genome.fa.s19.2.7.7.80.10.50.1000.195.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  61124829

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   

This is table  195  of  205  ( 24568 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57795151--57795250	48	2.1	48	96	0	182	28	25	19	28	1.98
57806070--57806097	5	5.6	5	100	0	56	82	17	0	0	0.68
57807141--57807897	302	2.5	300	84	3	941	32	12	10	44	1.77
57813423--57813508	37	2.3	36	76	11	86	48	17	4	29	1.67
57814878--57814915	18	2.1	18	100	0	76	23	21	23	31	1.98
57815942--57816054	42	2.7	42	90	0	172	21	24	35	18	1.96
57819365--57819404	21	1.9	21	85	10	55	30	2	0	67	1.04
57819364--57819429	29	2.3	29	79	12	73	33	1	3	62	1.20
57819730--57819768	14	2.8	13	85	11	51	53	0	2	43	1.14
57822521--57822650	64	2.0	64	95	0	233	29	11	21	37	1.89
57823522--57823562	20	2.0	20	100	0	82	43	14	14	26	1.84
57830842--57830879	20	2.0	20	89	5	60	50	5	0	44	1.24
57842464--57842565	51	2.0	51	100	0	204	35	7	23	33	1.84
57842478--57842558	25	3.2	25	63	16	67	38	7	22	32	1.82
57842634--57842658	13	1.9	13	100	0	50	36	0	8	56	1.29
57846618--57846740	43	2.9	43	93	0	201	24	29	17	29	1.97
57846902--57846940	20	1.9	20	84	5	51	61	0	2	35	1.10
57854946--57854975	15	2.0	15	93	0	51	33	3	0	63	1.11
57855102--57855165	21	3.0	21	74	0	56	46	31	1	20	1.60
57855245--57855320	21	3.6	22	73	16	63	51	31	0	17	1.45
57855245--57855287	22	2.0	21	90	4	68	51	30	0	18	1.47
57855882--57856418	211	2.5	213	85	3	708	23	17	25	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57859687--57859845	41	3.9	40	78	4	122	21	17	25	35	1.95
57861693--57861746	5	10.0	5	77	15	54	40	1	1	55	1.21
57863369--57863419	27	1.9	26	84	11	68	45	5	13	35	1.68
57868679--57868721	20	2.2	20	95	0	77	39	2	0	58	1.11
57873152--57873203	10	5.0	10	79	9	59	50	0	1	48	1.12
57873128--57873206	32	2.5	32	91	2	124	53	0	1	45	1.08
57873448--57873499	26	1.9	27	84	7	70	19	1	11	67	1.31
57874107--57874165	29	2.0	29	96	0	109	25	27	15	32	1.95
57876914--57876965	10	5.0	10	79	9	59	50	0	1	48	1.12
57876890--57876968	32	2.5	32	91	2	124	53	0	1	45	1.08
57877210--57877261	26	1.9	27	84	7	70	19	1	11	67	1.31
57881496--57881536	20	2.0	20	85	4	55	70	2	9	17	1.25
57888515--57888558	21	2.1	21	83	8	54	27	11	15	45	1.81
57888776--57888925	41	3.7	41	77	1	140	25	32	19	22	1.97
57889982--57890031	14	3.5	13	79	15	55	78	12	0	10	0.98
57889982--57890020	19	2.1	19	85	0	51	79	12	0	7	0.93
57901197--57901255	15	3.7	16	75	11	50	72	1	1	23	1.02
57903495--57904137	321	2.0	320	92	2	1067	35	25	13	25	1.92
57907012--57907051	21	2.0	20	85	5	53	55	15	2	27	1.53
57913735--57913789	27	2.0	27	100	0	110	38	25	7	29	1.83
57918557--57918617	32	1.9	32	83	12	81	44	4	1	49	1.33
57918789--57918833	16	2.8	15	83	12	54	15	17	0	66	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57929315--57929403	44	2.0	44	97	0	169	28	10	22	39	1.86
57933368--57933409	13	2.9	14	80	13	50	54	0	0	45	0.99
57933372--57933408	16	2.3	16	86	13	58	59	0	0	40	0.97
57933435--57933492	18	3.2	18	74	13	55	53	5	0	41	1.23
57933803--57933886	9	9.6	9	74	7	66	34	0	15	50	1.45
57933793--57933888	43	2.2	43	81	7	106	34	0	14	51	1.43
57933759--57933903	61	2.3	64	76	19	178	33	2	13	49	1.57
57933937--57933963	13	2.1	13	100	0	54	37	11	0	51	1.37
57935808--57935836	9	3.0	10	90	10	51	82	6	0	10	0.83
57936223--57936281	31	1.9	31	86	6	84	59	0	5	35	1.20
57937891--57938001	44	2.5	44	76	11	109	24	20	22	32	1.98
57937974--57938308	44	7.8	43	72	16	230	28	22	18	30	1.98
57938338--57938522	50	3.7	50	69	7	142	22	27	21	29	1.99
57939660--57939708	25	1.9	26	91	4	82	59	8	14	18	1.59
57941660--57941899	27	8.9	27	85	4	283	19	18	20	40	1.91
