genome.fa.s19.2.7.7.80.10.50.1000.141.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  61124829

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   

This is table  141  of  205  ( 24568 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42816062--42816136	37	2.1	37	82	12	93	25	8	21	45	1.79
42818618--42818676	30	2.0	30	89	0	91	32	13	25	28	1.94
42821783--42821807	13	1.9	13	100	0	50	32	20	40	8	1.81
42826695--42826763	36	1.9	36	96	0	129	26	7	21	44	1.78
42827400--42827446	16	3.0	16	84	9	62	51	0	6	42	1.27
42827808--42827834	14	1.9	14	100	0	54	51	0	11	37	1.37
42828967--42829013	25	1.9	24	83	12	60	23	19	17	40	1.91
42836071--42836169	52	1.9	52	91	0	162	35	14	22	28	1.93
42837022--42837046	11	2.3	11	100	0	50	16	0	28	56	1.41
42838657--42838714	24	2.4	24	79	0	71	43	6	24	25	1.79
42839705--42839770	24	2.8	24	83	0	69	40	7	30	21	1.81
42839994--42840052	15	3.9	15	77	4	57	57	0	1	40	1.09
42841361--42841394	17	2.0	17	94	0	59	47	2	8	41	1.50
42841432--42841499	35	1.9	35	96	0	127	33	7	19	39	1.79
42843757--42843933	49	3.6	49	78	6	196	29	18	26	25	1.98
42851073--42851249	49	3.6	49	80	11	200	26	19	28	24	1.99
42856967--42857066	52	1.9	52	91	0	164	39	24	16	21	1.92
42857376--42857508	66	2.0	66	97	0	248	27	27	19	25	1.99
42859954--42860177	112	2.0	112	95	0	403	29	20	17	31	1.96
42861124--42861255	40	3.3	40	88	2	185	28	28	20	22	1.99
42861124--42861308	40	4.6	39	82	6	183	27	28	20	23	1.99
42861240--42861317	40	1.9	41	82	10	97	26	28	21	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42870807--42870861	27	2.0	27	100	0	110	45	18	21	14	1.85
42881189--42881230	22	1.9	22	85	9	59	38	21	0	40	1.53
42888381--42888546	42	3.9	42	81	4	181	33	16	24	25	1.96
42911114--42911147	18	1.9	18	88	5	52	29	8	20	41	1.82
42912200--42912281	30	2.8	29	81	5	103	31	30	13	24	1.93
42912200--42912315	29	4.0	28	80	4	115	30	29	13	26	1.94
42913828--42913858	16	1.9	16	93	0	53	12	3	25	58	1.50
42916725--42916835	29	3.9	29	81	6	120	29	28	14	27	1.95
42920225--42920590	50	7.6	50	76	7	294	27	18	30	23	1.98
42920264--42920590	98	3.4	95	79	6	277	27	18	30	23	1.97
42932753--42932826	29	2.6	29	86	4	96	27	31	16	25	1.96
42947321--42947384	30	2.2	29	91	2	101	35	21	15	26	1.94
42953399--42953438	20	2.0	20	85	9	55	47	25	0	27	1.52
42961291--42961552	48	5.5	48	83	4	250	25	29	17	26	1.98
42961337--42961552	96	2.3	93	86	4	281	25	30	17	26	1.97
42970005--42970150	48	3.0	48	88	0	211	28	23	19	27	1.99
42972906--42973123	40	5.5	40	86	4	282	25	26	22	25	2.00
42981115--42981292	40	4.5	40	95	2	306	24	28	23	24	2.00
42983244--42983408	43	3.9	41	73	7	123	23	16	27	31	1.96
42984105--42984150	23	2.0	22	87	4	65	13	0	23	63	1.30
42984734--42984786	27	2.0	27	92	7	90	32	20	13	33	1.91
42990980--42991085	27	3.9	27	79	4	124	26	20	11	41	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43003270--43003375	42	2.5	44	78	6	110	26	17	22	33	1.96
43007436--43009363	641	3.0	641	98	0	3703	30	14	22	32	1.93
43012185--43012347	43	3.8	42	78	11	170	22	19	26	31	1.97
43016648--43016815	43	3.9	43	92	1	266	13	23	32	30	1.92
43016627--43016802	86	2.1	84	89	4	264	13	22	32	31	1.92
43017132--43017258	45	2.9	44	81	12	138	25	23	28	22	1.99
43022076--43022155	38	2.1	38	85	0	106	21	22	26	30	1.99
43022177--43022235	27	2.2	27	96	0	109	8	23	35	32	1.85
43022148--43022278	70	1.9	70	95	0	235	11	25	32	30	1.91
43022200--43022283	43	2.0	43	97	0	159	11	26	30	30	1.92
43022205--43022299	43	2.2	43	90	0	145	13	24	33	28	1.93
43022616--43022723	45	2.5	42	83	8	119	23	23	26	26	2.00
43029850--43029921	33	2.2	32	82	7	83	19	25	18	37	1.94
43038371--43038413	21	2.0	21	100	0	86	41	23	9	25	1.84
