genome.fa.s19.2.7.7.80.10.50.1000.160.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  61124829

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   

This is table  160  of  205  ( 24568 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47786264--47786310	24	2.0	24	86	0	67	48	29	21	0	1.50
47788737--47788773	18	2.0	19	89	5	58	35	13	2	48	1.57
47797862--47797894	18	1.9	18	88	11	52	33	0	12	54	1.37
47798012--47798055	19	2.3	19	92	0	70	36	27	9	27	1.87
47805276--47805338	32	2.0	32	81	9	76	33	9	15	41	1.80
47805452--47805580	43	3.0	43	82	8	163	26	17	24	31	1.97
47809090--47809123	15	2.2	15	94	5	59	23	2	0	73	0.97
47809591--47809650	10	6.5	10	70	22	51	43	0	1	55	1.10
47809575--47809693	20	6.2	20	69	20	76	40	1	3	54	1.27
47809577--47809687	35	3.0	36	83	11	127	42	1	3	52	1.29
47812188--47812217	15	1.9	16	93	6	53	66	3	0	30	1.07
47812505--47812539	18	1.9	18	88	0	52	22	17	0	60	1.37
47820384--47820412	3	9.7	3	100	0	58	65	0	34	0	0.93
47828044--47828214	60	2.8	59	79	6	162	39	18	21	21	1.93
47828479--47828533	21	2.5	22	85	5	76	7	10	21	60	1.55
47828533--47828563	11	2.8	11	95	0	53	29	0	0	70	0.87
47828533--47828565	14	2.4	14	90	5	50	27	0	0	72	0.85
47831623--47831850	105	2.1	104	80	13	234	41	4	6	47	1.49
47833661--47833709	22	2.3	21	79	10	55	40	2	4	53	1.32
47833738--47833791	9	5.9	9	79	12	56	40	1	1	55	1.21
47833660--47833911	111	2.2	113	89	4	373	36	2	3	57	1.30
47833851--47833906	20	2.8	20	78	2	60	35	1	1	60	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47833851--47833921	19	3.9	17	75	14	61	32	1	2	63	1.18
47837212--47837256	22	2.0	24	86	8	67	37	11	4	46	1.60
47838415--47838458	19	2.2	19	84	8	52	36	9	9	45	1.68
47839088--47839135	21	2.3	21	85	0	69	37	2	0	60	1.09
47839157--47839235	9	8.7	9	71	16	56	29	1	2	67	1.12
47839158--47839224	19	3.8	16	74	24	62	29	1	1	67	1.09
47842533--47842577	22	2.0	24	86	8	67	37	11	4	46	1.60
47843142--47843170	15	1.9	15	100	0	58	6	10	0	82	0.83
47843792--47843902	3	37.3	3	70	16	63	27	6	1	64	1.27
47844060--47844103	23	1.9	23	81	9	54	36	4	2	56	1.32
47844078--47844141	20	3.2	21	65	19	55	39	3	0	57	1.14
47844068--47844141	11	6.9	11	75	14	66	39	2	0	58	1.13
47844259--47844304	18	2.5	19	82	13	60	15	6	6	71	1.27
47846345--47846389	19	2.3	19	84	7	54	35	8	8	46	1.66
47847087--47847165	9	8.7	9	73	12	63	30	1	2	65	1.13
47847083--47847150	10	7.1	10	74	12	54	33	1	1	63	1.13
47850659--47850693	18	1.9	18	88	0	52	25	0	2	71	1.00
47853005--47853068	27	2.2	29	83	8	78	17	34	9	39	1.82
47872003--47872099	49	2.0	50	87	2	142	26	15	25	31	1.96
47885001--47885033	18	1.9	17	88	11	50	33	6	6	54	1.50
47885877--47885943	27	2.4	27	77	20	68	62	1	4	31	1.24
47885943--47885996	21	2.5	22	80	14	60	61	3	1	33	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47886539--47886614	9	8.7	9	75	15	52	31	2	2	63	1.22
47886582--47886613	16	2.0	16	93	0	55	21	0	3	75	0.95
47886716--47886797	29	2.7	30	69	10	69	26	7	24	41	1.81
47887123--47887284	81	2.0	81	95	0	288	22	22	14	41	1.89
47928828--47928914	11	8.3	11	65	19	51	24	29	2	43	1.66
47928828--47928877	22	2.3	22	89	6	75	24	32	2	42	1.66
47928839--47928938	51	2.0	51	88	4	148	26	27	2	45	1.65
47931109--47931186	40	2.0	40	82	10	97	23	26	26	23	2.00
47935515--47935545	16	1.9	16	93	0	53	70	3	9	16	1.26
47936862--47936890	2	14.5	2	100	0	58	51	0	0	48	1.00
47937248--47937546	23	12.7	24	67	14	149	41	16	17	24	1.90
47937288--47937559	47	5.8	47	89	3	271	41	16	16	25	1.89
47937321--47937560	47	5.1	47	93	1	410	42	16	17	24	1.89
47937321--47937560	93	2.6	93	91	0	408	42	16	17	24	1.89
47942756--47942817	24	2.5	25	77	15	67	17	24	24	33	1.96
