genome.fa.s19.2.7.7.80.10.50.1000.51.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  61124829

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   

This is table  51  of  205  ( 24568 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15278621--15278678	30	1.9	30	92	0	98	13	31	29	25	1.94
15279502--15279526	9	2.8	9	100	0	50	8	0	8	84	0.79
15285838--15285898	30	2.0	30	83	0	77	14	31	32	21	1.93
15287032--15287152	59	2.1	59	87	3	172	56	9	3	31	1.47
15289136--15289167	11	2.9	11	95	0	55	81	0	0	18	0.70
15289637--15289680	24	1.9	24	86	9	65	36	2	2	59	1.23
15301080--15301111	15	2.2	15	94	5	57	21	12	0	65	1.25
15303513--15303556	11	4.2	11	85	11	56	18	4	27	50	1.66
15303518--15303564	20	2.3	20	92	0	76	21	6	29	42	1.77
15303735--15303759	12	2.1	12	100	0	50	28	24	24	24	2.00
15305446--15305505	29	2.1	29	87	6	86	43	16	10	30	1.81
15311378--15311421	15	2.9	16	86	10	65	75	9	0	15	1.05
15311829--15311877	24	2.0	24	84	0	62	22	26	6	44	1.76
15312382--15312427	21	2.2	21	100	0	92	47	0	4	47	1.21
15312474--15312532	17	3.3	18	72	23	52	45	3	5	45	1.42
15319765--15319881	62	1.9	61	86	5	166	50	4	1	43	1.31
15319892--15319966	11	6.7	11	70	22	50	54	2	2	40	1.28
15319892--15319966	37	2.1	36	82	12	91	54	2	2	40	1.28
15329026--15329080	24	2.3	24	84	9	78	43	5	9	41	1.59
15330501--15330592	41	2.2	40	86	5	130	46	10	0	42	1.39
15330523--15330597	24	3.4	24	67	25	74	49	5	0	45	1.25
15330519--15330602	41	2.0	41	97	0	159	47	7	0	45	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15337636--15337672	14	2.6	14	91	4	56	81	2	10	5	0.96
15337636--15337691	15	3.7	15	79	13	53	76	1	12	8	1.08
15338677--15338850	87	2.0	87	98	0	339	40	9	30	20	1.83
15341708--15341761	21	2.6	21	84	0	72	31	7	29	31	1.85
15345602--15345665	25	2.7	23	78	7	65	35	3	4	56	1.36
15347059--15351119	944	4.3	943	94	1	7082	39	14	16	28	1.89
15351743--15351889	16	9.1	16	69	19	99	53	4	8	34	1.49
15351788--15351841	15	3.1	18	76	17	69	62	0	7	29	1.22
15351791--15351855	33	1.9	34	90	3	105	60	1	9	29	1.37
15351728--15351892	82	2.0	82	100	0	330	54	3	8	33	1.48
15352506--15352552	23	2.0	23	84	8	60	65	2	2	29	1.15
15357673--15357781	55	1.9	58	83	9	145	43	6	19	31	1.76
15360248--15360332	40	2.1	40	97	0	161	40	4	8	47	1.54
15361270--15361334	26	2.6	25	85	7	78	32	20	20	27	1.97
15362512--15362578	33	2.0	35	88	5	102	26	20	5	46	1.74
15371387--15371433	25	1.9	24	91	4	76	38	21	25	14	1.92
15371383--15371466	24	3.4	24	78	15	82	36	19	26	17	1.94
15374618--15374704	24	3.7	24	85	1	122	20	29	4	44	1.71
15385914--15386210	50	5.8	50	82	2	272	24	28	19	26	1.99
15391468--15391900	67	6.6	67	79	5	369	36	15	23	23	1.94
15396055--15396099	23	2.0	23	82	8	56	60	0	4	35	1.17
15397408--15397547	28	5.0	28	79	9	124	25	16	2	55	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15397490--15397539	25	1.9	27	92	8	86	22	22	0	56	1.43
15397831--15397907	34	2.3	34	84	8	95	28	11	16	42	1.84
15406483--15406510	7	4.0	7	100	0	56	57	14	14	14	1.66
15411128--15411177	25	2.0	25	100	0	100	36	16	16	32	1.90
15416760--15416807	3	15.3	3	91	8	78	66	2	0	31	1.03
15416995--15417038	19	2.4	18	85	14	63	68	0	2	29	1.02
15418300--15418346	12	3.8	12	81	13	51	6	0	17	76	0.98
15419569--15419607	19	2.0	19	85	5	51	30	0	5	64	1.15
15420609--15420680	10	6.9	10	73	9	63	36	2	2	58	1.27
15420598--15420733	21	6.4	21	72	7	105	38	2	2	57	1.23
15420596--15420708	43	2.6	41	79	9	118	38	3	1	56	1.27
15420684--15420771	10	8.9	10	71	10	56	42	3	1	53	1.25
15420728--15420775	19	2.6	18	81	15	53	39	8	0	52	1.32
15424964--15425050	44	2.0	44	88	0	129	35	20	22	20	1.96
15438168--15438225	30	1.9	30	100	0	116	41	6	6	44	1.58