43046035--43046243	38	5.0	38	73	18	166	29	24	15	29	1.96
43046075--43046208	48	2.8	48	87	1	189	31	22	15	30	1.95
43053294--43053324	16	1.9	16	93	0	53	35	0	32	32	1.58
43066924--43067021	18	5.4	18	86	2	117	75	5	5	14	1.15
43066924--43067021	12	8.2	12	83	0	106	75	5	5	14	1.15
43066924--43067009	36	2.4	36	94	3	147	76	4	4	13	1.10
43068648--43068710	21	2.9	21	81	9	65	73	1	12	12	1.18
43085697--43086795	47	23.3	47	96	1	1850	27	31	10	31	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43086035--43086109	22	3.3	22	65	17	62	26	30	10	32	1.90
43094750--43094784	14	2.6	13	86	8	52	28	0	0	71	0.86
43106359--43106395	17	2.2	17	90	0	56	24	16	8	51	1.71
43108990--43109021	15	2.1	15	94	0	55	31	9	31	28	1.88
43110869--43111012	27	5.3	27	85	0	171	41	24	15	18	1.89
43112607--43112710	32	3.2	32	82	2	129	23	18	18	40	1.91
43112607--43112760	64	2.4	64	84	4	186	24	19	17	38	1.92
43112766--43112839	22	3.3	21	72	12	60	16	20	20	43	1.88
43121705--43121749	18	2.5	18	89	7	65	35	13	15	35	1.87
43121868--43122004	69	2.0	69	91	0	220	18	13	38	28	1.90
43121972--43122010	18	2.0	20	85	14	55	12	15	46	25	1.81
43121983--43122025	18	2.4	18	84	7	52	13	16	46	23	1.83
43129623--43129691	18	3.8	18	84	5	86	60	2	2	33	1.26
43129619--43129691	10	7.8	10	71	22	52	60	2	2	34	1.25
43132257--43132373	23	4.9	23	77	7	90	25	14	10	49	1.75
43132266--43132365	12	8.2	12	71	6	76	28	14	12	46	1.79
43132294--43132343	26	1.9	26	83	0	64	28	14	12	46	1.79
43139464--43139516	22	2.5	21	84	9	63	26	37	0	35	1.57
43142657--43142701	23	2.0	22	87	12	65	22	15	11	51	1.75
43142659--43142757	12	8.2	12	70	12	69	27	15	12	45	1.81
43142686--43142735	26	1.9	26	83	0	64	26	14	12	48	1.78
43142717--43142762	23	2.0	24	91	4	76	30	17	10	41	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43152018--43152192	63	2.8	61	79	2	188	23	22	27	26	1.99
43153438--43153478	16	2.6	16	88	3	57	24	17	2	56	1.53
43153782--43154049	89	3.0	89	97	0	500	44	14	2	38	1.59
43154442--43154547	39	2.7	40	76	5	108	42	19	18	18	1.90
43154614--43154927	41	7.8	40	76	10	214	21	19	26	33	1.97
43154651--43154715	33	2.0	33	93	0	112	15	18	33	32	1.92
43154683--43154926	82	3.0	81	80	4	256	20	19	26	34	1.96
43155099--43155158	7	8.7	7	75	10	52	16	0	38	45	1.48
43155230--43155270	21	2.0	21	85	0	55	21	0	24	53	1.46
43155279--43155333	14	3.9	14	75	2	56	14	0	34	50	1.43
43155643--43155675	14	2.4	14	95	5	59	48	0	0	51	1.00
43156708--43156787	31	2.6	31	95	0	142	18	15	21	45	1.86
43157617--43157644	12	2.3	12	100	0	56	32	7	10	50	1.64
43157763--43157787	10	2.5	10	100	0	50	16	0	8	76	1.02
43158975--43159072	43	2.3	43	87	0	133	23	15	30	30	1.95
43163350--43163581	41	5.7	41	88	3	324	18	20	28	32	1.96
43163370--43163581	81	2.6	82	89	3	338	17	21	29	30	1.97
43163900--43163960	22	2.7	24	78	12	67	24	1	31	42	1.64
43163925--43164013	7	12.6	7	71	2	52	22	3	28	46	1.68
43163932--43164015	35	2.4	36	83	2	98	22	3	28	45	1.69
43163973--43164075	14	6.9	14	73	12	71	24	0	37	36	1.62
43164042--43164088	21	2.2	22	88	3	69	21	0	46	31	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43163968--43164105	7	19.7	7	67	14	61	24	0	36	38	1.61
43164479--43164519	21	1.9	22	90	5	66	19	0	41	39	1.52
43167066--43167159	47	2.0	47	93	0	161	17	23	21	38	1.93
43171152--43171318	86	1.9	86	83	4	212	23	18	29	28	1.98
43171199--43171380	86	2.1	85	82	1	211	23	19	29	28	1.98
43171156--43171376	43	5.2	43	75	4	162	23	18	29	28	1.98
43174105--43174187	41	2.0	41	90	4	132	49	6	2	42	1.40
43178676--43178742	12	5.6	12	74	0	53	43	11	1	43	1.50
43178688--43178746	28	2.1	28	87	0	91	42	11	0	45	1.41
43183581--43183643	25	2.5	24	80	17	74	73	1	23	1	1.01

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205