genome.fa.s19.2.7.7.80.10.50.1000.30.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  61124829

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   

This is table  30  of  205  ( 24568 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9026958--9027002	20	2.3	20	84	3	65	48	6	2	42	1.41
9029734--9029800	31	2.2	31	83	5	82	41	7	14	35	1.75
9034342--9034387	24	2.0	23	91	4	74	50	6	4	39	1.48
9034355--9034417	33	1.9	33	83	6	83	47	6	3	42	1.44
9044593--9044621	7	4.1	7	100	0	58	72	27	0	0	0.85
9044630--9044904	137	2.0	136	98	0	532	34	20	17	27	1.95
9044879--9044969	43	2.1	43	93	2	157	36	16	23	24	1.94
9050009--9050063	28	2.0	28	96	0	101	30	18	21	29	1.97
9051275--9051312	16	2.3	16	95	4	67	28	7	10	52	1.64
9054663--9054717	22	2.4	23	82	11	69	40	5	10	43	1.63
9055543--9055627	37	2.3	37	87	0	125	40	17	14	28	1.88
9060924--9060974	24	2.1	24	100	0	102	33	15	15	35	1.90
9069132--9069185	27	2.0	28	85	3	74	20	9	27	42	1.82
9069172--9069236	27	2.4	27	87	2	96	9	16	43	30	1.80
9074293--9074889	134	4.5	134	82	1	687	31	17	13	37	1.88
9074842--9074925	36	2.3	36	91	0	132	29	17	17	34	1.94
9080264--9080303	20	2.0	20	90	0	62	50	12	10	27	1.72
9083091--9083131	17	2.4	18	80	8	50	29	9	0	60	1.28
9093580--9093642	32	2.0	32	87	0	90	36	25	12	25	1.91
9096317--9096709	133	3.0	133	91	1	646	25	24	19	30	1.98
9096726--9097052	89	3.7	89	84	4	374	25	23	22	28	1.99
9100754--9100828	28	3.0	26	78	19	88	65	12	0	22	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9101606--9102104	152	3.3	151	93	2	829	53	7	8	31	1.57
9104471--9104495	9	2.8	9	100	0	50	68	8	0	24	1.16
9104493--9104546	26	2.1	26	85	0	72	48	3	5	42	1.44
9109337--9109389	27	2.0	27	85	7	72	60	11	11	16	1.59
9113694--9113748	17	3.2	17	73	0	56	20	3	5	70	1.22
9127020--9127089	35	2.0	35	94	0	122	32	27	12	27	1.93
9132103--9132170	16	4.2	16	92	0	118	26	1	35	36	1.66
9132387--9132428	15	2.7	16	82	14	52	52	2	0	45	1.13
9132396--9132437	15	2.9	15	82	10	52	52	0	0	47	1.00
9132506--9132557	15	3.6	15	80	12	56	53	1	0	44	1.11
9132647--9132694	18	2.8	18	74	22	50	56	0	0	43	0.99
9132626--9132677	15	3.6	15	80	12	56	53	1	0	44	1.11
9132390--9132711	120	2.7	120	99	0	628	50	4	1	43	1.31
9134989--9135022	12	2.7	13	95	4	61	61	8	29	0	1.26
9135067--9135103	19	1.9	19	94	0	65	45	10	43	0	1.39
9145873--9145907	17	1.9	19	88	11	56	42	22	0	34	1.54
9146755--9146790	15	2.5	14	91	8	63	50	0	5	44	1.25
9148987--9149011	13	1.9	13	100	0	50	40	24	4	32	1.73
9149293--9149486	25	8.0	25	73	10	143	34	20	25	20	1.97
9149326--9149486	48	3.3	47	74	10	121	35	20	24	19	1.96
9155922--9155970	22	2.2	21	80	16	55	51	2	2	44	1.24
9162520--9162559	21	1.9	21	85	10	55	37	10	10	42	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9163032--9163107	26	2.9	25	79	11	71	64	2	1	31	1.15
9163033--9163086	28	1.9	28	84	0	72	64	3	0	31	1.11
9167550--9167576	6	4.5	6	100	0	54	85	0	0	14	0.61
9179849--9179895	5	9.4	5	95	0	85	57	0	2	40	1.11
9182569--9182613	23	2.0	24	86	8	67	51	8	4	35	1.54
9183149--9183219	31	2.3	29	81	9	79	47	8	5	38	1.57
9183149--9183221	30	2.4	32	84	6	89	47	8	5	38	1.56
9189141--9189221	29	2.8	29	79	7	85	27	14	12	45	1.81
9191481--9191575	11	8.9	11	71	18	67	23	29	3	44	1.69
9191481--9191575	22	4.5	22	70	20	85	23	29	3	44	1.69
9191543--9191583	11	3.7	12	90	6	52	24	24	4	46	1.72
9193420--9193462	18	2.4	18	88	0	59	18	27	9	44	1.80
9193719--9193764	21	2.2	21	88	0	65	28	41	26	4	1.74
9194025--9194790	229	3.3	230	93	1	1264	43	19	2	34	1.63
9194624--9194649	6	4.3	6	100	0	52	38	46	0	15	1.46