15440952--15440992	17	2.4	17	95	0	73	56	0	34	9	1.32
15441508--15441576	15	4.3	16	72	18	56	44	1	4	49	1.31
15441624--15441670	22	2.0	22	92	8	76	57	0	0	42	0.98
15441626--15441675	11	4.1	13	80	19	63	58	0	0	42	0.98
15441639--15441675	14	2.9	14	84	15	53	59	0	0	40	0.97
15443110--15443249	67	2.1	69	94	2	248	32	3	3	60	1.31
15443277--15443324	15	3.1	16	76	14	55	54	2	0	43	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15445195--15445351	63	2.5	63	80	2	154	26	19	25	28	1.98
15451342--15451384	21	2.0	22	86	4	61	20	16	16	46	1.84
15453011--15453108	48	2.0	48	98	0	187	25	33	4	36	1.75
15454074--15454178	25	4.2	25	72	10	81	31	22	25	20	1.98
15454052--15454152	25	4.1	24	70	7	69	31	22	24	20	1.98
15458859--15458914	22	2.4	23	82	14	71	32	1	7	58	1.35
15458859--15458908	12	4.5	11	79	18	50	28	2	6	64	1.28
15460090--15460157	9	7.3	9	70	6	55	67	2	4	25	1.23
15460440--15460513	31	2.3	32	84	6	89	32	14	1	51	1.51
15461747--15461802	23	2.5	22	82	2	67	35	10	1	51	1.47
15464636--15464671	17	2.1	17	100	0	72	27	36	0	36	1.57
15470925--15470967	20	2.2	20	100	0	86	20	11	23	44	1.84
15470962--15471006	23	1.9	23	82	13	56	40	6	15	37	1.74
15473607--15473649	21	2.0	21	90	0	68	65	6	0	27	1.18
15476818--15476863	24	1.9	24	81	0	56	50	2	2	45	1.26
15477407--15477446	21	1.9	21	89	0	62	32	10	7	50	1.64
15480005--15480079	31	2.4	31	90	0	123	17	18	12	52	1.75
15480667--15480750	42	2.0	42	85	0	114	23	23	33	19	1.97
15483280--15483328	10	4.9	10	100	0	98	10	30	59	0	1.31
15488945--15488983	11	3.4	11	80	13	51	51	0	2	46	1.14
15488936--15488983	24	2.1	21	88	11	69	54	0	2	43	1.12
15489144--15489187	14	3.1	14	84	15	56	79	6	11	2	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15490149--15490201	26	2.0	25	85	7	70	22	0	33	43	1.54
15493850--15493901	10	5.4	10	76	17	56	26	3	1	67	1.18
15494331--15494380	26	2.0	24	84	7	64	50	6	4	40	1.46
15495299--15495499	99	2.0	100	90	2	316	47	2	3	46	1.33
15499919--15499959	21	2.0	21	90	0	64	19	29	21	29	1.98
15506041--15506092	23	2.2	24	86	6	72	25	0	17	57	1.40
15507925--15508213	50	5.8	50	83	1	303	26	20	29	23	1.99
15518010--15518049	20	2.0	19	85	9	53	35	5	10	50	1.58
15519722--15519776	28	1.9	29	85	10	78	41	21	12	23	1.88
15528562--15528876	157	2.0	157	93	1	535	41	16	9	32	1.80
15529947--15529979	17	1.9	17	88	11	50	39	3	0	57	1.14
15529975--15530035	26	2.4	25	78	8	61	36	9	4	49	1.58
15530112--15530182	16	4.4	16	85	0	79	35	11	1	52	1.46
15530124--15530190	16	4.2	16	84	0	98	28	11	1	58	1.43
15531914--15531969	27	2.1	27	96	0	103	64	1	3	30	1.21
15535838--15535888	26	2.0	24	85	7	66	31	0	1	66	1.03
15544286--15544347	20	3.2	20	81	6	74	50	1	9	38	1.45
15544291--15544351	18	3.3	18	81	4	68	50	1	9	37	1.45
15546173--15546388	107	2.0	107	92	1	362	28	24	18	28	1.98
15546317--15546546	44	5.2	44	71	4	122	26	25	20	27	1.99
15546382--15546587	44	4.7	43	67	16	127	26	26	19	27	1.99
15546280--15546734	132	3.4	132	91	0	732	27	24	18	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15548034--15548077	7	6.3	7	80	19	56	15	18	0	65	1.27
15549027--15549067	20	2.0	20	90	9	66	65	4	14	14	1.42
15551002--15551027	13	2.0	13	100	0	52	46	15	7	30	1.74
15555034--15555631	44	13.4	44	69	8	391	26	24	18	30	1.98
15555049--15555694	91	7.2	90	91	3	812	25	24	18	31	1.98
15555675--15555950	138	2.0	138	95	0	498	27	22	18	31	1.97
15557133--15557238	47	2.2	47	81	6	124	13	26	16	44	1.84
15557152--15557240	47	1.9	46	88	2	133	12	23	19	44	1.84
15557153--15557252	47	2.1	47	81	0	110	12	26	17	45	1.83
15563190--15563250	20	3.2	20	81	9	74	49	1	9	39	1.46

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205