.2	30	86	10	91	57	0	0	42	0.98
50207253--50207330	29	2.9	26	78	17	79	56	0	1	42	1.07
50207356--50207387	13	2.4	14	85	15	50	43	0	0	56	0.99
50209125--50209179	29	2.0	27	86	13	76	27	3	0	69	1.05
50217672--50217724	28	1.9	27	88	3	79	54	9	9	26	1.63
50221342--50221402	31	2.0	31	96	0	113	14	24	27	32	1.95
50246365--50246403	16	2.5	15	84	15	53	17	33	0	48	1.48
50250982--50251017	3	12.0	3	87	0	54	61	2	36	0	1.11
50252581--50252622	17	2.5	17	88	7	59	0	38	2	59	1.10
50252576--50252622	14	3.4	14	81	0	58	0	36	2	61	1.08
50252576--50252628	20	2.7	20	82	8	65	0	33	1	64	1.05
50253132--50253245	60	1.9	60	85	7	160	40	8	9	41	1.69
50253210--50253263	20	2.7	20	77	11	56	35	11	9	44	1.72
50253303--50253397	40	2.4	41	82	12	117	38	14	8	37	1.77
50253303--50253401	20	4.9	20	76	11	105	38	14	10	37	1.79
50253404--50253450	20	2.3	20	88	0	67	29	8	19	42	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50253513--50253759	20	12.6	20	71	9	159	36	8	13	40	1.76
50255719--50255758	18	2.2	18	86	8	55	20	2	2	75	1.04
50255980--50256026	20	2.3	20	89	7	69	34	2	2	61	1.20
50255963--50256024	21	3.0	21	81	11	65	30	4	1	62	1.25
50260584--50260659	38	2.0	38	97	0	143	39	17	15	27	1.90
50261163--50261215	17	3.3	17	65	24	51	41	18	15	24	1.89
50261155--50261215	31	2.0	31	100	0	122	42	16	16	24	1.88
50265206--50265260	23	2.4	23	85	11	69	12	40	23	23	1.89
50265315--50265344	14	2.2	13	94	5	51	6	6	3	83	0.90
50266320--50266389	12	5.8	12	74	5	52	34	2	5	57	1.37
50266646--50266679	12	2.8	12	86	0	50	38	2	0	58	1.13
50270245--50270314	28	2.5	28	83	2	79	32	11	7	48	1.66
50270328--50270384	5	11.4	5	100	0	114	59	0	0	40	0.97
50270689--50270769	36	2.2	36	84	4	101	29	9	19	40	1.84
50270707--50270777	18	3.9	18	73	0	61	30	12	18	38	1.88
50271307--50271352	23	2.0	23	100	0	92	26	13	30	30	1.93
50271423--50271496	17	4.4	17	74	6	60	28	12	17	41	1.85
50271425--50271531	50	2.1	51	84	5	137	28	11	17	42	1.84
50274171--50274451	123	2.3	125	91	2	451	30	14	20	34	1.93
50275654--50275685	15	2.1	15	100	0	64	28	28	18	25	1.98
50277539--50277645	23	4.2	23	72	21	88	32	0	20	46	1.51
50277538--50277785	29	8.8	29	87	9	354	29	0	24	45	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50278993--50279024	7	4.6	7	96	0	55	62	12	0	25	1.30
50279959--50280014	25	2.2	25	81	15	62	60	7	0	32	1.24
50280105--50280171	32	2.1	32	91	2	109	65	0	1	32	1.02
50280205--50280254	22	2.3	22	93	6	84	36	0	34	30	1.58
50289230--50289267	20	1.9	20	94	0	67	39	0	26	34	1.57
50294968--50295007	21	1.9	21	89	0	62	30	0	15	55	1.41
50297492--50297518	4	6.8	4	100	0	54	48	0	0	51	1.00
50298414--50298539	61	2.1	61	86	3	173	26	25	26	21	1.99
50300169--50300510	170	2.0	170	98	0	657	25	18	28	26	1.98
50307800--50307949	77	1.9	77	90	2	239	57	4	14	24	1.56
50310582--50311204	43	14.4	43	65	7	206	26	26	20	27	1.99
50310572--50311322	130	5.8	130	96	0	1342	26	24	20	28	1.99
50310582--50311220	86	7.4	86	66	7	315	26	25	20	27	1.99
50311232--50311389	45	3.4	44	67	17	113	28	22	18	29	1.98
50311230--50311417	95	2.0	95	95	0	340	28	22	19	29	1.98
50311325--50312002	134	5.1	134	96	0	1223	29	23	20	26	1.99
50311430--50311894	46	10.4	46	65	11	248	30	23	20	26	1.98
50311125--50311557	229	1.9	226	88	2	661	28	23	20	27	1.99
50311950--50312299	86	4.1	86	93	0	547	26	24	23	26	2.00
50312025--50312245	42	5.2	42	60	20	98	23	23	25	26	2.00
50316433--50316476	19	2.3	20	84	7	56	40	11	20	27	1.86
50318929--50318960	8	4.0	8	95	0	55	84	0	0	15	0.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50323072--50323103	8	4.0	8	95	0	55	84	0	0	15	0.63
50323588--50323790	102	2.0	101	96	0	370	40	17	18	23	1.90
50325261--50325305	17	2.6	17	82	0	54	46	13	11	28	1.77
50326140--50326316	24	7.6	23	83	8	196	22	14	30	32	1.94
50344989--50345013	13	1.9	13	100	0	50	52	8	16	24	1.70
50345737--50345785	20	2.3	21	79	13	55	67	6	2	24	1.24
50346680--50346723	22	2.0	22	95	0	79	68	2	9	20	1.28
50346685--50346722	11	3.5	11	79	13	51	71	2	7	18	1.23
50346681--50346723	7	6.0	7	81	5	50	69	2	9	18	1.26
50348668--50348706	20	1.9	21	94	5	71	5	17	15	61	1.51

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205