genome.fa.s19.2.7.7.80.10.50.1000.124.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  61124829

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   

This is table  124  of  205  ( 24568 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37171609--37172163	282	2.0	280	96	0	1029	33	18	14	32	1.92
37176119--37176171	7	7.4	7	78	4	61	35	0	3	60	1.15
37176119--37176198	39	2.1	36	90	6	124	32	0	6	61	1.21
37177659--37178316	120	5.5	120	97	0	1217	43	2	5	49	1.38
37177913--37177958	16	2.9	16	78	12	51	45	0	2	52	1.13
37178057--37178254	66	3.2	66	69	19	206	43	2	5	48	1.39
37178153--37178198	16	2.9	16	78	12	51	45	0	2	52	1.13
37178528--37178565	16	2.4	16	90	0	67	26	34	2	36	1.71
37188845--37188876	14	2.3	15	89	10	50	43	6	0	50	1.27
37203258--37203378	61	2.0	61	100	0	242	46	9	21	23	1.79
37210230--37210254	2	12.5	2	100	0	50	0	48	0	52	1.00
37213079--37213120	22	2.0	22	85	4	59	14	14	38	33	1.86
37213049--37213225	71	2.5	70	79	7	178	19	18	26	36	1.94
37216732--37216848	62	1.9	61	82	5	148	48	5	4	41	1.45
37218427--37218457	16	1.9	16	93	0	53	70	9	9	9	1.33
37220843--37220938	35	2.7	35	76	9	88	26	19	20	33	1.97
37224349--37224395	22	2.0	24	88	8	71	23	8	0	68	1.17
37227971--37228050	34	2.4	34	85	4	108	31	35	12	21	1.90
37228818--37228874	29	2.0	29	100	0	114	66	14	1	17	1.33
37236296--37236397	26	3.9	26	84	0	132	18	20	23	37	1.94
37236296--37236397	52	2.0	52	88	0	150	18	20	23	37	1.94
37236498--37236562	27	2.4	27	82	7	78	26	21	21	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37237228--37237291	28	2.3	28	89	2	94	31	21	20	26	1.98
37237239--37237293	28	2.0	28	96	0	101	25	23	23	27	2.00
37237396--37237475	26	3.1	26	76	7	81	33	20	21	25	1.97
37237644--37238012	27	13.7	27	84	6	385	19	18	18	44	1.87
37244428--37244528	34	3.1	34	73	16	97	30	22	20	25	1.98
37244456--37244527	28	2.5	28	95	2	126	30	23	20	25	1.99
37244635--37244703	26	2.7	26	90	0	102	39	26	18	15	1.91
37244902--37245268	27	13.6	27	81	1	335	18	17	18	45	1.86
37250267--37250307	21	2.0	21	85	0	55	36	24	9	29	1.87
37252839--37252966	39	3.3	39	88	3	168	29	23	14	32	1.95
37261419--37261595	89	2.0	90	96	1	329	36	12	12	37	1.83
37264649--37264729	18	4.6	17	69	23	60	49	11	3	35	1.56
37267973--37268006	18	1.9	18	88	5	52	32	20	11	35	1.89
37268270--37268342	21	3.6	19	78	10	65	49	0	0	50	1.00
37268559--37268591	13	2.6	13	90	4	50	39	24	6	30	1.79
37268594--37268627	13	2.6	13	90	0	50	23	35	5	35	1.79
37277768--37277811	20	2.3	19	81	14	54	52	0	2	45	1.13
37279133--37279181	19	2.6	18	81	15	55	63	4	0	32	1.13
37279719--37279776	29	2.0	28	83	9	73	51	5	1	41	1.34
37279762--37279797	19	1.9	19	88	5	56	44	5	2	47	1.41
37283148--37283221	22	3.4	21	74	9	67	12	28	16	43	1.83
37283148--37283231	44	1.9	44	82	0	105	14	28	15	41	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37284003--37284069	30	2.2	30	86	0	89	23	17	23	34	1.96
37286887--37286946	30	2.0	31	83	3	77	21	33	1	43	1.63
37287698--37287728	5	6.2	5	100	0	62	19	19	19	41	1.90
37292558--37292886	50	6.5	50	80	4	329	27	22	27	22	1.99
37292558--37292886	100	3.2	100	87	4	446	27	22	27	22	1.99
37292605--37292938	50	6.7	49	78	6	307	29	22	26	21	1.99
37299330--37299593	40	6.7	40	88	5	360	25	21	27	25	1.99
37299330--37299626	119	2.5	118	81	9	338	26	21	27	24	1.99
37303416--37303471	7	7.5	8	72	20	50	44	0	25	30	1.54
37306916--37307090	96	1.8	96	85	4	246	32	12	20	35	1.89
37315710--37315767	30	1.9	30	89	6	91	27	18	20	32	1.97
37316252--37316803	278	2.0	278	98	0	1077	32	19	13	34	1.90
37318257--37318320	32	2.0	32	93	0	110	35	17	7	39	1.78
37321848--37321906	29	2.0	31	83	6	77	61	3	8	27	1.41
37322009--37322370	180	2.0	180	95	1	654	40	16	12	30	1.85
