genome.fa.s19.2.7.7.80.10.50.1000.185.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  61124829

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   

This is table  185  of  205  ( 24568 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54860895--54860969	21	3.6	21	76	5	71	24	0	44	32	1.54
54860996--54861155	81	2.0	80	91	1	257	33	1	19	46	1.58
54865868--54865994	43	2.9	43	86	1	182	32	16	22	28	1.96
54866032--54866094	33	2.0	32	84	6	83	23	22	23	30	1.99
54866858--54867010	43	3.5	42	83	5	164	29	16	24	29	1.96
54866884--54867010	43	2.9	43	86	1	182	32	16	22	28	1.96
54867048--54867110	33	2.0	32	84	6	83	23	22	23	30	1.99
54877138--54877168	15	2.1	15	93	0	53	51	3	0	45	1.17
54878552--54879107	276	2.0	276	95	0	995	27	14	18	39	1.90
54889898--54890032	49	2.8	49	96	0	243	14	8	17	59	1.60
54896179--54896209	15	2.1	15	93	0	53	38	29	22	9	1.86
54901445--54901485	21	2.0	21	85	0	55	58	29	0	12	1.34
54905057--54905111	20	2.7	21	81	13	62	23	0	7	69	1.14
54905059--54905112	26	2.1	25	86	3	72	25	0	7	66	1.17
54905078--54905126	24	2.0	26	84	8	66	24	0	10	65	1.23
54905657--54905776	62	2.0	61	86	1	168	39	7	6	46	1.58
54906231--54906265	17	2.1	17	94	0	61	68	0	0	31	0.90
54910001--54910055	11	4.5	12	72	19	51	18	0	3	78	0.90
54910108--54910177	23	3.0	24	75	8	72	17	7	1	74	1.11
54913537--54913578	21	2.0	21	95	0	75	33	16	19	30	1.94
54918985--54919028	22	2.0	22	95	0	79	25	36	4	34	1.76
54919327--54919365	13	2.8	13	88	7	51	69	2	10	17	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54921580--54921637	15	3.5	17	77	15	59	77	1	12	8	1.06
54924895--54924938	22	2.0	22	95	0	79	25	36	4	34	1.76
54925415--54925499	39	2.2	39	83	10	111	57	2	3	36	1.29
54925445--54925501	20	2.9	20	75	12	64	56	1	5	36	1.32
54927873--54927909	9	4.1	9	92	0	65	45	13	10	29	1.77
54932378--54932421	21	2.1	21	86	0	61	43	25	0	31	1.55
54938504--54938537	16	2.1	16	88	0	50	50	14	17	17	1.79
54941338--54941381	21	2.1	21	91	0	70	29	20	29	20	1.98
54949499--54949547	16	3.1	16	80	11	57	46	0	2	51	1.12
54949754--54949806	16	3.3	15	87	10	70	26	33	1	37	1.68
54949762--54949818	16	3.6	16	86	9	80	22	36	3	36	1.72
54950512--54950555	18	2.5	18	88	3	63	47	0	2	50	1.13
54959254--54959309	15	3.7	15	70	15	53	35	0	32	32	1.58
54961534--54961582	25	2.0	25	88	4	73	38	10	2	48	1.48
54967185--54967216	15	2.1	15	100	0	64	46	12	15	25	1.81
54968829--54968890	29	2.1	30	84	6	81	45	0	14	40	1.45
54969504--54969533	7	4.3	7	100	0	60	43	0	0	56	0.99
54970030--54970054	7	3.6	7	100	0	50	28	0	0	72	0.86
54970027--54970061	14	2.5	15	86	13	56	28	0	0	71	0.86
54977194--54977237	22	2.0	22	82	8	54	61	4	11	22	1.48
54983476--54983517	20	2.0	21	86	9	59	30	21	2	45	1.65
54986973--54987007	17	2.1	17	89	5	54	48	5	14	31	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54987657--54987855	41	4.9	40	82	10	217	21	18	27	33	1.96
54987653--54987855	82	2.5	81	86	4	264	21	18	27	33	1.96
54990167--54990310	42	3.4	40	81	10	164	31	25	13	29	1.94
54996159--54996227	33	2.2	31	87	10	95	24	24	20	30	1.99
54998096--54998128	13	2.6	13	90	4	50	39	3	0	57	1.14
54998206--54998247	21	2.0	20	90	4	66	71	0	26	2	0.98
54999124--54999264	40	3.6	40	68	13	112	26	17	23	32	1.97
55002288--55002333	19	2.4	19	88	0	74	39	0	6	54	1.26
55005367--55005411	23	2.0	22	83	12	56	62	8	2	26	1.37
55005761--55005826	25	2.4	28	80	17	93	60	1	3	34	1.21
55009640--55009675	18	1.9	19	94	5	65	66	0	0	33	0.92
55010125--55010252	58	2.2	58	84	5	159	51	3	1	43	1.26
55010138--55010271	57	2.3	55	79	11	142	52	3	1	41	1.28
55010138--55010267	58	2.3	56	77	13	140	53	3	1	41	1.28
55015360--55015417	3	19.3	3	85	0	71	32	3	5	58	1.37
