genome.fa.s19.2.7.7.80.10.50.1000.155.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  61124829

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   

This is table  155  of  205  ( 24568 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46516680--46516881	59	3.6	59	78	11	201	30	1	20	47	1.59
46516706--46516887	34	5.2	35	77	16	162	30	1	20	46	1.61
46516871--46517098	48	4.8	48	91	3	363	36	2	13	47	1.55
46517029--46517139	30	3.6	30	75	19	102	36	0	15	47	1.52
46517014--46517163	64	2.3	63	85	7	196	36	0	15	47	1.50
46516680--46517156	48	9.9	50	79	13	306	34	1	16	47	1.57
46516966--46517182	112	1.9	111	87	5	321	35	1	14	47	1.55
46517078--46517182	48	2.2	48	84	6	133	37	0	13	48	1.49
46519583--46519668	40	2.3	36	80	13	93	32	5	9	52	1.57
46524906--46524935	16	1.9	15	93	6	51	26	3	0	70	1.03
46524402--46524959	160	3.5	156	74	13	497	30	11	7	50	1.65
46525477--46525530	18	3.1	17	76	13	56	0	25	0	74	0.83
46525452--46525550	22	4.2	24	70	20	68	0	31	0	68	0.90
46525498--46525622	10	12.5	10	67	19	66	0	32	0	67	0.91
46525503--46525569	14	4.6	14	81	7	89	0	29	0	70	0.88
46525457--46525619	44	3.7	44	84	8	176	0	31	0	68	0.90
46525457--46525561	23	4.6	24	74	12	105	0	31	0	68	0.90
46525461--46525622	38	4.2	39	77	14	140	0	33	0	66	0.92
46525564--46525637	11	5.8	13	72	24	52	1	37	0	60	1.05
46525541--46525596	28	2.0	28	82	6	69	0	33	0	66	0.92
46525468--46525619	82	1.9	82	85	10	213	0	31	0	68	0.90
46526572--46526668	7	13.4	7	69	14	54	36	42	4	17	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46526574--46526668	22	4.4	22	75	13	81	34	43	4	17	1.69
46526687--46526731	13	3.4	13	80	17	56	48	33	4	13	1.62
46526817--46526862	23	2.0	24	87	8	69	39	28	8	23	1.84
46527180--46527626	125	3.6	125	93	0	752	26	20	22	30	1.98
46529697--46529757	29	2.1	29	81	6	70	31	16	11	40	1.84
46536408--46536436	12	2.3	13	94	5	51	82	0	0	17	0.66
46548929--46548967	19	2.1	19	85	9	53	66	0	5	28	1.12
46552371--46552489	44	2.7	44	85	1	168	28	23	15	31	1.96
46552371--46552516	44	3.3	43	80	7	150	29	23	18	28	1.98
46552505--46552872	132	2.8	132	89	0	531	28	23	19	28	1.98
46552614--46552817	44	4.6	44	67	11	121	26	24	19	29	1.98
46552676--46552867	44	4.4	45	68	12	110	29	21	19	29	1.98
46552878--46553042	85	1.9	85	82	3	204	24	21	25	29	1.99
46554264--46554314	7	7.1	7	82	12	68	11	17	1	68	1.29
46554264--46554314	15	3.5	15	77	17	63	11	17	1	68	1.29
46554272--46554312	21	2.0	21	100	0	82	9	19	2	68	1.29
46555214--46555254	19	2.2	19	91	8	66	65	4	14	14	1.42
46559879--46559937	21	2.6	23	76	13	68	61	0	10	28	1.29
46560473--46560513	21	2.0	21	85	9	57	53	4	2	39	1.35
46568450--46568502	25	2.1	25	89	0	79	33	13	32	20	1.91
46571515--46571567	23	2.3	24	75	18	58	37	0	3	58	1.16
46571512--46571580	30	2.3	31	77	5	79	42	0	2	55	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46573617--46573732	48	2.4	48	84	2	153	37	4	42	15	1.67
46573763--46573816	8	6.9	8	72	19	51	46	0	0	53	1.00
46573772--46573826	22	2.5	22	94	2	94	54	0	0	45	0.99
46573761--46573816	17	3.6	16	76	13	62	46	0	0	53	1.00
46573872--46573959	26	3.3	26	75	6	104	45	1	1	52	1.15
46574114--46574159	16	2.9	16	83	0	56	28	15	6	50	1.69
46576839--46576885	13	3.1	15	76	17	53	14	31	38	14	1.87
46577122--46577173	21	2.5	21	80	0	59	23	38	19	19	1.93
46581484--46581579	35	2.8	33	78	12	102	37	2	1	59	1.16
46581530--46581564	17	2.1	17	89	5	54	42	2	0	54	1.15
46583598--46583674	14	5.0	15	71	20	52	42	14	9	33	1.77
46583614--46583653	20	2.0	20	90	0	62	50	12	10	27	1.72
46583602--46583668	34	1.9	35	90	3	109	46	13	8	31	1.74
46584683--46584716	16	2.1	16	100	0	68	38	17	14	29	1.90
