genome.fa.s19.2.7.7.80.10.50.1000.14.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  61124829

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   

This is table  14  of  205  ( 24568 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4306745--4306811	18	3.6	17	72	20	53	38	1	4	55	1.29
4306958--4307063	44	2.5	41	75	18	117	33	31	6	28	1.83
4306971--4307063	44	2.1	46	89	4	145	35	31	6	26	1.82
4307045--4307093	16	3.1	16	84	0	71	22	30	6	40	1.78
4313808--4313891	24	3.5	24	82	11	100	40	22	21	15	1.91
4313808--4313877	24	2.9	24	89	2	104	40	22	21	15	1.91
4314938--4314963	12	2.2	12	100	0	52	15	23	0	61	1.33
4317029--4317130	52	2.0	52	98	0	195	30	8	24	36	1.86
4335482--4335563	41	2.0	41	97	0	155	40	0	6	53	1.26
4341045--4341074	6	5.0	6	95	0	51	50	3	0	46	1.18
4351372--4351446	30	2.4	32	84	10	102	44	8	8	40	1.63
4351432--4351547	30	3.8	31	70	7	78	45	16	6	31	1.71
4355178--4355244	34	2.0	34	85	5	91	46	7	22	23	1.77
4355446--4355604	51	3.1	52	87	2	221	52	8	14	24	1.70
4355855--4355938	42	1.9	45	88	7	129	3	39	17	39	1.67
4356709--4356742	18	2.0	16	88	11	50	44	0	8	47	1.34
4365858--4365919	22	2.8	24	73	11	60	48	4	1	45	1.33
4367900--4367932	15	2.2	16	89	10	52	33	9	0	57	1.30
4372070--4372107	3	13.0	3	83	5	51	28	31	5	34	1.80
4373943--4374003	21	2.9	21	82	4	70	37	40	14	6	1.72
4374173--4374241	24	2.9	23	74	18	61	20	8	5	65	1.41
4374173--4374234	24	2.7	23	75	12	63	20	9	6	62	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4379609--4379648	22	1.9	20	90	10	62	25	2	2	70	1.13
4379971--4380001	16	1.9	16	93	0	53	32	6	12	48	1.67
4380976--4381025	14	3.6	14	71	12	50	26	4	2	68	1.18
4383873--4383928	27	2.1	27	82	0	67	14	23	16	46	1.83
4385146--4385180	5	7.0	5	93	0	61	62	0	37	0	0.95
4389097--4389137	21	2.0	21	85	0	55	31	0	21	46	1.52
4390575--4390757	86	2.1	86	86	1	258	41	18	8	31	1.80
4390952--4391033	18	4.4	19	76	11	89	39	13	1	46	1.51
4390952--4391033	37	2.2	37	97	0	155	39	13	1	46	1.51
4391678--4391790	61	1.9	59	82	12	142	29	15	17	38	1.90
4392023--4392082	30	2.0	31	90	3	95	20	38	0	41	1.52
4392829--4392880	27	1.9	27	96	0	95	13	32	23	30	1.93
4392940--4393002	27	2.4	27	91	2	110	49	0	7	42	1.32
4394865--4394931	28	2.3	29	75	12	75	55	8	1	34	1.40
4394915--4394968	24	2.2	24	81	15	67	57	5	3	33	1.40
4402773--4402866	30	3.1	30	79	0	107	26	18	21	34	1.96
4415262--4415301	2	20.0	2	100	0	80	50	0	50	0	1.00
4422502--4422538	2	18.5	2	100	0	74	51	48	0	0	1.00
4423218--4423550	166	2.0	166	97	0	621	36	22	9	30	1.87
4426408--4426464	29	1.9	30	86	10	82	50	17	3	28	1.62
4435376--4435415	9	4.4	9	96	0	71	42	22	10	25	1.84
4442571--4442625	13	4.2	13	75	11	58	65	1	0	32	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4442871--4442913	17	2.4	19	80	7	54	65	0	2	32	1.06
4443581--4443738	79	2.0	79	93	0	271	43	3	16	37	1.64
4445642--4445668	14	1.9	14	100	0	54	37	0	3	59	1.15
4453468--4453495	14	2.0	14	100	0	56	35	7	0	57	1.26
4453469--4453503	14	2.4	14	90	4	52	40	5	2	51	1.40
4454451--4454491	20	2.0	20	100	0	82	41	4	24	29	1.75
4455041--4455065	13	1.9	13	100	0	50	52	8	8	32	1.60
4459193--4459242	18	2.6	19	76	14	50	8	32	2	58	1.39
4461874--4461908	7	5.0	7	96	0	52	20	0	0	80	0.72
4461874--4461908	15	2.4	14	90	4	52	20	0	0	80	0.72
4464575--4464609	13	2.8	12	83	8	52	34	2	0	62	1.10
4465006--4465046	21	2.0	21	90	0	64	12	9	12	65	1.46
4466951--4467008	23	2.5	23	76	20	59	67	3	3	25	1.22
4467351--4467392	22	2.0	22	90	4	68	19	7	0	73	1.05
4470139--4470171	15	2.2	15	94	0	57	36	0	0	63	0.95