55018966--55019201	41	5.7	40	77	11	181	30	25	17	27	1.97
55019177--55019227	26	2.0	26	100	0	102	23	31	25	19	1.98
55019136--55019268	67	2.0	67	93	0	230	24	26	21	28	1.99
55020641--55020734	49	1.9	49	93	0	161	43	7	24	24	1.80
55021125--55021244	9	13.4	9	87	1	161	33	25	10	31	1.89
55021125--55021244	27	4.5	27	87	2	179	33	25	10	31	1.89
55021244--55021388	37	3.9	37	95	1	247	47	13	4	34	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55021287--55021383	17	5.4	17	65	14	52	49	13	4	32	1.61
55021244--55021388	73	2.0	74	94	1	256	47	13	4	34	1.63
55021911--55021937	7	3.9	7	100	0	54	55	14	14	14	1.70
55023998--55024030	7	4.7	7	100	0	66	42	0	12	45	1.41
55029459--55029489	16	1.9	16	93	0	53	41	0	0	58	0.98
55039201--55039869	44	15.0	44	76	8	575	30	17	21	29	1.97
55039227--55039887	225	3.0	222	81	6	732	30	18	21	29	1.97
55041322--55041356	15	2.3	15	100	0	70	25	5	5	62	1.40
55053519--55053552	16	2.1	17	88	5	52	82	2	11	2	0.89
55068608--55068661	28	1.9	28	84	0	72	61	7	7	24	1.49
55068718--55068823	56	1.9	55	82	1	131	56	14	5	23	1.59
55069205--55069274	29	2.3	29	90	4	104	34	10	14	41	1.79
55069205--55069284	31	2.6	30	88	5	108	32	8	13	45	1.75
55069205--55069293	29	3.0	29	85	8	90	32	10	13	43	1.77
55082456--55082579	43	2.9	43	82	5	128	31	24	15	29	1.95
55083510--55083837	163	2.0	163	93	1	559	34	21	10	33	1.88
55088368--55088491	43	2.9	43	83	3	135	31	25	15	28	1.95
55091564--55091633	27	2.6	27	83	0	86	32	17	17	32	1.93
55094692--55094757	28	2.4	28	97	0	123	40	10	0	48	1.38
55095063--55095115	18	3.1	18	81	10	67	41	13	0	45	1.43
55095069--55095118	15	3.1	15	85	8	64	44	14	0	42	1.44
55095126--55095197	23	3.2	23	65	31	64	43	0	15	41	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55095124--55095212	45	2.0	45	100	0	178	43	0	15	40	1.47
55095820--55095851	16	1.9	17	93	6	57	6	6	18	68	1.32
55095858--55095921	28	2.3	28	97	0	119	53	0	6	40	1.26
55111293--55111332	2	20.0	2	100	0	80	0	50	0	50	1.00
55114156--55114181	3	8.7	3	100	0	52	0	34	34	30	1.58
55121055--55121081	7	3.9	7	100	0	54	55	0	14	29	1.40
55129045--55129084	20	2.0	20	90	9	64	60	12	0	27	1.33
55130294--55130333	18	2.2	18	100	0	80	57	5	15	22	1.57
55137625--55137658	12	2.8	12	90	4	50	58	0	0	41	0.98
55142589--55142631	20	2.2	20	87	4	61	25	6	9	58	1.54
55144435--55144490	27	2.1	27	89	0	85	30	21	14	33	1.93
55144688--55144743	27	2.1	27	93	0	94	30	19	14	35	1.91
55144322--55144830	253	2.0	252	95	0	910	32	18	13	35	1.90
55148385--55148431	23	2.0	24	83	4	60	38	19	21	21	1.94
55148940--55148996	29	2.0	29	82	0	69	21	38	21	19	1.93
55149053--55149203	75	2.0	75	97	2	286	35	23	13	27	1.92
55152956--55152997	18	2.3	18	91	0	66	21	2	2	73	1.06
55152945--55152987	12	3.6	12	81	12	52	23	2	2	72	1.08
55153094--55153132	11	3.5	11	86	6	51	0	20	2	76	0.90
55156624--55156744	29	4.2	29	91	2	190	27	27	23	21	1.99
55167611--55167680	34	2.1	34	100	0	140	20	17	11	51	1.75
55168590--55168627	18	2.1	18	95	0	67	28	13	2	55	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55169174--55169235	30	2.1	30	93	0	106	40	16	12	30	1.86
55179361--55179391	2	15.5	2	100	0	62	0	48	0	51	1.00
55179631--55179676	7	6.4	7	87	12	67	41	0	56	2	1.11
55184375--55184426	24	2.2	24	85	0	68	34	3	9	51	1.53
55189326--55189388	30	2.1	30	90	0	99	23	3	15	57	1.53
55204834--55204870	13	2.9	14	88	11	53	0	27	0	72	0.84
55210319--55210374	4	14.0	4	100	0	112	25	0	25	50	1.50
55212824--55212874	3	17.0	3	100	0	102	33	0	0	66	0.92
55212958--55213014	22	2.6	22	88	2	80	52	5	1	40	1.34
55213797--55213844	25	1.9	25	82	0	60	58	16	20	4	1.55

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205