genome.fa.s19.2.7.7.80.10.50.1000.130.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  61124829

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   

This is table  130  of  205  ( 24568 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39405385--39405569	79	2.3	82	84	7	238	25	27	22	24	2.00
39405366--39405569	40	5.1	40	82	8	238	25	27	22	25	2.00
39408937--39409069	30	4.4	31	77	5	112	22	27	12	36	1.91
39408907--39409125	90	2.5	88	81	2	269	22	26	14	36	1.92
39417533--39417564	13	2.5	13	94	0	55	31	0	12	56	1.37
39417659--39417907	50	4.8	50	85	5	284	27	22	28	21	1.99
39417659--39417908	100	2.4	103	85	6	328	27	22	28	21	1.99
39426521--39426641	29	4.2	29	90	0	161	19	26	14	39	1.90
39433411--39433436	3	8.7	3	100	0	52	30	34	0	34	1.58
39448405--39448549	47	3.1	47	83	0	182	26	32	10	31	1.90
39456108--39456170	27	2.3	27	88	0	99	20	28	23	26	1.99
39458085--39458132	25	1.9	25	87	8	71	37	22	20	18	1.94
39465886--39466080	51	3.9	50	79	6	214	30	27	17	24	1.97
39465895--39466079	101	1.8	101	89	3	291	31	27	17	23	1.97
39472363--39472395	17	1.9	17	93	0	57	57	15	12	15	1.65
39474042--39474200	80	2.0	80	98	0	309	48	11	18	21	1.79
39474838--39475032	89	2.2	89	100	0	390	30	18	15	34	1.93
39475834--39475864	15	2.1	15	93	0	53	41	6	9	41	1.63
39481798--39481992	89	2.2	89	100	0	390	29	18	17	34	1.94
39489160--39489383	40	5.6	40	91	1	308	24	20	28	26	1.99
39489121--39489383	80	3.3	80	85	3	318	23	20	28	26	1.99
39489121--39489383	120	2.2	120	82	4	318	23	20	28	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39497108--39497317	40	5.3	39	87	5	233	24	21	28	25	1.99
39497055--39497317	120	2.2	120	81	4	300	25	21	27	25	1.99
39497108--39497352	80	3.1	80	81	3	228	25	21	28	24	1.99
39501766--39501813	18	2.7	17	81	15	53	68	0	20	10	1.18
39505894--39505928	9	3.9	9	88	11	54	62	0	2	34	1.10
39505893--39505928	17	2.1	18	94	5	65	61	0	2	36	1.11
39509650--39509709	27	2.2	27	96	0	111	23	3	18	55	1.58
39522874--39522940	3	22.7	3	71	14	50	31	4	1	62	1.24
39522891--39522944	15	3.9	13	80	15	56	27	5	1	64	1.26
39527904--39527941	10	3.8	10	86	6	51	78	0	21	0	0.74
39527905--39527941	15	2.5	15	87	12	58	81	0	18	0	0.70
39530363--39530493	46	2.7	49	83	11	169	40	16	28	14	1.88
39531608--39532600	51	20.2	51	75	10	764	29	16	24	29	1.97
39531608--39532600	148	6.7	147	74	11	709	29	16	24	29	1.97
39531609--39532390	199	3.9	199	82	4	829	29	16	25	29	1.97
39532226--39532312	43	2.0	43	93	0	147	29	11	25	33	1.91
39532600--39532717	44	2.6	45	79	1	130	36	16	19	27	1.94
39534175--39534216	18	2.3	19	88	12	61	23	2	0	73	0.94
39535982--39536035	28	2.0	28	96	3	101	31	25	18	24	1.97
39538873--39538939	28	2.4	28	97	0	125	29	26	23	19	1.98
39539332--39539593	27	9.7	27	81	4	278	18	17	19	45	1.86
39539332--39539593	81	3.2	80	86	3	348	18	17	19	45	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39545027--39545234	43	4.9	43	79	8	147	19	21	18	40	1.91
39545027--39545205	43	4.2	43	81	5	166	19	20	18	41	1.91
39549226--39549284	20	3.0	20	69	11	59	22	33	18	25	1.96
39549226--39549342	39	3.0	39	92	1	191	20	30	19	29	1.97
39551424--39551640	15	14.5	15	73	0	119	21	30	13	34	1.92
39551426--39551658	24	9.7	24	73	5	148	20	31	13	34	1.91
39551438--39551646	30	7.0	30	75	8	165	21	31	13	33	1.92
39551426--39551625	39	5.0	39	82	7	177	21	31	14	33	1.93
39551609--39551659	18	2.8	18	81	0	57	15	37	9	37	1.81
39551427--39551652	39	5.6	39	78	6	164	20	31	14	34	1.92
39552049--39552075	12	2.2	12	100	0	54	0	14	0	85	0.61
39555072--39555318	50	4.8	50	84	4	271	27	20	29	22	1.99
39555079--39555318	99	2.3	103	83	4	281	26	20	29	22	1.99
39555133--39555357	99	2.3	98	79	4	238	27	21	28	22	1.99
39560605--39560648	23	1.9	23	86	9	63	18	27	6	47	1.73
