genome.fa.s19.2.7.7.80.10.50.1000.178.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  61124829

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   

This is table  178  of  205  ( 24568 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52823124--52823157	17	2.0	17	100	0	68	41	0	0	58	0.98
52823241--52823274	17	2.0	17	100	0	68	41	0	0	58	0.98
52823059--52823294	117	2.0	117	95	0	427	42	2	3	51	1.31
52823241--52823288	15	3.0	15	81	9	51	41	2	0	56	1.11
52823422--52823526	44	2.5	41	77	20	126	37	30	2	29	1.72
52823438--52823528	46	2.0	44	91	8	148	39	30	3	26	1.72
52823508--52823576	16	4.3	16	94	0	120	21	33	5	39	1.77
52831906--52832255	188	1.9	187	88	1	531	31	18	22	27	1.97
52832114--52832363	112	2.2	113	83	7	310	31	17	24	27	1.97
52831871--52832664	300	2.6	299	89	3	1159	32	18	22	26	1.97
52832292--52832428	74	1.9	73	87	1	202	32	16	21	29	1.95
52832340--52832692	114	3.1	113	78	5	381	31	18	23	27	1.97
52832712--52832769	16	3.6	16	92	2	98	32	0	8	58	1.28
52832713--52832786	17	4.1	19	71	22	61	33	0	8	58	1.28
52832712--52832786	32	2.2	33	88	9	107	33	0	8	58	1.27
52841117--52841187	21	3.4	21	86	0	97	32	18	45	4	1.69
52841504--52841802	83	3.5	85	84	8	389	32	22	18	27	1.97
52841506--52841806	130	2.4	129	83	7	366	32	21	18	27	1.97
52841506--52841802	42	7.0	42	80	8	343	31	22	18	27	1.97
52841513--52841882	42	8.7	42	82	5	138	30	20	20	28	1.98
52841785--52842022	42	5.4	41	76	16	183	24	20	23	31	1.98
52845347--52845576	40	5.8	40	86	2	318	26	27	20	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52846790--52846868	37	2.1	37	88	0	113	24	31	20	24	1.98
52846987--52847496	49	10.6	49	93	2	865	30	29	8	32	1.87
52849997--52850095	40	2.5	40	86	3	128	24	18	24	33	1.97
52850065--52850163	41	2.4	41	83	3	110	27	13	26	33	1.93
52852820--52853047	40	5.7	40	95	0	366	21	27	21	29	1.98
52860364--52860390	12	2.2	12	100	0	54	29	7	40	22	1.81
52867033--52867132	27	3.7	28	82	9	109	40	20	10	30	1.85
52867028--52867151	54	2.3	54	79	6	135	38	20	9	30	1.85
52867115--52867177	27	2.3	27	86	0	81	36	28	6	28	1.82
52867074--52867473	81	4.9	80	72	5	230	33	23	8	35	1.85
52867128--52867338	27	7.8	27	90	0	287	28	25	7	38	1.83
52867074--52867338	54	4.9	54	80	1	226	30	24	8	36	1.85
52867252--52867456	54	3.8	54	82	2	169	35	20	8	35	1.84
52867290--52867546	27	9.4	27	80	1	154	38	18	9	33	1.83
52867577--52867664	27	3.3	26	73	12	70	39	20	18	21	1.92
52868439--52868588	26	5.8	26	90	0	230	26	21	24	28	1.99
52868439--52868588	52	2.9	52	94	1	257	26	21	24	28	1.99
52868733--52868824	42	2.2	42	88	0	139	29	13	21	35	1.91
52868847--52868925	31	2.5	31	91	0	131	30	17	25	26	1.97
52871012--52871284	46	5.8	46	89	4	334	21	23	14	40	1.90
52871060--52871289	46	5.0	46	95	0	370	22	23	15	39	1.92
52878474--52878694	101	2.2	101	86	4	304	32	25	13	28	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52879234--52879275	20	2.1	20	100	0	84	52	23	4	19	1.65
52888119--52888306	94	2.0	94	100	0	376	24	15	15	43	1.86
52889554--52889583	12	2.5	12	100	0	60	46	13	0	40	1.43
52896634--52896658	13	1.9	13	100	0	50	32	4	16	48	1.64
52899887--52899969	28	2.9	28	81	10	80	57	4	0	37	1.20
52900064--52900110	22	2.1	22	92	0	76	40	12	27	19	1.88
52901460--52901529	26	2.7	27	74	22	69	58	1	0	40	1.07
52902555--52902700	73	2.0	73	100	0	292	41	8	16	34	1.78
52902786--52902812	10	2.7	10	100	0	54	22	22	29	25	1.99
52907141--52907241	40	2.5	40	93	0	166	31	28	17	21	1.96
52914489--52914562	37	2.0	37	97	0	139	36	21	25	16	1.94
52918075--52918166	38	2.4	38	81	0	103	18	15	23	42	1.88
52921105--52921158	21	2.7	20	83	8	65	29	7	3	59	1.42
52921105--52921163	20	2.9	20	82	9	66	28	6	5	59	1.45
