genome.fa.s19.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  61124829

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   

This is table  2  of  205  ( 24568 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
363753--363781	14	2.0	15	93	6	51	44	0	13	41	1.44
363800--363828	14	2.0	15	93	6	51	44	0	13	41	1.44
363847--363875	14	2.0	15	93	6	51	44	0	13	41	1.44
363894--363922	14	2.0	15	93	6	51	44	0	13	41	1.44
363941--363969	14	2.0	15	93	6	51	44	0	13	41	1.44
363988--364016	14	2.0	15	93	6	51	44	0	13	41	1.44
364035--364063	14	2.0	15	93	6	51	44	0	13	41	1.44
364082--364110	14	2.0	15	93	6	51	44	0	13	41	1.44
364129--364157	14	2.0	15	93	6	51	44	0	13	41	1.44
364176--364204	14	2.0	15	93	6	51	44	0	13	41	1.44
364223--364251	14	2.0	15	93	6	51	44	0	13	41	1.44
364270--364298	14	2.0	15	93	6	51	44	0	13	41	1.44
364317--364345	14	2.0	15	93	6	51	44	0	13	41	1.44
364845--364886	14	3.0	14	76	10	50	69	0	0	30	0.89
386432--386470	21	1.9	20	84	5	51	25	7	7	58	1.52
387992--388022	16	1.9	16	100	0	62	51	29	6	12	1.65
397104--397150	4	11.8	4	100	0	94	51	23	0	25	1.49
398761--398922	80	2.0	80	98	0	315	30	17	14	38	1.89
401960--402121	81	2.0	81	97	0	306	21	17	8	53	1.69
402144--402240	51	1.9	51	82	4	124	28	11	9	50	1.69
405830--405865	8	4.4	8	89	3	54	0	2	8	88	0.59
413331--413452	56	2.2	55	82	7	138	33	13	20	31	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
413505--413531	11	2.5	11	100	0	54	62	0	0	37	0.95
413929--414037	47	2.3	46	84	4	130	20	17	4	57	1.57
413980--414188	84	2.5	84	84	3	249	23	18	3	53	1.61
414949--414982	17	2.0	17	100	0	68	41	17	5	35	1.74
415538--415735	85	2.3	85	88	0	288	28	31	18	21	1.97
415538--415735	43	4.7	43	87	1	265	28	31	18	21	1.97
418162--418186	13	1.9	13	100	0	50	32	4	24	40	1.73
419186--419509	63	5.0	63	68	20	179	39	4	13	42	1.64
419161--419569	201	2.1	196	92	4	671	38	4	15	41	1.68
419905--420078	41	4.2	41	87	1	224	27	16	22	34	1.95
420071--420167	41	2.4	41	89	0	149	30	21	25	21	1.98
423720--423862	36	3.8	37	81	15	147	34	2	15	46	1.60
423740--423862	36	3.4	38	87	8	186	34	1	16	47	1.56
423740--423861	9	13.6	9	64	13	54	34	1	16	47	1.56
425938--425982	23	2.0	23	100	0	90	42	8	22	26	1.83
439686--439748	28	2.3	27	91	5	108	33	19	11	36	1.87
441749--441778	13	2.3	13	94	0	51	53	26	13	6	1.64
442121--442156	19	1.9	18	88	5	54	63	2	13	19	1.41
442455--442496	11	3.8	11	87	0	57	61	11	16	9	1.55
446022--446050	12	2.5	12	94	5	51	37	6	0	55	1.27
451417--451465	22	2.2	21	82	13	55	24	6	8	61	1.47
461399--461430	16	2.1	15	94	5	55	59	3	0	37	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
462190--462242	26	2.0	27	82	10	65	58	1	9	30	1.40
480930--480963	14	2.5	14	95	4	61	14	0	35	50	1.44
481267--481317	15	3.5	15	69	15	52	52	15	9	21	1.71
482367--482416	15	3.3	15	72	10	57	46	8	20	26	1.78
482353--482438	30	2.8	30	96	1	154	40	6	25	26	1.81
487015--487092	15	5.2	15	67	11	61	44	7	21	25	1.79
487011--487092	30	2.7	30	94	0	137	46	7	21	24	1.77
490169--490200	12	2.8	12	86	13	50	56	0	15	28	1.40
493940--493984	23	2.0	22	83	12	56	40	2	4	53	1.33
496019--496094	25	3.0	26	82	7	102	27	17	18	36	1.93
498295--498341	15	2.9	16	84	12	60	40	19	14	25	1.90
504536--504593	24	2.4	24	76	0	62	60	5	1	32	1.29
504531--504606	37	2.1	37	85	11	104	61	5	2	30	1.31
506341--506394	28	1.9	28	85	7	74	5	25	1	66	1.23
516747--517053	106	2.9	106	99	0	596	31	18	19	30	1.96