39562190--39562228	20	2.0	20	90	10	62	15	23	5	56	1.59
39566410--39566587	27	6.6	27	83	3	205	26	15	28	29	1.96
39566411--39566566	82	1.9	81	88	3	233	26	15	28	29	1.96
39566407--39566587	82	2.2	81	83	2	229	27	15	27	29	1.96
39575189--39575417	42	5.3	42	64	26	129	28	14	17	39	1.89
39575124--39575478	88	4.0	88	99	0	692	28	14	18	38	1.90
39577478--39577662	79	2.3	80	81	7	207	25	28	22	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39577459--39577662	40	5.1	40	79	8	211	25	27	22	25	1.99
39581797--39581951	78	2.0	78	98	0	301	33	23	18	25	1.96
39584189--39584417	57	4.0	57	100	0	458	19	30	29	20	1.97
39592274--39592337	32	2.0	32	100	0	128	37	15	15	31	1.89
39592709--39592803	45	2.1	45	94	0	163	31	23	17	27	1.97
39592809--39592995	51	3.7	51	73	11	177	31	26	16	25	1.96
39592808--39592991	101	1.8	102	86	3	273	32	26	16	25	1.96
39604894--39604999	48	2.2	48	89	0	158	40	28	14	16	1.88
39604894--39605013	48	2.5	47	86	4	143	40	27	15	17	1.89
39611366--39611430	30	2.2	30	100	0	130	23	27	12	36	1.90
39624576--39624759	40	4.6	40	85	4	201	26	27	21	24	1.99
39624691--39624768	40	1.9	41	82	10	97	26	28	21	23	1.99
39633607--39633816	40	5.3	39	89	4	242	25	21	27	25	1.99
39633554--39633816	120	2.2	120	82	4	309	25	21	27	25	1.99
39633555--39633851	80	3.7	80	81	6	230	26	21	27	24	1.99
39641557--39641766	40	5.3	39	89	4	242	25	21	27	25	1.99
39641504--39641766	120	2.2	120	82	4	309	25	21	27	25	1.99
39641505--39641801	80	3.7	80	81	6	230	26	21	27	24	1.99
39643468--39643562	47	2.0	47	93	0	163	34	23	24	17	1.96
39645362--39645489	43	3.0	44	76	19	144	22	17	29	29	1.97
39651388--39651515	43	3.0	42	71	19	111	23	15	29	31	1.95
39651549--39651639	46	2.0	46	93	0	155	37	13	20	28	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39651853--39651881	3	9.7	3	100	0	58	68	0	0	31	0.89
39654553--39654617	30	2.2	30	82	0	76	35	7	26	30	1.84
39654946--39655314	103	3.6	104	93	1	591	20	20	30	28	1.97
39659445--39659475	14	2.2	14	100	0	62	25	19	12	41	1.87
39662484--39662520	16	2.3	16	90	0	56	8	2	21	67	1.29
39681460--39681510	2	26.0	2	76	11	52	47	3	3	45	1.40
39681457--39681509	12	4.2	12	81	13	61	45	3	5	45	1.45
39682177--39682285	41	2.6	41	86	1	146	25	21	26	26	1.99
39698383--39698868	44	11.0	42	76	8	416	27	17	26	28	1.98
39698383--39698861	132	3.6	132	95	0	805	27	17	26	29	1.98
39706888--39706938	2	26.0	2	76	11	52	47	3	3	45	1.40
39706885--39706937	12	4.2	12	81	13	61	45	3	5	45	1.45
39707440--39707518	41	1.9	41	89	5	124	20	20	13	45	1.85
39708395--39708777	40	9.6	40	94	0	608	27	27	19	24	1.99
39712832--39712889	25	2.3	25	90	0	89	39	13	25	20	1.90
39715740--39715801	28	2.2	28	82	5	72	35	17	24	22	1.95
39715784--39715885	28	3.6	28	78	0	96	37	16	20	25	1.93
39715763--39715894	28	4.7	28	75	0	93	34	18	22	24	1.96
39717870--39718047	27	6.6	27	80	5	171	29	28	15	26	1.96
39717891--39718046	82	1.9	81	84	3	206	29	28	16	26	1.96
39719740--39720134	40	9.6	40	77	11	318	27	28	20	24	1.99
39720628--39720805	47	3.7	47	87	3	257	33	7	30	28	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39720626--39720805	96	1.9	94	90	2	288	32	7	31	28	1.85
39722405--39722444	20	2.0	20	85	5	53	52	17	15	15	1.75
39725136--39725202	20	3.3	20	89	0	98	32	11	20	34	1.90
39725252--39725405	24	6.4	24	93	0	263	29	20	22	28	1.98
39727764--39727839	40	1.9	40	86	10	111	18	15	30	35	1.92
39729325--39729388	31	2.1	31	90	0	101	26	21	14	37	1.92
39729602--39729679	25	3.2	24	78	7	95	32	21	17	28	1.96
39729602--39729704	25	4.2	25	75	11	88	30	21	20	28	1.98
39737414--39737477	31	2.1	31	96	0	119	29	25	10	34	1.90
39737703--39737776	25	3.0	25	76	4	69	29	24	22	22	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205