46585218--46585306	43	2.1	43	89	0	133	34	16	11	37	1.85
46590644--46591077	213	2.0	213	95	0	787	32	17	20	29	1.96
46592978--46593021	3	14.7	3	90	9	72	68	2	0	29	1.02
46597352--46597416	3	21.7	3	100	0	130	67	0	0	32	0.91
46599799--46599836	17	2.4	17	86	8	53	34	2	2	60	1.24
46602606--46602686	30	2.9	27	76	18	76	34	3	1	60	1.22
46602732--46602801	25	2.8	24	72	18	63	32	2	0	64	1.08
46603217--46603253	19	1.9	19	88	0	56	40	0	8	51	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46603222--46603260	19	2.1	19	85	0	51	43	0	5	51	1.24
46604442--46604483	6	7.0	6	86	0	57	50	11	16	21	1.77
46605845--46605927	43	1.9	43	85	4	114	19	15	30	34	1.93
46605966--46606137	50	3.4	50	88	0	254	25	23	31	19	1.98
46608203--46608249	20	2.3	20	85	0	67	21	12	36	29	1.91
46608453--46609053	300	2.0	300	97	0	1139	34	19	18	28	1.95
46616091--46616148	30	1.9	30	89	0	89	41	3	24	31	1.71
46616362--46616391	13	2.3	13	94	0	51	33	3	13	50	1.58
46616486--46616678	50	3.8	50	90	0	305	25	23	31	20	1.98
46618790--46618825	13	2.8	13	87	4	56	50	41	0	8	1.33
46619141--46619235	40	2.4	40	89	0	136	32	22	17	27	1.96
46623309--46623344	12	3.0	12	87	0	54	52	8	2	36	1.46
46624126--46624165	21	1.9	21	94	0	71	27	20	30	22	1.98
46624656--46625414	6	126.5	6	100	0	1518	16	0	16	66	1.25
46625430--46625499	12	5.8	12	77	0	68	22	8	15	52	1.70
46625432--46625499	18	3.8	18	76	7	66	23	8	14	52	1.69
46625431--46625499	36	1.9	36	90	0	111	23	8	15	52	1.71
46627353--46627562	40	5.3	40	92	0	314	24	20	28	26	1.99
46627300--46627562	80	3.3	80	85	2	316	24	20	27	26	1.99
46627300--46627562	120	2.2	120	83	3	325	24	20	27	26	1.99
46627353--46627597	80	3.1	80	85	2	253	25	20	28	25	1.99
46635250--46635552	40	7.6	40	90	2	405	24	20	27	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46637124--46637153	15	2.0	15	93	0	51	20	6	30	43	1.77
46640652--46640716	28	2.3	29	75	19	66	55	7	3	33	1.44
46640746--46640813	3	22.3	3	84	3	91	61	4	1	32	1.24
46641988--46642023	17	2.1	17	90	10	56	5	5	44	44	1.50
46642484--46643420	46	20.4	46	90	0	1392	30	26	16	27	1.96
46644500--46644545	20	2.2	20	84	3	56	26	36	10	26	1.89
46644639--46644670	8	4.1	8	92	8	57	12	12	0	75	1.06
46644630--46644670	15	2.7	15	85	10	57	14	14	0	70	1.16
46645423--46645453	13	2.5	13	94	5	55	0	16	0	83	0.64
46645423--46645453	6	5.0	6	92	7	53	0	16	0	83	0.64
46646532--46646575	23	1.9	23	95	0	79	27	4	25	43	1.74
46649696--46649874	45	4.0	45	89	1	243	41	19	17	21	1.91
46655223--46655286	28	2.3	28	83	0	74	12	32	15	39	1.85
46655663--46655851	100	1.9	100	82	4	238	25	20	21	31	1.98
46655690--46655842	50	3.1	49	71	5	119	25	22	22	30	1.99
46655856--46656577	44	16.4	44	65	11	280	28	23	18	29	1.98
46655856--46656661	132	6.1	132	93	0	1272	28	23	19	29	1.98
46657910--46658021	42	2.6	42	92	1	179	25	26	16	31	1.97
46658105--46658136	11	2.9	11	90	0	55	0	12	0	87	0.54
46658105--46658137	6	5.8	6	86	13	52	0	12	0	87	0.53
46658103--46658139	17	2.2	17	95	4	67	0	10	0	89	0.49
46663033--46663068	15	2.5	15	86	4	56	52	5	5	36	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46663352--46663387	3	11.7	3	88	5	54	63	0	2	33	1.08
46664183--46664213	15	2.1	15	93	0	53	12	9	45	32	1.75
46667259--46667306	20	2.4	20	92	0	78	33	4	0	62	1.14
46668506--46668539	3	11.3	3	100	0	68	67	0	0	32	0.91
46669475--46669522	24	2.0	25	84	12	64	14	31	2	52	1.54
46673489--46673624	66	2.1	66	91	2	220	28	27	14	29	1.95
46683375--46683438	30	2.1	30	85	0	83	17	21	9	51	1.73
46687058--46687099	22	1.9	22	85	0	57	64	2	2	30	1.19
46688212--46688247	18	2.0	18	88	0	54	27	2	8	61	1.39
46696606--46696656	25	2.0	25	85	7	68	37	0	9	52	1.34

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205