57941660--57941899	81	3.0	80	87	4	315	19	18	20	40	1.91
57947105--57947144	18	2.2	19	91	8	66	12	7	0	80	0.91
57947105--57947143	16	2.2	19	86	13	57	12	7	0	79	0.93
57952645--57952705	11	5.9	11	73	17	51	72	6	8	13	1.28
57952645--57952688	22	2.1	20	87	8	61	75	9	4	11	1.19
57962004--57962048	22	2.0	22	91	0	72	68	0	4	26	1.08
57962016--57962067	20	2.8	18	81	16	54	61	0	3	34	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57963851--57964244	128	3.1	128	92	1	664	34	20	11	33	1.89
57964807--57964840	14	2.4	14	100	0	68	55	14	0	29	1.40
57970338--57970378	21	2.0	21	81	18	50	31	19	26	21	1.97
57974613--57974643	15	2.1	15	93	0	53	25	6	29	38	1.81
57979393--57980188	110	7.6	101	81	10	863	58	14	1	25	1.44
57979393--57980188	211	3.8	205	84	7	985	58	14	1	25	1.44
57979481--57980188	110	6.6	108	83	8	891	58	14	1	25	1.43
57979592--57980188	101	5.7	100	82	10	662	58	14	1	25	1.43
57979298--57980188	314	2.8	314	92	3	1412	58	14	1	25	1.43
57981309--57981477	57	2.9	57	81	0	194	36	19	14	29	1.92
57982150--57982201	17	2.9	17	85	5	59	48	0	0	51	1.00
57982150--57982198	21	2.5	20	86	6	64	51	0	0	48	1.00
57993207--57993232	12	2.2	12	100	0	52	38	0	7	53	1.30
57993407--57993431	11	2.3	11	100	0	50	44	8	8	40	1.63
57996928--57996979	24	2.2	24	85	0	68	53	9	3	32	1.51
58000165--58000217	22	2.5	22	78	3	63	41	28	20	9	1.83
58002880--58002910	9	3.4	9	90	0	53	25	12	22	38	1.90
58002961--58002997	9	4.1	9	92	0	65	45	13	10	29	1.77
58003916--58003956	5	8.2	5	100	0	82	21	19	19	39	1.93
58008271--58008297	9	3.0	9	100	0	54	44	11	0	44	1.39
58009293--58009346	27	2.0	27	96	0	99	18	31	9	40	1.82
58009296--58009353	27	2.1	27	90	0	89	22	29	8	39	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58009413--58009494	30	2.7	30	90	0	119	47	7	19	25	1.75
58012868--58012914	15	3.1	15	70	11	51	40	8	23	27	1.83
58012867--58012924	30	1.9	31	92	3	100	37	6	27	27	1.82
58027701--58027784	18	4.6	17	78	14	80	27	0	3	69	1.05
58027705--58027803	47	2.1	48	81	9	114	25	3	3	68	1.18
58031096--58031166	29	2.4	30	83	2	90	52	7	8	32	1.59
58038404--58038483	26	3.2	26	63	33	66	40	16	15	28	1.88
58039245--58039510	142	1.9	142	86	3	383	40	20	14	23	1.90
58044968--58045046	27	3.0	27	72	5	81	53	2	0	44	1.14
58049952--58050278	90	3.6	89	85	2	413	27	6	14	51	1.66
58052080--58052139	23	2.6	24	82	7	63	25	13	0	61	1.32
58052126--58052184	16	3.6	17	75	24	56	20	8	3	67	1.31
58052133--58052184	16	3.2	15	82	15	59	17	9	3	69	1.31
58052206--58052325	5	22.4	5	72	18	73	29	17	0	52	1.50
58052214--58052296	11	7.7	11	74	16	68	31	18	0	50	1.47
58052194--58052325	23	6.1	22	68	19	82	29	17	0	52	1.50
58052227--58052325	28	3.4	28	82	12	101	29	16	1	53	1.49
58052227--58052325	33	3.2	33	76	14	118	29	16	1	53	1.49
58052396--58052436	16	2.6	16	88	3	57	24	14	0	60	1.34
58052715--58052843	26	5.3	26	67	23	102	23	14	0	62	1.32
58052724--58052848	21	5.5	21	71	20	90	24	13	0	61	1.32
58052715--58052864	47	3.2	47	89	2	221	22	14	0	62	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58052895--58053086	44	4.4	44	91	0	314	38	2	10	48	1.50
58052895--58053112	88	2.5	88	87	3	233	39	1	11	46	1.51
58055878--58056177	160	1.9	162	95	1	541	36	16	7	39	1.77
58056471--58056591	61	2.0	61	95	0	215	34	20	21	23	1.97
58064061--58064118	25	2.3	25	79	5	64	43	1	8	46	1.44
58064340--58064401	30	2.1	31	81	6	74	50	9	0	40	1.35
58065905--58065950	22	2.0	23	83	4	58	10	13	10	65	1.48
58067635--58067671	11	3.5	11	82	17	51	67	0	0	32	0.91
58067703--58067740	15	2.5	15	91	0	58	42	36	7	13	1.73
58067706--58067754	15	3.4	15	83	8	57	34	40	8	16	1.78

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205