genome.fa.s19.2.7.7.80.10.50.1000.189.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  61124829

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   

This is table  189  of  205  ( 24568 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56133286--56133527	50	4.7	50	77	3	207	23	27	22	26	2.00
56135303--56135565	40	6.6	40	87	3	309	26	28	20	23	1.99
56139220--56139248	15	1.9	15	100	0	58	48	10	6	34	1.64
56139729--56139838	31	3.6	31	72	4	107	45	14	9	30	1.76
56139941--56140221	82	3.4	82	93	1	447	43	15	6	35	1.72
56140185--56140278	31	3.3	28	71	20	72	47	15	5	30	1.68
56142305--56142389	44	1.9	44	95	0	152	30	23	5	40	1.78
56142563--56142709	43	3.5	42	78	4	143	30	23	16	29	1.96
56144950--56145020	30	2.4	30	85	0	88	35	25	11	28	1.90
56145023--56145237	30	7.2	30	80	8	199	24	26	13	35	1.92
56152063--56152101	17	2.3	17	90	0	60	25	17	25	30	1.97
56158746--56158987	101	2.4	100	86	4	315	30	27	17	25	1.97
56158746--56159021	101	2.7	99	80	5	295	30	28	15	25	1.96
56159213--56159276	16	4.0	16	97	0	119	43	7	6	42	1.58
56161434--56161470	11	3.4	11	100	0	74	54	21	8	16	1.68
56161900--56161986	37	2.4	37	86	3	113	35	25	16	22	1.94
56165164--56165201	16	2.2	18	86	9	53	68	5	0	26	1.11
56169485--56169580	29	3.2	29	76	10	104	26	7	17	48	1.73
56170082--56170117	17	2.1	18	90	10	58	47	13	5	33	1.67
56176838--56176867	9	3.4	9	95	4	53	30	0	0	70	0.88
56177997--56178036	19	2.2	18	86	4	53	15	5	17	62	1.49
56182597--56182865	44	5.8	44	67	10	135	27	20	24	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56182443--56182910	143	3.3	142	86	2	595	29	20	22	28	1.98
56183289--56183318	15	2.0	15	93	0	51	76	6	0	16	0.99
56184846--56184917	23	3.4	23	71	25	86	27	6	1	63	1.28
56184847--56184924	39	2.0	39	100	0	156	25	7	2	64	1.33
56187123--56187160	17	2.2	17	90	0	58	44	0	15	39	1.47
56192132--56192172	18	2.3	18	87	4	57	36	17	12	34	1.87
56192582--56192662	34	2.4	34	81	8	94	40	14	12	32	1.83
56193690--56193724	3	11.7	3	100	0	70	65	0	0	34	0.93
56195349--56195407	22	2.7	22	72	15	59	42	0	6	50	1.28
56195991--56196071	40	2.0	40	97	0	153	41	14	18	24	1.88
56198282--56198388	45	2.4	45	83	0	142	41	16	17	24	1.90
56198587--56198672	40	2.1	42	84	4	113	41	19	6	31	1.78
56201131--56201179	24	2.0	24	100	0	98	32	30	8	28	1.86
56203684--56203728	23	1.9	24	86	13	67	55	2	22	20	1.54
56205389--56205454	32	2.1	32	94	0	114	37	12	10	39	1.77
56216909--56216939	12	2.6	12	100	0	62	41	0	0	58	0.98
56218041--56218065	7	3.6	7	100	0	50	28	0	12	60	1.32
56218716--56218753	18	2.1	18	95	0	67	23	28	7	39	1.83
56219532--56220022	124	4.0	123	93	1	775	33	21	15	29	1.94
56220631--56220670	21	1.9	21	84	0	53	50	0	0	50	1.00
56223034--56223237	72	2.8	72	89	0	320	28	15	20	35	1.93
56230545--56230626	27	3.0	27	96	0	155	25	21	23	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56234576--56234772	44	4.5	44	70	13	129	33	20	20	25	1.97
56234486--56234782	129	2.3	129	84	0	378	34	20	19	26	1.96
56234476--56234814	129	2.6	129	78	4	355	34	20	18	26	1.96
56237250--56237383	71	1.9	70	90	1	214	28	16	20	34	1.95
56239133--56239189	18	3.0	19	75	14	55	56	1	3	38	1.27
56247609--56247656	21	2.2	22	85	3	62	50	12	6	31	1.65
56248746--56248783	14	2.6	14	84	15	51	39	0	2	57	1.12
56251421--56251886	43	10.8	43	79	4	311	27	24	22	25	2.00
56251634--56251941	129	2.4	129	81	4	318	26	23	24	25	2.00
56252252--56252291	21	1.9	21	84	0	53	5	37	20	37	1.74
56252185--56252418	108	2.2	108	96	1	425	12	28	20	38	1.89
56252360--56252399	21	1.9	21	84	0	53	5	40	20	35	1.74
56254922--56255190	62	4.4	62	91	5	381	31	2	20	46	1.63
56255000--56255105	34	3.3	34	70	24	120	33	2	17	46	1.63
56254906--56255217	9	35.7	9	70	17	212	31	2	19	46	1.63
