genome.fa.s19.2.7.7.80.10.50.1000.67.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  61124829

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   

This is table  67  of  205  ( 24568 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20017494--20017955	44	10.8	44	69	12	169	24	19	22	33	1.97
20017712--20017909	40	4.8	41	73	11	161	23	21	23	31	1.98
20017524--20017955	127	3.4	127	88	0	567	23	18	23	34	1.96
20017957--20020004	50	41.3	49	68	7	927	25	22	21	30	1.99
20017960--20018314	98	3.6	98	89	1	496	25	22	21	30	1.99
20018291--20019351	100	10.7	100	84	5	1267	25	22	21	30	1.99
20018291--20019351	199	5.3	198	84	5	1175	25	22	21	30	1.99
20018291--20019351	299	3.6	298	84	4	1334	25	22	21	30	1.99
20019335--20020005	299	2.3	298	83	6	842	26	21	20	30	1.98
20020080--20020384	44	7.0	43	77	4	261	29	26	15	27	1.96
20020070--20020359	132	2.2	132	85	3	388	28	26	15	29	1.96
20021812--20021860	11	4.6	11	76	16	50	2	12	6	79	0.99
20025299--20025347	19	2.5	19	77	16	55	51	0	12	36	1.40
20025673--20025721	25	2.0	24	84	4	62	53	0	6	40	1.26
20038211--20038321	46	2.4	47	86	6	154	33	1	5	59	1.31
20040056--20040177	58	2.1	59	90	3	194	43	7	20	28	1.79
20043666--20043700	16	2.2	16	89	0	52	37	5	0	57	1.23
20043687--20043801	57	1.9	59	89	6	180	43	3	4	48	1.39
20044562--20044596	15	2.3	15	90	0	52	40	8	42	8	1.66
20050527--20050593	30	2.3	29	87	5	91	34	14	2	47	1.60
20051458--20051498	20	2.0	20	85	0	55	46	2	9	41	1.50
20051871--20052228	180	2.0	180	96	0	653	25	15	16	42	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20059908--20059985	17	4.4	18	71	10	63	58	3	35	1	1.24
20059913--20059981	36	2.0	34	83	11	86	59	4	34	1	1.26
20061892--20061926	14	2.5	14	85	0	52	34	17	5	42	1.73
20065801--20065992	49	3.8	49	86	5	244	44	11	10	32	1.76
20073191--20073216	6	4.3	6	100	0	52	15	0	0	84	0.62
20086679--20086722	22	2.0	23	86	4	63	65	2	0	31	1.05
20086678--20086727	22	2.4	21	77	9	57	66	2	0	32	1.03
20087322--20087364	22	2.0	22	85	0	59	53	0	0	46	1.00
20087385--20087426	13	2.9	14	80	13	50	54	0	0	45	0.99
20087389--20087425	16	2.3	16	86	13	58	59	0	0	40	0.97
20087974--20088012	14	2.8	13	92	7	60	33	15	7	43	1.75
20091253--20091290	17	2.2	17	90	9	60	28	0	2	68	1.03
20094513--20094549	14	2.6	14	91	0	65	45	43	0	10	1.39
20095259--20095652	197	2.0	197	98	0	770	27	24	16	32	1.96
20115398--20115450	23	2.3	23	93	0	88	26	28	9	35	1.87
20115564--20115595	17	1.9	16	93	6	55	43	9	0	46	1.35
20115836--20115876	20	2.2	20	86	8	59	31	9	9	48	1.69
20117563--20117769	43	4.8	43	84	5	267	22	17	27	32	1.97
20119455--20119485	4	7.8	4	92	0	53	74	0	3	22	0.96
20130100--20130166	28	2.3	28	79	7	71	22	14	7	55	1.65
20131816--20131865	23	2.2	22	78	3	55	6	22	2	70	1.20
20140180--20140205	11	2.4	11	100	0	52	50	7	42	0	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20140864--20140905	9	4.8	9	77	16	52	33	0	7	59	1.25
20141256--20141351	39	2.5	39	80	6	108	20	23	28	27	1.99
20143139--20143176	17	2.2	17	90	0	58	76	2	7	13	1.11
20156584--20156633	17	2.8	18	90	6	75	42	46	0	12	1.41
20156615--20156731	39	3.0	38	90	6	182	48	29	4	17	1.66
20156857--20156931	37	2.0	37	89	0	114	36	8	12	44	1.71
20164564--20164674	51	2.2	51	88	1	161	24	22	33	19	1.97
20166732--20166797	30	2.2	30	89	5	98	34	13	21	30	1.92
20173997--20174052	24	2.1	28	78	18	75	46	3	3	46	1.37
20173999--20174063	26	2.6	26	90	4	98	47	4	3	44	1.39
20178344--20178368	9	2.8	9	100	0	50	20	0	44	36	1.52
20183236--20183341	25	4.2	25	72	12	92	48	5	7	38	1.55
20184032--20184117	36	2.4	37	82	9	106	46	0	3	50	1.18
20183978--20184153	90	1.9	92	86	4	250	46	2	3	47	1.33
20184100--20184134	18	2.0	17	88	5	52	45	0	0	54	0.99
