genome.fa.s19.2.7.7.80.10.50.1000.108.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  61124829

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   

This is table  108  of  205  ( 24568 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32109602--32109791	41	4.7	39	85	7	204	27	19	24	28	1.98
32109608--32109762	82	1.9	82	86	7	226	26	18	25	29	1.98
32110892--32110985	39	2.4	40	85	7	122	21	15	20	42	1.89
32113039--32113093	24	2.4	23	93	6	94	38	7	3	50	1.48
32116555--32116611	29	2.0	29	100	0	114	17	21	29	31	1.96
32117570--32117683	34	3.3	34	79	8	104	40	16	7	35	1.78
32117851--32118136	41	6.6	42	74	13	240	27	26	16	29	1.97
32117819--32118092	137	2.0	137	94	1	487	30	25	14	29	1.95
32117989--32118136	41	3.6	41	92	0	242	22	28	18	29	1.98
32118530--32118576	23	2.0	23	95	0	85	42	29	2	25	1.67
32126939--32127133	51	3.8	51	80	7	218	24	17	28	29	1.97
32137760--32138064	40	7.7	40	92	2	508	22	27	20	29	1.99
32137760--32138064	79	3.8	79	97	0	547	22	27	20	29	1.99
32140760--32140882	50	2.5	50	77	2	133	29	22	26	21	1.99
32151373--32151468	42	2.3	43	81	1	113	21	20	23	33	1.97
32153548--32153590	21	2.0	22	86	4	61	39	0	4	55	1.20
32153621--32153660	20	2.0	20	95	0	71	52	35	0	12	1.39
32154402--32154500	50	2.0	49	84	5	128	29	14	11	45	1.79
32157328--32157376	18	2.7	18	87	0	71	57	18	10	14	1.65
32161643--32161683	13	3.2	13	75	25	50	0	31	21	46	1.52
32172504--32172552	2	24.5	2	100	0	98	51	0	48	0	1.00
32178884--32178928	22	2.1	21	83	4	54	13	20	2	64	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32198543--32198579	13	2.8	13	91	0	56	51	16	0	32	1.45
32204042--32204112	35	2.0	35	100	0	142	25	5	39	29	1.78
32206672--32206793	42	3.2	41	64	33	108	39	5	6	48	1.53
32206695--32206806	30	3.3	30	68	29	91	37	5	6	50	1.50
32206672--32206824	72	2.1	72	97	0	288	39	6	6	47	1.56
32206971--32207019	21	2.4	21	81	15	59	40	6	0	53	1.26
32208026--32208396	92	4.0	92	98	0	708	21	8	19	50	1.74
32210065--32210177	44	2.6	42	81	17	142	23	19	27	29	1.98
32213194--32213219	13	2.0	13	100	0	52	30	15	30	23	1.95
32213493--32213602	23	4.8	23	79	0	94	39	22	16	21	1.92
32213493--32213606	46	2.5	46	82	0	129	37	23	16	21	1.93
32220681--32221211	47	11.2	47	93	2	846	30	8	30	30	1.87
32221289--32221445	77	2.0	78	95	1	280	20	21	26	31	1.98
32222652--32222807	85	1.8	85	98	0	303	36	10	20	32	1.86
32223574--32223619	20	2.3	19	85	14	58	26	15	15	43	1.85
32223580--32223622	20	2.0	22	91	8	72	27	13	13	44	1.83
32226646--32226872	113	2.0	111	94	1	373	35	11	19	33	1.88
32227715--32227749	16	2.1	17	89	5	54	34	0	2	62	1.10
32227684--32227726	7	6.0	7	89	5	59	44	4	0	51	1.22
32227702--32227751	15	3.3	15	76	18	50	40	0	2	58	1.10
32228041--32228072	17	1.9	17	93	6	57	56	9	0	34	1.32
32228121--32228157	7	5.0	7	93	6	56	56	0	0	43	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32228121--32228157	15	2.5	14	91	8	56	56	0	0	43	0.99
32229033--32229064	16	1.9	17	93	6	57	25	0	0	75	0.81
32229049--32229075	12	2.2	12	100	0	54	29	0	0	70	0.88
32229029--32229092	28	2.3	28	83	2	76	28	1	0	70	0.97
32229126--32229154	14	2.1	14	100	0	58	41	0	0	58	0.98
32229140--32229184	18	2.4	18	88	7	63	42	0	6	51	1.28
32232662--32232800	73	1.9	73	82	8	176	18	23	23	35	1.96
32236473--32236551	37	2.1	37	90	0	122	25	31	18	24	1.98
32236670--32237080	47	8.7	47	97	0	750	29	30	8	32	1.86
32248861--32248889	15	1.9	15	100	0	58	41	0	0	58	0.98
32249952--32250096	40	3.6	40	73	3	121	23	28	16	31	1.96
32252805--32252841	19	2.0	18	94	5	65	64	2	0	32	1.07
32254425--32254474	26	1.9	27	84	8	68	52	14	6	28	1.65
32257669--32257711	22	2.0	22	81	9	52	46	4	0	48	1.22
32261995--32262191	98	2.0	98	89	0	304	28	10	22	37	1.88
