genome.fa.s19.2.7.7.80.10.50.1000.131.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  61124829

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   

This is table  131  of  205  ( 24568 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39737729--39737793	25	2.6	25	82	4	69	29	23	21	26	1.99
39737692--39737793	51	2.1	48	82	10	118	29	22	19	28	1.98
39737849--39737905	9	5.9	9	80	15	69	40	19	3	36	1.69
39737841--39737927	20	4.3	20	88	2	131	36	18	8	36	1.80
39737841--39737928	9	8.7	11	74	17	66	37	18	7	36	1.80
39741128--39741312	50	3.7	49	82	4	228	25	16	27	31	1.96
39741128--39741312	99	1.9	100	88	1	282	25	16	27	31	1.96
39753588--39753694	52	2.1	52	92	0	178	27	14	22	36	1.92
39760456--39760519	12	5.3	12	87	7	94	42	0	12	45	1.42
39766161--39766385	40	5.6	40	85	6	294	24	28	22	24	1.99
39766161--39766385	83	2.8	82	86	6	309	24	28	22	24	1.99
39780130--39780154	13	1.9	13	100	0	50	36	16	32	16	1.90
39780661--39780698	10	3.8	10	83	13	51	21	18	31	28	1.97
39780638--39780698	20	3.0	20	83	9	63	27	14	27	29	1.95
39780662--39780699	20	1.9	20	94	0	67	18	18	34	28	1.95
39795559--39795622	13	4.8	13	79	11	58	75	4	6	14	1.17
39795559--39795595	16	2.4	16	95	4	67	81	8	5	5	0.99
39796705--39796838	67	2.0	67	100	0	268	31	26	19	22	1.98
39797047--39797178	66	2.0	66	98	0	255	25	25	24	25	2.00
39803866--39803899	12	2.8	12	95	4	59	79	0	5	14	0.91
39803848--39803900	12	3.7	14	78	17	56	75	1	9	13	1.12
39803849--39803900	13	3.7	14	85	12	63	75	1	9	13	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39808650--39808695	20	2.3	20	84	0	56	23	19	17	39	1.92
39808642--39808715	30	2.5	30	84	8	80	22	20	18	37	1.94
39811991--39812053	21	3.0	21	86	6	74	33	30	4	31	1.78
39812866--39813201	167	2.0	169	97	1	640	23	15	17	42	1.88
39817229--39817267	16	2.4	16	86	0	51	79	2	2	15	0.95
39818185--39818216	15	2.1	16	94	5	57	71	0	21	6	1.07
39818299--39818332	18	1.9	18	88	5	52	52	2	35	8	1.47
39819583--39819636	20	2.7	20	82	0	63	24	20	18	37	1.94
39819583--39819656	30	2.5	30	86	8	98	21	20	18	39	1.93
39819583--39819647	20	3.2	20	71	16	53	23	21	16	38	1.93
39822033--39822085	27	2.0	26	85	3	70	13	26	0	60	1.33
39822072--39822100	15	1.9	15	100	0	58	3	13	0	82	0.79
39822071--39822127	21	2.8	21	86	2	71	5	21	1	71	1.14
39823011--39823044	11	3.2	11	87	8	52	23	8	0	67	1.18
39823013--39823044	10	3.1	10	95	4	55	21	9	0	68	1.17
39823811--39824183	188	2.0	190	97	1	714	40	17	19	22	1.91
39824780--39824826	23	2.1	23	84	7	62	51	12	4	31	1.59
39827517--39827571	20	2.8	20	88	0	83	25	29	16	29	1.97
39828125--39828293	84	2.0	84	96	0	311	30	11	21	36	1.90
39828150--39828322	84	2.1	84	84	2	222	32	13	21	32	1.92
39829177--39829222	20	2.3	20	84	0	56	23	19	17	39	1.92
39829169--39829242	30	2.5	30	84	8	80	22	20	18	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39833642--39833706	21	3.0	21	76	17	55	69	6	20	4	1.28
39836741--39836918	27	6.6	27	83	3	196	30	28	14	26	1.95
39836762--39836917	82	1.9	81	86	3	224	30	28	14	26	1.95
39840349--39840397	10	4.9	10	78	9	55	26	16	30	26	1.97
39840351--39840397	20	2.3	20	89	7	69	25	17	31	25	1.97
39845447--39845493	20	2.3	20	85	0	67	29	36	12	21	1.91
39846652--39846686	9	3.9	9	89	10	54	85	0	11	2	0.69
39846638--39846692	19	2.7	19	83	16	67	78	1	14	5	1.02
39849516--39849562	20	2.3	20	85	0	67	29	36	12	21	1.91
39854659--39854713	20	2.8	20	80	0	74	40	16	20	23	1.91
39856307--39856369	21	3.0	21	85	2	72	33	33	4	28	1.78
39863898--39863928	14	2.2	14	100	0	62	12	29	0	58	1.35
39885322--39885377	24	2.3	24	84	6	69	3	26	3	66	1.25
39888618--39888842	112	2.0	112	98	0	432	20	20	19	39	1.93
39892968--39892999	9	3.6	9	91	0	55	50	37	9	3	1.51