9195279--9195311	15	2.2	15	94	0	57	57	33	0	9	1.30
9195279--9195313	8	4.5	8	89	7	54	57	34	0	8	1.29
9198717--9198760	4	11.0	4	95	0	79	47	27	0	25	1.52
9200602--9200902	151	2.0	151	96	0	548	31	7	17	43	1.77
9202361--9202398	17	2.2	18	86	13	53	44	0	5	50	1.24
9204239--9204283	20	2.1	22	84	12	58	13	11	8	66	1.44
9204626--9204680	21	2.5	22	88	2	85	40	5	16	38	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9204915--9205081	35	4.8	35	86	4	239	18	23	17	40	1.91
9204916--9205081	69	2.4	69	89	3	253	18	23	18	39	1.92
9207892--9207936	20	2.1	22	84	12	58	13	11	8	66	1.44
9210025--9211602	789	2.0	789	98	0	3057	25	15	20	38	1.91
9211833--9211927	35	2.7	35	81	1	111	18	22	15	43	1.88
9213113--9213191	37	2.1	38	88	2	115	24	16	24	35	1.95
9213929--9213971	21	2.1	20	82	4	50	37	0	20	41	1.53
9216738--9216806	31	2.3	31	97	2	131	40	5	21	31	1.77
9216748--9216815	31	2.2	31	92	2	111	42	2	22	32	1.68
9224807--9224834	4	7.0	4	100	0	56	25	0	0	75	0.81
9229481--9229512	17	1.9	17	93	6	57	21	3	0	75	0.95
9229481--9229512	8	3.9	8	92	8	55	21	3	0	75	0.95
9229570--9229649	22	3.6	21	76	15	72	26	3	0	70	1.04
9229570--9229601	10	2.8	12	81	18	50	25	0	0	75	0.81
9229574--9229649	10	7.8	10	75	15	54	26	3	0	69	1.05
9229618--9229649	16	2.1	15	94	5	55	31	0	0	68	0.90
9229622--9229660	3	12.7	3	89	5	51	33	5	0	61	1.18
9231445--9231479	3	11.7	3	87	0	52	71	25	0	2	1.00
9232688--9232747	24	2.5	25	83	5	70	76	0	18	5	0.96
9232689--9232742	11	4.7	11	75	8	54	81	0	14	3	0.82
9233613--9234507	143	6.3	143	89	1	1246	30	19	21	27	1.98
9233613--9234465	285	3.0	286	88	0	1262	30	20	21	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9234338--9234447	44	2.5	45	80	1	114	29	22	20	28	1.98
9233613--9234507	428	2.1	427	87	2	1262	30	19	21	27	1.98
9234923--9234977	26	2.1	26	89	0	83	58	29	0	12	1.35
9236204--9236240	3	12.3	3	88	0	56	32	0	2	64	1.07
9237490--9237519	15	2.0	15	100	0	60	20	20	13	46	1.83
9238628--9238698	16	4.3	16	74	11	72	63	9	11	15	1.52
9242971--9243085	40	2.8	40	88	3	160	23	20	26	28	1.99
9243129--9243382	73	3.5	73	95	1	440	32	18	17	31	1.94
9243315--9243561	88	2.8	86	84	5	289	34	19	18	28	1.95
9243501--9243848	72	4.8	72	97	0	642	35	24	16	23	1.95
9243875--9244059	77	2.5	72	78	10	219	30	21	15	32	1.95
9243749--9243978	127	1.8	126	85	2	327	34	22	15	27	1.94
9243912--9244056	77	1.9	77	89	0	227	30	20	15	33	1.94
9243677--9244108	204	2.2	199	87	3	598	34	21	15	28	1.94
9244021--9244170	54	2.7	55	87	4	223	36	17	16	30	1.92
9244176--9244401	73	3.1	73	88	1	328	35	15	16	33	1.90
9244176--9244408	72	3.2	73	87	3	337	36	15	16	32	1.90
9263449--9263486	18	2.1	18	90	9	60	55	0	23	21	1.44
9268983--9269012	15	2.0	15	100	0	60	20	20	13	46	1.83
9273313--9273427	57	2.0	59	80	13	132	48	4	1	45	1.32
9273456--9273527	33	2.3	31	82	4	81	48	2	6	41	1.44
9277798--9277873	39	1.9	39	97	0	143	23	9	26	40	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9278083--9278258	39	4.5	39	82	3	185	17	21	28	32	1.96
9278083--9278258	78	2.2	79	85	5	223	17	21	28	32	1.96
9289461--9289518	31	1.9	31	86	6	84	51	0	17	31	1.45
9300896--9300927	6	5.3	6	96	0	55	18	0	0	81	0.70
9301256--9301510	26	9.8	25	68	13	108	29	7	3	60	1.40
9301353--9301412	28	2.3	27	81	13	72	33	8	0	58	1.28
9301338--9301512	52	3.5	50	75	12	126	29	7	3	60	1.41
9301431--9301510	27	3.0	25	78	12	72	27	6	2	63	1.31
9301431--9301537	50	2.1	51	82	6	128	27	8	3	60	1.42
9302674--9302735	21	3.0	22	79	15	69	16	17	17	48	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205