32263204--32263234	11	2.7	12	90	10	55	45	0	0	54	0.99
32266485--32266531	23	2.0	23	100	0	94	38	4	14	42	1.66
32267064--32267126	29	2.1	31	88	5	94	36	11	9	42	1.73
32267355--32267415	20	3.0	20	73	4	59	65	3	3	27	1.24
32274681--32274729	25	2.0	25	83	0	62	24	20	20	34	1.96
32274691--32274751	25	2.4	25	88	0	86	21	18	26	34	1.96
32280756--32280953	51	3.9	51	77	5	197	31	27	16	23	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32280396--32280875	245	2.0	245	98	0	924	34	25	16	24	1.95
32280755--32280947	101	1.9	102	84	3	264	31	26	17	24	1.97
32284981--32285068	25	3.6	25	78	4	81	21	23	20	34	1.97
32294379--32294416	19	2.0	19	89	0	58	52	5	10	31	1.58
32295176--32295474	31	9.7	31	87	1	388	28	9	18	44	1.80
32295188--32295474	123	2.3	122	87	2	405	28	9	18	43	1.80
32295165--32295474	92	3.4	92	88	2	408	28	8	18	44	1.79
32302865--32302964	47	2.1	49	84	3	132	23	30	19	28	1.98
32309869--32310121	35	6.9	35	72	16	172	22	16	16	43	1.87
32309940--32310059	41	3.0	40	68	22	117	23	15	15	45	1.85
32309904--32310059	78	2.0	78	93	0	267	23	15	16	45	1.84
32311169--32311207	20	2.0	20	85	10	53	15	12	0	71	1.14
32311790--32311859	21	3.2	21	80	8	70	15	31	24	28	1.96
32313299--32313342	16	2.5	18	89	10	65	40	0	0	59	0.98
32323745--32324462	359	2.0	359	99	0	1409	28	26	15	29	1.96
32329678--32329712	16	2.1	17	89	5	54	74	11	0	14	1.08
32345026--32345067	17	2.5	16	82	17	50	28	0	2	69	1.01
32350164--32350257	44	2.1	46	86	11	133	32	5	25	36	1.79
32350347--32350482	58	2.4	58	82	3	168	54	2	1	41	1.24
32354464--32354529	20	3.3	20	82	0	60	10	30	21	37	1.87
32364946--32364971	13	2.0	13	100	0	52	69	7	0	23	1.14
32367853--32368124	128	2.1	128	100	0	544	33	18	17	30	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32368549--32368627	13	6.1	13	75	5	52	40	18	3	36	1.69
32368725--32368782	30	1.9	30	89	0	89	41	1	6	50	1.39
32369347--32369376	3	10.0	3	100	0	60	66	0	0	33	0.92
32370053--32370097	19	2.5	17	82	10	63	46	2	2	48	1.26
32370055--32370094	18	2.2	18	90	4	62	45	2	2	50	1.28
32371586--32371644	20	2.8	20	74	7	55	28	0	6	64	1.19
32376533--32376586	27	2.0	27	100	0	108	44	7	25	22	1.79
32381185--32381255	32	2.3	31	82	7	81	21	19	40	18	1.91
32381652--32381689	16	2.5	15	91	8	60	21	0	50	28	1.49
32407379--32408000	31	20.3	29	72	9	214	41	20	9	27	1.83
32407386--32407807	153	2.7	154	75	8	333	42	20	8	27	1.81
32407337--32408069	184	4.0	184	91	1	1119	42	20	9	28	1.83
32412347--32412371	12	2.1	12	100	0	50	32	8	16	44	1.76
32412570--32412949	190	2.0	190	100	0	760	25	17	18	37	1.93
32413645--32413719	33	2.2	34	85	2	98	42	12	6	38	1.68
32417371--32417395	12	2.1	12	100	0	50	32	8	16	44	1.76
32421396--32421800	31	13.2	31	68	8	137	41	19	10	28	1.84
32421385--32421698	154	2.0	154	90	1	495	41	20	9	28	1.84
32421385--32421765	154	2.5	154	85	2	471	41	20	10	27	1.84
32421535--32421874	62	5.5	60	73	8	202	42	19	9	28	1.82
32424495--32424617	29	4.3	28	74	7	88	25	14	21	39	1.91
32425117--32425143	11	2.5	11	100	0	54	0	25	0	74	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32425108--32425145	10	3.8	10	83	10	51	0	23	0	76	0.79
32428259--32428327	34	2.0	34	97	0	129	31	13	40	14	1.84
32429777--32429851	23	3.3	21	73	15	69	42	17	13	26	1.86
32432051--32432200	45	3.4	44	84	5	182	41	18	19	21	1.91
32434009--32434054	21	2.3	20	78	14	51	45	17	6	30	1.73
32451681--32451801	25	4.7	25	77	11	111	26	28	16	28	1.97
32456499--32456545	20	2.4	19	85	7	58	68	2	2	27	1.13
32456491--32456535	20	2.2	20	84	7	56	68	2	0	28	1.01
32456499--32456545	19	2.3	21	79	17	55	68	2	2	27	1.13
32462190--32462216	11	2.5	11	100	0	54	55	0	0	44	0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205