39897911--39897949	19	2.2	17	86	9	51	43	7	2	46	1.46
39898445--39898469	12	2.1	12	100	0	50	24	16	36	24	1.94
39901827--39901865	18	2.3	18	86	8	55	69	0	15	15	1.20
39903542--39903604	21	3.0	21	83	2	72	31	33	4	30	1.78
39904825--39904968	72	2.0	72	97	0	270	35	11	25	27	1.91
39905216--39905382	84	2.0	84	93	0	289	27	9	11	50	1.70
39906279--39906362	42	2.0	42	88	0	123	26	28	15	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39908229--39908293	20	3.3	19	73	16	51	38	16	21	23	1.93
39909559--39909592	18	1.9	18	88	5	52	8	35	2	52	1.47
39909675--39909706	15	2.1	16	94	5	57	6	21	0	71	1.07
39910634--39910675	18	2.4	17	88	11	59	4	14	7	73	1.21
39912285--39912336	26	2.0	26	96	0	95	30	25	11	32	1.91
39913628--39913703	34	2.2	34	95	0	134	35	7	13	43	1.73
39915939--39915991	23	2.3	22	78	15	54	67	9	1	20	1.28
39917698--39917962	58	4.6	58	99	0	521	32	8	13	45	1.74
39918381--39918495	60	1.9	60	100	0	230	42	10	15	31	1.81
39919323--39919367	12	3.7	12	84	3	54	75	6	4	13	1.15
39919323--39919368	13	3.6	13	88	5	67	76	6	4	13	1.14
39922945--39923593	324	2.0	324	97	0	1226	27	18	26	27	1.98
39928076--39928223	40	3.7	40	94	0	251	30	20	27	21	1.98
39929211--39929341	66	2.0	66	95	3	237	32	17	14	35	1.90
39934435--39934513	39	2.0	39	100	0	158	31	7	22	37	1.82
39939140--39939196	27	2.1	27	96	0	105	19	24	17	38	1.93
39944117--39944371	129	2.0	129	94	0	447	20	21	32	26	1.97
39944522--39944665	27	5.3	27	83	1	146	30	22	7	39	1.82
39944664--39944837	27	6.4	27	76	6	138	40	20	9	29	1.84
39944797--39944864	28	2.5	27	77	13	75	42	13	10	33	1.78
39944776--39944878	27	3.8	27	73	16	95	43	18	7	30	1.78
39944934--39945000	27	2.5	26	81	11	82	37	16	22	23	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39945800--39945949	26	5.8	26	91	0	239	27	22	22	27	1.99
39945800--39945949	52	2.9	52	95	1	266	27	22	22	27	1.99
39946094--39946173	42	1.9	42	89	0	124	28	15	20	36	1.92
39946118--39946226	56	1.9	56	98	0	209	28	13	19	38	1.90
39948581--39948969	27	14.4	27	86	0	517	29	20	7	42	1.79
39948581--39948964	81	4.7	81	98	0	732	29	20	7	42	1.79
39949003--39949124	27	4.5	27	75	8	106	40	22	9	27	1.84
39949136--39949187	27	1.9	27	88	7	79	38	13	13	34	1.84
39951308--39951618	39	8.0	39	92	0	487	22	25	28	23	1.99
39953948--39953978	16	1.9	16	93	0	53	29	22	12	35	1.91
39954202--39954293	42	2.2	42	88	0	139	28	15	21	34	1.94
39954317--39954395	31	2.5	31	93	0	131	30	17	24	27	1.97
39956663--39956808	27	5.4	27	92	0	211	27	21	8	42	1.82
39956840--39956938	27	3.7	27	80	4	128	40	22	8	29	1.82
39956798--39956939	54	2.7	53	76	10	137	36	21	11	29	1.90
39956860--39956963	54	1.9	54	84	3	138	40	20	9	29	1.84
39956975--39957026	27	1.9	27	84	7	70	36	13	15	34	1.87
39957945--39958054	52	2.2	51	86	4	161	29	22	22	25	1.99
39957945--39958042	26	3.8	26	89	1	144	27	24	22	25	2.00
39958187--39958278	42	2.2	42	90	0	139	28	14	22	34	1.93
39958302--39958380	31	2.5	31	91	0	122	31	17	22	27	1.97
39960306--39960450	27	5.4	27	84	0	184	27	21	7	43	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39960442--39960584	27	5.3	26	70	13	85	38	21	10	29	1.87
39960482--39960619	27	5.1	27	75	11	113	40	21	7	30	1.81
39960617--39960668	27	1.9	27	88	0	77	36	11	15	36	1.84
39961588--39961735	26	5.8	26	89	1	221	27	23	22	27	1.99
39961588--39961735	52	2.9	52	94	3	257	27	23	22	27	1.99
39961880--39961971	42	2.2	42	90	0	139	29	15	21	33	1.94
39961995--39962071	31	2.5	31	93	0	136	29	18	24	27	1.98
39965117--39965278	43	3.8	43	85	0	209	20	24	22	32	1.98
39978216--39978276	30	2.0	30	83	0	77	31	22	8	37	1.84
39979952--39980188	117	2.0	117	98	0	456	29	22	12	35	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205