4470760--4470821	29	2.1	31	84	6	83	50	11	3	35	1.55
4485956--4486119	86	1.9	86	93	0	283	18	23	13	44	1.85
4502864--4502898	18	1.9	18	88	0	52	2	11	2	82	0.88
4507072--4507112	21	2.0	21	95	0	73	26	21	19	31	1.97
4518709--4518760	20	2.6	21	82	14	65	36	0	5	57	1.23
4519722--4519749	13	2.2	13	100	0	56	32	7	39	21	1.80
4519961--4520006	24	1.9	24	86	0	65	52	2	0	45	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4532577--4532704	24	5.2	26	72	12	92	35	21	26	17	1.95
4536285--4536424	46	3.0	46	92	0	235	35	8	27	29	1.86
4539519--4539553	17	2.1	17	89	10	54	57	2	0	40	1.14
4540858--4540897	3	13.0	3	89	5	62	65	0	2	32	1.06
4548209--4548272	6	10.7	6	100	0	128	17	0	0	82	0.66
4548201--4548303	6	15.3	7	79	8	67	23	0	1	74	0.91
4548200--4548305	24	4.5	24	82	4	110	23	0	1	74	0.92
4549480--4549525	21	2.2	21	100	0	92	26	21	6	45	1.76
4562556--4562592	14	2.5	14	91	8	56	59	0	40	0	0.97
4562553--4562602	20	2.8	17	77	16	55	64	0	36	0	0.94
4562762--4562848	22	4.2	21	82	11	99	31	0	11	57	1.34
4562786--4562842	19	2.9	19	86	2	78	33	0	14	52	1.41
4562929--4563031	19	4.8	19	71	22	71	30	2	14	52	1.56
4562929--4563194	49	5.5	49	90	4	407	31	1	13	53	1.50
4562929--4563240	97	3.2	97	86	5	404	31	1	14	53	1.50
4563054--4563198	27	5.7	27	80	15	184	32	1	12	53	1.47
4562929--4563193	146	1.8	144	92	3	451	31	1	12	53	1.49
4563394--4563467	38	1.9	38	97	0	139	54	4	2	39	1.34
4563578--4563619	16	2.7	15	85	7	57	38	2	2	57	1.25
4566790--4566834	22	2.1	21	91	4	72	0	33	2	64	1.06
4568825--4568867	21	2.0	22	82	13	54	37	20	13	27	1.91
4582329--4582393	31	2.1	31	88	5	96	35	10	7	46	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4597453--4597488	17	2.1	17	89	0	54	50	0	11	38	1.38
4624423--4624689	132	2.0	132	97	0	498	30	17	12	38	1.88
4624754--4624782	14	2.0	15	93	6	51	6	0	6	86	0.72
4640755--4640816	22	2.7	24	82	9	76	48	1	1	48	1.21
4640792--4640831	16	2.5	16	91	0	62	47	2	7	42	1.45
4640820--4640962	68	2.1	67	93	2	252	41	4	9	44	1.57
4640904--4640931	9	3.1	9	100	0	56	32	0	10	57	1.33
4643233--4643265	15	2.2	15	94	0	57	63	0	0	36	0.95
4643454--4643515	29	2.1	31	84	6	83	35	3	11	50	1.55
4646393--4646486	29	3.2	29	98	0	179	34	18	15	31	1.92
4652092--4652506	31	13.5	30	87	3	487	29	7	16	45	1.76
4652092--4652506	92	4.5	92	89	0	580	29	7	16	45	1.76
4652092--4652506	123	3.4	123	88	3	604	29	7	16	45	1.76
4658458--4658616	33	4.8	32	68	11	95	27	22	15	33	1.95
4658447--4658668	101	2.2	101	100	0	444	26	23	16	33	1.96
4658503--4658650	33	4.4	33	67	14	104	27	22	14	34	1.94
4659600--4659631	11	2.8	11	95	4	55	56	0	3	40	1.15
4665242--4665306	32	2.1	32	82	2	78	33	4	12	49	1.61
4666193--4666258	28	2.4	27	80	7	69	45	7	4	42	1.53
4666278--4666318	13	3.1	14	86	10	59	34	4	19	41	1.73
4668421--4668491	34	2.1	34	94	0	124	57	1	35	5	1.31
4668851--4668901	13	3.6	14	82	12	52	43	0	0	56	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4669085--4669163	29	2.7	29	84	0	104	26	13	7	51	1.68
4672191--4672254	30	2.1	30	85	2	83	26	20	7	45	1.78
4672581--4672626	20	2.2	21	88	7	67	30	0	0	69	0.89
4677795--4678040	126	2.0	126	99	0	483	39	17	18	24	1.91
4686287--4686324	14	2.7	15	88	8	53	50	2	5	42	1.39
4689588--4689668	36	2.3	36	93	2	137	53	3	4	38	1.41
4691157--4691304	50	2.8	53	82	6	167	25	26	20	28	1.99
4692622--4692647	10	2.6	10	100	0	52	57	23	0	19	1.40
4694613--4694671	15	4.2	14	72	23	52	13	8	0	77	0.97
4694641--4694683	18	2.3	20	84	15	65	9	13	0	76	1.01

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205