37323991--37324049	20	2.9	19	77	10	55	52	8	1	37	1.42
37324032--37324086	18	3.0	19	76	7	51	50	3	0	45	1.19
37331405--37331562	35	4.5	35	88	0	217	23	22	27	26	1.99
37336935--37337062	29	4.4	29	92	2	195	36	10	26	25	1.89
37337050--37337220	29	5.9	28	73	8	110	37	13	26	22	1.91
37337044--37337207	58	2.8	57	74	11	145	37	12	27	22	1.90
37337042--37337205	87	1.9	87	83	5	215	37	12	26	23	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37340323--37340368	21	2.2	21	84	0	56	15	36	23	23	1.93
37341181--37341253	13	5.5	13	76	9	76	34	19	1	45	1.59
37341183--37341253	27	2.7	27	78	10	74	35	19	1	43	1.60
37346067--37346328	138	1.9	138	79	6	298	32	25	20	22	1.98
37355233--37355268	19	1.9	18	88	5	54	58	0	11	30	1.33
37368091--37368613	261	2.0	260	99	0	1028	27	23	13	34	1.93
37369477--37369606	58	2.2	56	82	5	143	23	28	11	36	1.89
37375880--37375917	11	3.5	11	96	0	67	34	15	7	42	1.76
37376207--37376270	24	2.6	24	83	14	69	65	0	32	1	1.02
37376211--37376276	25	2.6	25	81	13	73	69	0	28	1	0.97
37376422--37376456	17	2.0	17	88	5	52	20	5	0	74	1.02
37377549--37377584	15	2.5	14	86	8	54	5	13	0	80	0.88
37379776--37379942	87	1.9	86	84	3	219	37	25	12	23	1.90
37401378--37401405	14	2.0	14	100	0	56	35	7	0	57	1.26
37401418--37401448	13	2.4	13	94	0	53	51	0	3	45	1.17
37407360--37407417	28	2.0	28	80	9	64	18	12	12	56	1.65
37408104--37408128	12	2.1	12	100	0	50	48	0	8	44	1.32
37411863--37411940	15	5.2	15	70	11	70	43	7	23	25	1.80
37411856--37411940	30	2.8	30	96	0	152	44	7	23	24	1.78
37414724--37414857	52	2.7	49	83	10	173	42	8	0	48	1.38
37414806--37414979	94	1.9	94	93	0	303	40	8	4	47	1.52
37418486--37418602	50	2.3	52	81	7	141	40	11	13	34	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37422995--37423072	29	2.7	28	84	11	104	25	15	30	28	1.96
37423025--37423352	174	1.9	174	97	0	620	29	14	24	30	1.95
37429814--37429866	27	2.0	27	82	10	65	43	16	1	37	1.60
37433728--37433826	30	3.3	30	78	0	90	18	31	27	23	1.97
37436313--37436354	22	1.9	22	95	0	75	45	0	9	45	1.36
37436335--37436579	69	3.5	69	82	8	282	41	4	17	36	1.70
37436452--37436598	76	1.9	75	84	4	197	39	6	14	39	1.72
37436753--37436809	29	2.0	29	89	0	87	49	3	10	36	1.55
37438906--37439038	61	2.2	59	84	9	171	37	12	28	21	1.89
37449122--37449371	125	2.0	122	92	2	419	26	12	15	45	1.82
37455099--37455283	101	1.8	102	85	3	266	24	17	26	31	1.97
37455096--37455285	51	3.8	49	80	4	193	23	17	27	31	1.97
37455205--37455285	26	3.2	26	67	28	73	20	14	29	34	1.93
37455254--37455467	107	2.0	107	99	0	419	26	16	25	31	1.97
37455616--37455647	16	2.0	16	93	0	55	59	0	15	25	1.36
37458377--37458470	48	2.0	48	85	4	127	25	13	26	34	1.94
37461159--37461190	10	3.4	10	87	12	50	65	0	28	6	1.16
37461299--37461493	51	3.8	52	78	3	200	24	18	27	29	1.98
37461305--37461493	102	1.9	101	86	3	272	24	17	26	30	1.98
37465021--37465060	20	2.1	19	90	4	62	22	0	2	75	0.93
37465999--37466095	48	2.0	48	100	0	194	29	16	16	37	1.91
37472883--37473006	62	2.0	61	88	1	185	36	20	18	24	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37479848--37479957	32	3.4	32	83	0	139	18	39	22	20	1.93
37480776--37480880	52	2.0	52	100	0	210	43	22	7	25	1.80
37481744--37481790	24	1.9	24	83	12	60	31	6	6	55	1.51
37493149--37493345	42	4.7	42	80	6	215	18	17	26	37	1.93
37493149--37493345	86	2.4	84	79	9	222	18	17	26	37	1.93
37493903--37493937	18	1.9	18	88	0	52	5	14	2	77	1.07
37494107--37494203	45	2.1	46	88	5	144	51	1	6	41	1.34
37494248--37494528	150	1.8	152	91	4	469	43	4	10	41	1.60
37495147--37495191	20	2.2	20	84	7	56	17	6	4	71	1.25
37502699--37502739	21	2.0	21	86	9	59	58	0	19	21	1.39

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205