56255112--56255196	34	2.5	34	96	0	152	28	0	24	47	1.53
56254906--56255217	124	2.6	125	83	10	394	31	2	19	46	1.63
56255309--56255349	13	2.8	15	85	14	59	34	0	19	46	1.50
56255308--56255386	16	5.0	16	75	13	74	34	1	17	46	1.56
56255437--56255487	21	2.4	22	80	9	70	50	1	0	47	1.12
56257226--56257252	11	2.5	11	100	0	54	55	0	18	25	1.43
56258131--56258182	27	1.9	27	84	0	68	48	9	0	42	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56259568--56259634	14	4.9	14	78	14	59	41	29	0	28	1.56
56260127--56260447	41	7.8	41	72	9	224	36	21	23	18	1.95
56260168--56260323	83	1.9	83	86	2	224	37	22	21	19	1.95
56263696--56263742	15	3.2	14	80	16	51	31	2	8	57	1.41
56263700--56263745	14	3.1	14	84	6	56	28	2	8	60	1.38
56267938--56268612	132	5.1	132	98	0	1287	29	26	16	28	1.97
56292753--56292781	8	3.6	8	100	0	58	62	0	0	37	0.96
56292744--56292792	16	2.9	17	82	11	66	55	2	4	38	1.31
56294534--56294598	29	2.2	29	83	5	76	52	6	7	33	1.55
56295953--56295991	3	13.0	3	100	0	78	33	0	0	66	0.92
56306786--56308356	785	2.0	785	97	0	2946	29	22	16	31	1.96
56315103--56315127	11	2.3	11	100	0	50	76	0	24	0	0.80
56318279--56318360	41	2.0	41	100	0	164	26	31	7	34	1.84
56325290--56325339	24	2.1	23	85	3	64	48	4	0	48	1.20
56335881--56335915	16	2.2	16	94	0	61	37	14	14	34	1.86
56342758--56342826	35	2.0	35	97	0	129	50	17	11	20	1.76
56345762--56345905	41	3.5	41	93	0	225	30	21	20	27	1.98
56346043--56346217	64	2.7	67	79	8	182	42	14	8	34	1.77
56347589--56347688	46	2.1	47	92	1	166	28	1	30	41	1.63
56350663--56350708	23	2.0	23	86	0	65	8	41	17	32	1.80
56353140--56353175	19	1.9	19	88	5	56	50	8	0	41	1.33
56355300--56355379	39	2.1	39	95	0	142	20	20	21	38	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56359013--56359057	21	2.0	22	83	8	56	15	11	8	64	1.49
56360650--56360767	41	2.9	41	89	0	164	19	21	33	26	1.97
56361412--56361442	15	2.1	15	93	0	53	19	0	45	35	1.51
56361415--56361452	14	2.6	15	87	4	51	23	0	39	36	1.55
56361456--56361512	15	3.9	15	81	2	71	21	0	43	35	1.52
56361045--56361926	299	3.0	295	85	5	1123	28	2	27	41	1.68
56361713--56361759	14	3.3	15	88	8	71	25	0	34	40	1.56
56361706--56361823	21	5.5	21	70	11	71	27	0	33	38	1.63
56361756--56361829	15	5.1	14	76	16	64	27	1	33	37	1.65
56371107--56371134	3	9.3	3	100	0	56	35	0	32	32	1.58
56371912--56372248	43	7.9	43	82	4	353	29	16	27	26	1.97
56371912--56372263	85	4.1	86	81	5	358	28	17	27	26	1.97
56383661--56383844	45	4.1	44	86	4	228	34	15	20	29	1.94
56383661--56384057	89	4.3	90	73	13	317	32	16	20	30	1.95
56383677--56383864	45	4.2	44	81	9	204	34	16	21	28	1.95
56397648--56397703	24	2.3	24	84	0	76	39	10	17	32	1.84
56398013--56398296	88	3.2	88	89	0	451	27	19	24	28	1.99
56398239--56398739	132	3.8	132	89	1	729	29	19	24	26	1.98
56399016--56399176	88	1.8	88	82	2	207	29	19	21	29	1.98
56402772--56402815	22	2.0	22	86	0	61	38	2	22	36	1.67
56403398--56403454	30	1.9	30	88	0	87	15	15	24	43	1.86
56411855--56411910	24	2.3	24	84	0	76	39	10	17	32	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56412220--56412503	88	3.2	88	89	0	451	27	19	24	28	1.99
56412446--56412946	132	3.8	132	89	1	729	29	19	24	26	1.98
56413223--56413383	88	1.8	88	82	2	207	29	19	21	29	1.98
56416979--56417022	22	2.0	22	86	0	61	38	2	22	36	1.67
56417605--56417661	30	1.9	30	88	0	87	15	15	24	43	1.86
56420701--56420742	21	2.0	21	85	0	57	59	11	0	28	1.33
56420747--56420791	21	2.3	19	84	7	54	46	8	0	44	1.34
56426184--56426377	94	2.1	94	99	0	381	42	18	7	31	1.77
56428139--56428185	16	3.1	16	90	6	71	57	0	0	42	0.98
56433593--56433617	13	1.9	13	100	0	50	24	0	36	40	1.55

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205