20184220--20184254	18	2.0	17	88	5	52	45	0	0	54	0.99
20184706--20184741	19	1.9	19	88	5	56	5	0	27	66	1.13
20186142--20186189	22	2.1	21	85	11	60	37	10	2	50	1.49
20194013--20194113	42	2.3	42	84	5	121	20	8	13	56	1.64
20194131--20194216	21	4.2	20	76	10	75	20	8	12	58	1.60
20197482--20197512	15	2.0	16	93	6	55	64	6	16	12	1.47
20202718--20202790	36	2.0	36	86	0	101	38	13	23	24	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20260331--20260450	43	2.8	43	84	0	150	26	23	16	33	1.96
20262322--20262356	15	2.4	15	90	4	54	48	0	8	42	1.33
20267210--20267256	3	15.7	3	100	0	94	34	0	0	65	0.93
20270030--20270060	9	3.4	9	100	0	62	22	9	12	54	1.67
20271625--20271669	6	7.0	6	85	14	63	20	0	2	77	0.87
20275073--20275382	33	8.7	33	71	19	182	30	27	21	20	1.98
20275074--20275357	75	3.8	75	90	0	469	30	27	21	20	1.98
20275074--20275359	150	1.9	150	95	1	520	30	27	20	21	1.98
20287339--20287385	21	2.2	21	77	7	51	21	17	19	42	1.89
20292730--20292761	6	5.3	6	92	0	55	15	0	3	81	0.82
20292722--20292774	18	3.1	18	76	7	58	18	0	3	77	0.92
20293957--20294008	24	2.2	24	96	0	95	26	13	9	50	1.72
20298949--20298986	16	2.5	15	84	12	51	26	2	31	39	1.70
20299924--20300392	146	3.2	144	80	4	413	26	14	21	36	1.93
20302810--20302861	13	4.0	13	82	5	61	44	7	1	46	1.43
20302893--20303067	36	5.4	36	68	25	163	42	8	7	41	1.62
20302833--20303085	63	4.0	63	95	2	427	42	8	7	41	1.64
20302992--20303085	27	3.1	27	68	23	80	44	6	8	40	1.60
20303084--20303127	23	1.9	23	95	0	79	43	18	0	38	1.50
20303107--20303203	38	2.5	39	94	5	169	46	12	0	41	1.41
20303184--20303415	9	26.0	9	85	3	317	46	19	0	33	1.56
20303146--20303415	27	10.4	25	77	10	224	46	18	0	34	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20303390--20303466	33	2.3	33	100	0	154	36	20	2	40	1.67
20308763--20309086	42	7.6	42	85	4	172	25	19	21	34	1.96
20308837--20309088	84	3.0	84	90	1	398	23	19	21	35	1.96
20308795--20309087	126	2.3	126	88	4	419	23	19	21	34	1.97
20311631--20311674	21	2.1	21	91	0	70	31	20	47	0	1.50
20311966--20311990	12	2.1	12	100	0	50	16	0	24	60	1.36
20312105--20312197	42	2.2	43	86	1	125	25	19	24	30	1.98
20312122--20312285	43	3.9	42	79	10	142	25	23	20	31	1.98
20312630--20312672	19	2.2	20	80	12	54	32	16	0	51	1.45
20312754--20312888	45	3.0	44	83	5	171	35	25	15	23	1.94
20312887--20313090	51	4.0	51	76	8	209	27	28	18	25	1.98
20312895--20313081	101	1.8	101	88	3	286	28	27	19	24	1.98
20313868--20313943	25	3.2	24	78	15	86	39	15	23	21	1.92
20320316--20320349	16	2.1	17	88	5	52	35	0	5	58	1.22
20337697--20337827	44	3.0	44	90	0	199	28	16	25	30	1.96
20337697--20337955	87	3.0	87	80	6	240	28	19	24	27	1.99
20337821--20338251	44	9.9	44	70	10	269	30	21	22	25	1.99
20337804--20338038	87	2.7	88	87	0	319	29	22	24	24	1.99
20337828--20338256	87	4.9	87	71	13	292	30	21	22	25	1.99
20337960--20338497	216	2.5	215	88	2	765	31	20	21	26	1.98
20338438--20338560	44	2.8	44	92	0	201	25	20	21	32	1.98
20345694--20345737	23	1.9	23	90	0	70	65	0	2	31	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20345683--20345742	31	2.0	30	84	12	79	65	1	1	31	1.13
20346311--20346349	20	1.9	21	84	5	53	61	2	5	30	1.31
20354139--20354171	7	4.7	7	100	0	66	30	0	0	69	0.88
20356990--20357025	18	2.0	18	100	0	72	27	16	5	50	1.68
20358688--20358719	12	2.7	12	95	0	55	31	15	3	50	1.60
20363620--20363816	98	2.0	98	93	0	340	38	23	9	28	1.85
20365233--20365311	22	3.7	21	74	16	63	40	17	5	36	1.72
20365233--20365290	22	2.6	22	81	7	64	41	18	3	36	1.68
20365280--20365323	21	2.1	21	95	0	79	38	11	9	40	1.73
20365269--20365324	21	2.8	19	84	10	76	37	14	8	39	1.77

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205