517515--517620	37	2.8	38	77	16	105	50	0	13	35	1.41
517899--517955	22	2.6	23	78	18	75	64	3	7	24	1.34
518666--518690	13	1.9	13	100	0	50	68	0	8	24	1.16
524402--524435	16	2.1	16	100	0	68	41	0	17	41	1.50
527263--527401	70	2.0	70	95	0	251	39	10	14	35	1.80
528311--529591	45	28.3	45	86	11	1755	29	25	17	28	1.97
534221--534280	30	2.0	31	83	3	77	41	0	38	20	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
534495--534531	9	4.1	9	92	0	65	29	10	13	45	1.77
534655--534685	16	1.9	16	100	0	62	35	12	12	38	1.82
534610--534906	83	3.6	83	99	0	576	23	18	12	45	1.84
534738--534768	16	1.9	16	100	0	62	35	12	12	38	1.82
534821--534851	16	1.9	16	100	0	62	35	12	12	38	1.82
541156--542146	500	2.0	500	95	0	1784	33	22	18	25	1.97
548683--548719	19	2.0	19	89	5	58	48	10	18	21	1.78
548939--549004	30	2.2	30	86	2	87	45	4	3	46	1.38
549554--549604	22	2.3	23	83	9	63	52	1	5	39	1.37
549717--549770	23	2.4	23	79	14	67	46	5	0	48	1.25
549711--549770	22	2.7	23	78	14	72	46	5	0	48	1.24
549812--549862	18	3.0	17	76	18	61	50	0	0	49	1.00
556861--556933	37	2.0	37	94	0	128	26	16	27	30	1.97
562940--563031	46	2.0	46	95	0	166	29	11	32	26	1.92
586722--586755	17	2.0	17	88	11	52	55	8	0	35	1.31
587616--587819	44	4.6	45	82	4	234	30	20	15	33	1.94
587616--587819	89	2.3	89	85	0	264	30	20	15	33	1.94
589986--590265	51	5.4	50	89	6	380	35	15	22	26	1.94
590079--590115	7	5.3	7	93	0	56	37	13	29	18	1.90
589986--590265	109	2.7	102	88	5	391	35	15	22	26	1.94
590908--591005	45	2.2	45	84	0	124	29	18	18	33	1.95
604685--604715	16	1.9	16	100	0	62	19	19	6	54	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
608625--608675	3	17.3	3	79	4	59	33	0	3	62	1.13
608866--608959	38	2.5	37	78	13	95	37	13	1	47	1.50
611174--611224	23	2.3	21	81	15	59	13	15	0	70	1.17
611709--611757	13	3.8	13	86	7	57	2	8	8	81	0.94
611741--611786	5	9.4	5	84	15	53	0	17	0	82	0.67
611699--611783	35	2.4	36	79	14	97	1	11	5	81	0.92
611700--611786	22	4.0	22	78	12	81	1	11	5	81	0.91
616893--616975	41	2.0	41	83	4	105	16	24	33	25	1.96
617499--617785	44	6.6	45	68	13	129	29	18	19	32	1.96
617597--617775	85	2.1	85	83	5	220	30	20	18	30	1.97
617414--617709	130	2.3	129	80	6	341	29	20	18	31	1.97
617874--618549	50	13.5	50	71	0	452	26	23	20	29	1.99
617845--618552	100	7.1	100	92	0	1092	26	22	20	29	1.99
618750--619087	88	3.9	87	86	4	447	28	26	17	27	1.97
618750--619088	176	1.9	172	88	7	506	28	26	17	28	1.97
618779--619087	45	7.0	44	63	7	142	28	26	16	27	1.97
622104--622146	22	1.9	23	86	13	63	60	2	6	30	1.35
622284--622320	11	3.2	12	81	11	51	24	5	2	67	1.25
623969--624053	44	1.9	44	85	4	118	28	23	25	22	1.99
624590--624633	20	2.3	19	84	4	52	29	0	6	63	1.20
635866--635903	19	2.0	19	100	0	76	52	15	5	26	1.64
636708--636787	37	2.1	38	82	11	94	35	8	2	53	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
637785--637838	21	2.5	21	80	11	56	57	3	5	33	1.40
657747--657810	11	6.0	11	70	14	53	59	0	3	37	1.13
657794--657841	18	2.8	17	78	6	51	60	2	0	37	1.09
658432--658462	11	2.8	11	95	0	53	19	29	3	48	1.64
658418--658483	11	5.9	11	75	20	50	22	27	1	48	1.59
658470--658525	29	2.0	28	82	10	69	30	17	1	50	1.57
660629--660676	21	2.3	21	85	7	62	31	37	20	10	1.87
660644--660686	21	2.0	21	90	0	68	27	41	20	9	1.83
660927--661007	27	3.2	26	75	20	82	45	29	1	23	1.61
660936--660986	21	2.4	21	96	0	93	45	33	0	21	1.52

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205