47953266--47953292	14	1.9	14	100	0	54	14	11	7	66	1.43
47955134--47955171	19	2.0	19	94	0	67	36	7	26	28	1.84
47957258--47957295	19	2.0	19	94	0	67	36	7	26	28	1.84
47960954--47961091	42	3.3	42	81	10	147	42	15	16	24	1.88
47965077--47965139	12	4.8	13	74	14	58	44	3	1	50	1.27
47965449--47965491	22	2.0	22	90	0	68	9	13	27	48	1.73
47965563--47965875	85	3.7	83	85	6	364	30	20	21	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47965563--47965876	42	7.4	42	82	6	350	30	20	21	27	1.98
47966295--47966334	12	3.3	12	92	0	53	2	37	17	42	1.63
47966319--47966397	21	3.8	21	93	0	140	1	41	21	35	1.61
47966307--47966436	33	3.7	33	79	16	161	0	40	20	38	1.58
47966382--47966436	12	4.8	12	73	13	62	0	40	18	41	1.50
47976807--47976887	14	5.8	13	74	17	58	46	29	1	22	1.59
47976807--47976886	21	3.8	20	70	15	54	47	28	1	22	1.59
47977020--47977067	20	2.4	21	86	6	64	52	33	0	14	1.42
47977528--47977894	188	2.0	187	78	9	390	29	28	21	20	1.98
47977878--47978075	72	2.8	70	77	10	206	28	24	20	26	1.99
47981004--47981075	36	2.0	36	91	0	117	27	47	0	25	1.52
47983427--47983496	30	2.4	29	79	9	72	32	4	5	57	1.42
47984374--47984400	14	1.9	14	100	0	54	25	0	0	74	0.83
47984921--47984961	20	2.0	22	85	9	59	68	12	4	14	1.36
47988039--47988090	27	1.9	27	92	0	86	50	19	7	23	1.73
47990612--47990658	22	2.2	22	84	3	60	57	4	0	38	1.18
47995947--47996536	295	2.0	295	100	0	1180	38	17	19	24	1.93
47998661--47998703	10	4.2	10	80	13	52	72	0	6	20	1.08
47998674--47998731	17	3.5	17	81	4	75	79	0	5	15	0.90
47998679--47998733	21	2.5	21	77	14	58	78	0	5	16	0.93
47998674--47998732	8	7.2	8	75	17	50	79	0	5	15	0.89
48017694--48017723	14	2.1	14	93	0	51	16	36	30	16	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48022908--48023094	88	2.1	89	90	2	290	26	21	19	32	1.97
48023219--48023702	132	3.7	132	90	1	738	29	24	16	30	1.96
48023377--48023689	44	7.1	44	65	17	134	28	23	17	30	1.97
48023696--48024571	89	9.8	89	86	0	1097	23	22	24	29	1.99
48025895--48025982	11	7.8	11	74	13	72	3	20	0	76	0.93
48025895--48025983	17	5.2	17	81	10	85	3	20	0	76	0.93
48025895--48025957	6	10.7	6	78	10	67	3	19	0	77	0.90
48025905--48025994	17	5.4	17	73	21	50	2	22	0	75	0.91
48030694--48030718	13	1.9	13	100	0	50	68	0	8	24	1.16
48032773--48032826	27	2.0	28	85	3	74	46	1	9	42	1.46
48034837--48034891	13	4.3	13	76	17	53	52	10	3	32	1.54
48034837--48034922	26	3.5	24	76	10	77	53	12	2	31	1.51
48036444--48036485	7	6.3	7	91	5	61	16	2	0	80	0.81
48036444--48036483	13	3.1	13	86	13	64	15	2	0	82	0.77
48036447--48036483	6	5.8	6	90	6	56	13	2	0	83	0.74
48039111--48039154	3	14.7	3	100	0	88	31	0	0	68	0.90
48040772--48040815	3	14.7	3	100	0	88	31	0	0	68	0.90
48042726--48042755	15	2.0	15	93	0	51	23	26	13	36	1.92
48044859--48044904	24	1.9	24	86	0	65	78	4	8	8	1.09
48046131--48046457	88	3.7	88	93	0	564	25	26	23	23	2.00
48048109--48049435	87	15.2	87	90	2	1661	28	23	24	24	2.00
48051044--48051111	29	2.3	29	78	9	75	13	20	4	61	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48051119--48051162	23	1.9	23	86	9	63	34	4	0	61	1.16
48051161--48051189	3	9.7	3	100	0	58	34	0	31	34	1.58
48051377--48051411	3	11.7	3	93	0	61	28	0	2	68	1.04
48053813--48053854	7	6.3	7	91	5	61	16	2	0	80	0.81
48053813--48053852	13	3.1	13	86	13	64	15	2	0	82	0.77
48053816--48053852	6	5.8	6	90	6	56	13	2	0	83	0.74
48055728--48055761	14	2.4	14	95	0	59	38	41	5	14	1.70
48057439--48057493	28	2.0	28	88	0	83	60	9	16	14	1.59
48064928--48064959	15	2.1	16	94	5	57	71	0	21	6	1.07
48071136--48071182	23	2.0	24	83	4	60	23	27	4	44	1.72

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205