genome.fa.s19.2.7.7.80.10.50.1000.55.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  61124829

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   

This is table  55  of  205  ( 24568 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16572401--16572616	114	1.9	114	91	0	351	25	26	24	24	2.00
16573499--16573559	31	2.0	31	93	0	104	44	11	8	36	1.71
16573998--16574029	15	2.1	16	94	5	57	37	3	0	59	1.13
16575352--16575409	26	2.2	28	82	14	79	48	5	1	44	1.35
16578200--16578260	26	2.3	26	91	0	95	32	18	6	42	1.76
16578200--16578273	26	2.8	26	85	4	87	35	16	6	41	1.74
16585896--16585970	30	2.5	30	91	0	123	45	9	20	25	1.80
16587871--16587966	25	3.7	26	71	13	90	34	7	0	58	1.26
16587882--16587963	17	4.6	17	70	14	67	36	7	0	56	1.27
16587882--16587991	54	2.0	57	96	3	192	35	9	0	55	1.32
16588077--16588132	20	2.8	21	73	10	55	26	5	0	67	1.11
16595901--16595955	27	2.0	27	82	6	67	43	3	1	50	1.30
16598993--16599036	22	1.9	24	86	9	65	43	2	13	40	1.57
16600511--16600547	9	4.1	9	86	13	58	45	10	10	32	1.74
16601417--16601443	5	5.4	5	100	0	54	22	18	22	37	1.95
16602354--16602399	24	1.9	24	82	8	58	41	19	19	19	1.91
16606170--16606242	9	8.3	9	72	6	51	1	19	1	78	0.91
16607493--16607563	24	3.2	21	77	15	63	40	1	0	57	1.07
16607503--16607567	21	2.9	22	82	11	71	38	1	0	60	1.07
16607512--16607575	22	3.0	22	77	9	69	34	3	0	62	1.11
16609039--16609068	15	1.9	15	93	6	51	66	20	6	6	1.38
16609069--16609131	27	2.3	27	88	0	99	30	22	33	14	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16609323--16609385	19	3.3	19	68	0	63	41	9	3	46	1.52
16609420--16609454	17	2.0	17	88	5	52	48	0	17	34	1.47
16610784--16610845	27	2.3	27	94	0	106	12	35	22	29	1.91
16612951--16612988	20	2.0	20	89	5	60	57	5	0	36	1.21
16612956--16612998	20	2.2	20	83	8	52	62	6	0	30	1.21
16618577--16618618	20	2.1	20	86	0	57	19	16	35	28	1.93
16630467--16630507	3	13.7	3	100	0	82	34	0	0	65	0.93
16637688--16637736	26	1.9	26	88	12	75	44	8	28	18	1.78
16637686--16637742	26	2.2	25	78	9	71	52	7	24	15	1.67
16642265--16642321	24	2.4	24	79	5	71	14	21	10	54	1.69
16642261--16642335	24	3.2	24	77	9	66	14	20	12	53	1.72
16642301--16642397	36	2.6	36	81	6	113	21	25	7	45	1.77
16642301--16642395	40	2.5	37	83	6	111	22	26	7	44	1.79
16651364--16651419	3	18.7	3	96	0	103	32	0	33	33	1.58
16654925--16654957	11	3.0	11	95	0	57	54	9	6	30	1.56
16657210--16657239	6	5.0	6	100	0	60	16	0	0	83	0.65
16661164--16661287	66	1.9	66	80	6	144	30	8	6	54	1.55
16661891--16661953	30	2.1	30	93	0	108	25	3	14	57	1.52
16668531--16668568	18	2.1	18	85	9	51	36	2	0	60	1.11
16672581--16672695	25	4.6	25	76	2	115	28	20	26	24	1.99
16680186--16680244	21	2.8	21	78	0	73	20	38	20	20	1.93
16687564--16687611	20	2.3	20	79	10	53	33	0	8	58	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16689122--16689147	7	3.7	7	100	0	52	11	0	0	88	0.52
16693234--16693293	26	2.3	26	91	2	95	41	23	20	15	1.89
16696198--16696235	20	1.9	20	88	0	58	50	10	5	34	1.59
16700481--16700533	23	2.3	23	80	0	70	32	24	20	22	1.98
16700542--16700632	23	4.0	23	91	8	150	30	26	19	23	1.98
16700861--16700899	18	2.2	17	86	13	53	46	20	0	33	1.51
16710388--16710427	3	13.3	3	100	0	80	67	0	0	32	0.91
16712484--16712527	19	2.3	19	88	0	70	31	2	15	50	1.57
16716359--16716417	19	3.2	19	97	2	111	38	3	15	42	1.63
16723868--16723928	31	2.0	31	90	0	95	26	19	4	49	1.69
16734351--16734392	18	2.4	17	88	11	66	33	9	33	23	1.87
16735537--16735581	9	5.1	9	82	15	58	44	0	2	53	1.13
16735736--16735775	4	10.0	4	94	0	71	47	0	2	50	1.14
16752462--16752509	2	24.0	2	100	0	96	0	50	0	50	1.00
16753435--16753479	15	2.9	16	75	21	51	35	4	0	60	1.17