52923334--52923375	23	1.9	23	90	9	70	71	4	0	23	1.05
52931147--52931176	12	2.6	11	90	10	51	46	10	30	13	1.75
52931597--52931622	7	3.7	7	100	0	52	38	0	0	61	0.96
52949317--52949380	33	2.0	32	96	3	119	48	25	0	26	1.51
52949345--52949467	23	5.0	23	72	15	93	46	24	0	28	1.58
52949317--52949430	33	3.9	31	76	16	111	45	28	0	26	1.54
52949345--52949462	24	4.7	24	73	18	80	46	25	0	27	1.53
52949464--52949688	116	1.9	116	88	3	337	37	9	10	41	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52952716--52953068	126	2.8	125	89	0	526	32	22	15	28	1.95
52955782--52955861	39	2.1	39	97	0	151	16	23	13	46	1.83
52957330--52957361	16	2.0	16	93	0	55	21	18	31	28	1.97
52957787--52957833	22	2.1	22	88	0	67	19	34	0	46	1.50
52961988--52962110	62	2.0	62	93	3	212	17	12	26	43	1.85
52964839--52964863	12	2.1	12	100	0	50	24	0	0	76	0.80
52967472--52967530	10	5.8	10	76	11	57	67	0	3	28	1.06
52967527--52967599	20	3.7	20	70	18	55	58	5	8	27	1.49
52968004--52968230	87	2.7	84	82	9	255	34	11	20	33	1.89
52968004--52968259	84	3.0	83	80	7	241	34	10	19	34	1.87
52969366--52970244	247	3.6	247	89	2	1286	42	11	14	32	1.81
52973159--52973213	25	2.2	26	80	9	69	36	16	30	16	1.91
52981833--52981997	49	3.3	50	72	13	142	38	22	25	13	1.90
52981833--52981997	24	6.6	26	73	10	139	38	22	25	13	1.90
52985933--52985976	19	2.2	20	88	4	63	72	2	0	25	0.96
52986098--52986172	10	7.7	10	72	11	66	65	4	0	30	1.11
52986098--52986134	18	1.9	18	89	10	56	67	2	0	29	1.04
52986003--52986172	49	3.5	47	78	16	159	61	5	1	31	1.29
52988655--52988695	20	2.0	21	86	9	59	36	14	9	39	1.79
52990862--52991033	50	3.4	52	85	7	214	41	12	13	31	1.82
52993222--52993257	18	2.1	18	89	5	56	16	11	13	58	1.63
52995839--52995920	40	2.0	40	97	0	155	40	18	14	26	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52999263--52999311	25	2.0	25	84	8	64	48	2	26	22	1.61
52999746--52999818	19	3.7	19	76	20	71	61	0	4	34	1.15
52999823--52999851	15	2.0	15	93	6	51	58	0	6	34	1.25
53001066--53001094	2	14.5	2	100	0	58	48	0	0	51	1.00
53001695--53001740	19	2.5	18	82	3	56	36	0	4	58	1.18
53010262--53010306	19	2.2	20	85	14	58	55	6	2	35	1.38
53013861--53013900	14	2.9	14	84	0	53	32	7	17	42	1.77
53013869--53013935	35	1.9	35	87	3	100	31	10	13	44	1.77
53013884--53013923	20	2.0	20	85	0	53	27	12	12	47	1.77
53016029--53016168	59	2.4	58	91	1	226	39	3	4	52	1.38
53016923--53016950	14	2.0	14	100	0	56	35	7	7	50	1.57
53033672--53033713	21	2.0	21	85	0	57	42	16	4	35	1.69
53038527--53038714	51	3.7	50	81	3	198	31	27	15	25	1.96
53038628--53038660	14	2.5	13	90	9	50	39	27	9	24	1.85
53052250--53052398	74	2.0	75	90	1	237	27	10	19	42	1.84
53052498--53053158	73	9.1	75	78	10	497	26	22	14	36	1.93
53052502--53053125	108	5.7	106	80	9	492	26	22	14	37	1.92
53052494--53053158	148	4.6	146	80	7	669	25	23	14	36	1.93
53052498--53053158	37	18.1	38	78	9	603	26	22	14	36	1.93
53055742--53055783	15	2.8	15	85	7	59	0	33	9	57	1.31
53061288--53061341	24	2.3	23	83	6	63	37	1	3	57	1.27
53063104--53063153	23	2.2	23	92	0	82	24	16	14	46	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53063331--53063377	23	2.1	23	88	7	71	34	17	17	31	1.92
53067756--53067785	12	2.5	12	94	0	51	6	30	40	23	1.80
53075570--53075677	51	2.1	52	89	5	166	29	17	8	44	1.78
53085152--53085193	20	2.1	20	86	0	57	47	0	7	45	1.30
53085548--53085584	17	2.1	18	95	5	67	21	10	24	43	1.84
53085909--53086043	49	2.7	49	78	5	139	31	22	24	22	1.99
53089729--53089781	26	2.0	26	100	0	106	18	11	26	43	1.84
53093407--53093653	50	4.8	50	79	7	205	28	21	27	23	1.99
53093460--53093653	50	3.9	50	82	4	214	27	22	28	21	1.99
53095348--53095594	50	4.8	50	79	7	205	28	21	27	23	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205