16754180--16754207	5	5.6	5	100	0	56	17	0	0	82	0.68
16757330--16757547	97	2.2	97	88	3	314	30	22	23	23	1.99
16757277--16757547	47	5.3	50	83	10	288	32	22	22	22	1.98
16758476--16758547	31	2.3	31	80	4	92	65	5	6	22	1.38
16758476--16758556	31	2.6	31	76	7	85	65	4	6	23	1.35
16760727--16760854	40	3.2	39	91	5	204	21	17	7	53	1.69
16760837--16760911	5	14.6	5	73	15	55	18	20	0	61	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16760834--16760871	18	2.1	18	95	0	67	15	13	0	71	1.16
16760830--16760879	23	2.2	23	85	7	66	16	12	0	72	1.13
16760998--16761250	53	4.8	53	96	0	470	27	11	1	59	1.41
16760998--16761250	107	2.4	107	97	0	472	27	11	1	59	1.41
16763609--16763953	51	6.8	50	81	10	324	22	23	22	31	1.99
16763755--16763953	56	3.7	55	79	11	234	21	24	22	32	1.98
16764585--16764650	33	2.0	34	84	3	89	51	4	1	42	1.31
16769033--16769065	15	2.3	15	89	5	50	27	0	30	42	1.56
16774248--16774345	42	2.3	42	85	1	124	33	29	13	23	1.93
16779676--16779755	40	2.0	40	97	0	151	30	17	11	41	1.84
16780565--16780608	19	2.2	20	84	4	54	65	4	2	27	1.23
16783088--16783130	21	2.1	20	82	4	50	39	11	13	34	1.82
16788623--16788656	15	2.2	16	89	5	52	0	23	0	76	0.79
16792920--16792963	23	1.9	22	82	17	54	36	25	0	38	1.56
16793008--16793096	45	2.0	45	88	0	133	33	21	17	26	1.96
16793103--16793183	26	3.2	26	62	28	64	33	28	14	23	1.94
16805293--16805343	17	3.1	16	77	8	57	0	27	0	72	0.85
16805295--16805341	16	2.8	17	83	3	60	0	25	0	74	0.82
16807996--16808028	16	2.1	16	94	0	57	27	33	6	33	1.81
16809935--16809974	18	2.2	19	86	4	55	17	15	2	65	1.39
16817021--16817073	27	2.0	27	96	0	97	32	3	26	37	1.74
16822022--16822065	14	3.1	14	90	0	70	4	25	20	50	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16822135--16822191	25	2.4	24	88	11	82	0	24	21	54	1.45
16824095--16824160	18	3.7	18	95	0	114	34	15	12	37	1.84
16824577--16824747	72	2.4	72	87	4	249	25	5	12	56	1.58
16826126--16826165	21	1.9	21	85	10	55	32	10	35	22	1.87
16827157--16827223	34	1.9	35	87	3	100	31	8	14	44	1.76
16839441--16839481	22	1.9	21	85	14	57	21	0	7	70	1.11
16844816--16844910	30	3.2	29	79	18	106	27	15	23	33	1.95
16844834--16844910	29	2.6	30	91	2	120	24	16	24	33	1.96
16847025--16847049	12	2.1	12	100	0	50	68	0	0	32	0.90
16847031--16847089	28	2.1	28	83	3	73	61	3	3	32	1.29
16849602--16849655	28	2.0	28	82	10	67	35	27	22	14	1.93
16851530--16851579	20	2.5	20	83	0	73	18	40	20	22	1.92
16853095--16853127	15	2.3	15	94	5	59	51	6	3	39	1.42
16853347--16853541	57	3.6	54	85	5	229	22	17	14	45	1.84
16853397--16853541	54	2.9	49	81	9	182	22	17	13	46	1.83
16856294--16856336	21	2.0	23	81	9	54	34	11	9	44	1.73
16863786--16864047	66	4.0	66	89	0	389	40	21	11	25	1.88
16868522--16868659	66	2.1	63	85	4	177	20	12	25	42	1.87
16870505--16871357	432	2.0	431	92	0	1411	31	15	22	30	1.95
16873521--16873579	14	3.4	19	69	26	67	15	16	0	67	1.23
16873515--16873578	32	2.0	32	93	3	112	14	18	0	67	1.24
16874773--16874797	6	4.2	6	100	0	50	16	0	0	84	0.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16885854--16886169	108	2.9	108	88	3	456	35	19	15	28	1.93
16888484--16888705	44	5.1	43	71	14	152	27	20	19	32	1.97
16888479--16888716	129	1.8	129	86	1	343	27	20	19	32	1.97
16888696--16889283	50	11.8	49	68	5	259	25	21	21	32	1.98
16888696--16889285	100	5.9	99	83	2	671	25	21	21	32	1.98
16889271--16889906	132	4.8	132	90	0	925	27	22	17	32	1.96
16889904--16890486	89	6.6	89	87	1	796	22	23	22	30	1.99
16889904--16890467	267	2.1	267	90	1	889	22	23	23	30	1.99
16891745--16891808	10	6.6	10	75	21	57	0	21	0	78	0.76
16891745--16891784	6	7.0	6	78	21	50	0	20	0	80	0.72

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205