genome.fa.s19.2.7.7.80.10.50.1000.190.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  61124829

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   

This is table  190  of  205  ( 24568 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56437787--56437945	41	3.9	41	88	1	221	27	20	28	23	1.99
56437787--56437988	41	4.9	41	81	6	180	29	19	27	23	1.98
56437787--56437986	82	2.4	82	80	8	221	29	19	27	23	1.98
56438174--56438293	37	3.5	37	83	12	143	26	10	27	35	1.88
56440380--56440413	6	5.7	6	96	0	59	29	0	0	70	0.87
56441095--56441134	20	2.0	20	100	0	80	25	20	15	40	1.90
56452344--56452386	20	2.1	20	83	12	52	67	0	4	27	1.10
56461717--56461767	19	2.7	19	88	8	70	43	5	19	31	1.75
56463544--56463590	9	5.8	8	82	9	51	59	2	4	34	1.29
56474924--56474976	3	17.7	3	100	0	106	33	0	33	32	1.58
56484498--56484541	2	22.0	2	80	0	52	40	0	59	0	0.98
56488561--56488790	112	2.1	112	99	0	451	40	13	22	23	1.89
56491969--56491995	4	6.8	4	100	0	54	77	0	0	22	0.76
56495287--56495595	152	2.0	153	96	2	575	35	12	19	32	1.89
56495790--56495840	26	2.0	26	84	7	68	27	11	11	49	1.74
56500878--56501067	102	1.9	102	84	0	254	40	15	12	32	1.84
56507606--56507643	16	2.4	16	91	8	60	42	0	28	28	1.56
56507625--56507717	44	2.1	46	89	4	145	29	4	30	36	1.77
56507625--56507730	39	2.5	44	82	11	132	30	3	31	34	1.75
56507866--56507902	16	2.2	17	86	13	51	59	0	0	40	0.97
56507859--56507898	14	2.9	15	82	14	50	52	0	0	47	1.00
56507894--56507928	15	2.2	17	90	10	56	51	5	0	42	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56507883--56508190	61	5.1	61	69	13	260	50	4	2	43	1.35
56507854--56508205	120	2.9	120	96	0	659	50	3	2	43	1.34
56507988--56508022	18	2.0	17	88	5	52	54	0	2	42	1.15
56508014--56508043	15	1.9	16	93	6	53	50	6	0	43	1.28
56508108--56508142	18	2.0	17	88	5	52	54	0	0	45	0.99
56507854--56508142	59	4.8	59	70	14	225	50	3	2	43	1.30
56508134--56508163	15	1.9	16	93	6	53	50	6	0	43	1.28
56509315--56509339	13	1.9	13	100	0	50	8	28	16	48	1.74
56512598--56512651	16	3.4	16	84	0	72	42	5	29	22	1.76
56512630--56512717	45	2.0	44	82	6	106	31	5	26	36	1.80
56512809--56512897	35	2.5	35	80	10	92	51	2	1	44	1.21
56515911--56515937	14	1.9	14	100	0	54	62	0	29	7	1.22
56520939--56520974	15	2.4	15	100	0	72	25	13	36	25	1.93
56523999--56524125	67	1.9	67	95	0	227	36	19	10	33	1.86
56524792--56524821	15	2.1	15	93	6	53	53	26	0	20	1.46
56524790--56524827	14	2.6	16	84	16	55	55	26	0	18	1.43
56527874--56527930	19	2.7	22	84	10	66	36	8	15	38	1.79
56527949--56528259	155	2.0	155	100	0	622	27	20	17	35	1.95
56543987--56544017	4	7.8	4	92	0	53	25	0	22	51	1.48
56546047--56546086	13	3.1	13	92	0	71	30	7	25	37	1.83
56548998--56549046	23	2.1	23	100	0	98	67	0	0	32	0.91
56548998--56549055	23	2.5	23	91	0	80	67	0	1	31	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56553987--56554109	60	2.1	60	83	4	151	27	18	12	41	1.86
56555830--56555856	4	6.8	4	100	0	54	22	0	0	77	0.76
56563633--56563694	29	2.2	28	83	13	76	41	4	9	43	1.59
56565297--56565334	18	2.1	18	95	0	67	21	15	34	28	1.94
56576063--56576192	64	2.0	64	84	0	170	23	20	22	34	1.97
56576375--56576448	23	3.1	24	79	16	75	16	17	22	43	1.88
56576407--56576466	26	2.3	27	80	11	72	15	15	21	48	1.81
56580528--56580552	13	1.9	13	100	0	50	48	0	40	12	1.40
56580890--56580926	9	4.1	9	92	0	65	29	10	13	45	1.77
56581041--56581072	16	2.0	16	93	0	55	25	28	25	21	1.99
56586586--56586633	24	2.0	23	84	4	60	33	18	29	18	1.95
56588815--56588874	22	2.8	21	85	12	77	28	3	3	65	1.25
56594345--56594403	29	2.0	29	93	0	100	38	3	3	54	1.34
56596589--56596688	30	3.4	28	75	14	85	39	2	12	47	1.52
56596616--56596688	30	2.4	31	77	8	89	35	0	13	50	1.42
56596740--56597010	126	2.2	126	93	0	470	35	18	17	28	1.94
56600420--56600462	18	2.4	18	88	0	59	39	11	27	20	1.88
56601174--56601198	7	3.6	7	100	0	50	60	12	0	28	1.32
56602063--56602090	10	2.8	10	100	0	56	64	0	0	35	0.94
56602275--56602339	30	2.2	30	94	0	112	40	3	27	29	1.71
56604854--56604898	23	2.0	23	82	4	56	64	2	0	33	1.06
56605841--56605871	8	3.9	8	95	0	53	35	0	9	54	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56610660--56610741	41	2.0	41	92	0	137	30	6	14	48	1.68
56622572--56622628	3	19.0	3	85	7	80	38	29	0	31	1.58
56623802--56623838	9	3.9	10	86	10	51	62	2	0	35	1.10
56623802--56623838	19	1.9	19	88	0	56	62	2	0	35	1.10
56623765--56623856	48	1.9	48	86	6	134	55	2	1	41	1.19
56627616--56627674	30	1.9	32	86	6	86	30	1	10	57	1.42
56631091--56631275	50	3.7	50	99	0	361	16	32	23	26	1.96
56631370--56631401	13	2.5	13	94	0	55	56	12	0	31	1.37
56640142--56640172	16	1.9	16	93	0	53	25	22	16	35	1.94
56640768--56640831	31	2.1	31	93	0	110	37	15	10	35	1.83
56647384--56647424	11	3.8	11	78	18	50	73	0	0	26	0.84
56647386--56647428	21	2.0	22	90	4	70	72	0	0	27	0.85
56647396--56647520	27	4.2	28	69	17	81	63	0	0	35	1.06
56647412--56647449	20	1.9	20	94	0	67	57	0	2	39	1.12
56647382--56647525	19	7.6	19	66	23	56	63	0	0	35	1.05
56648041--56648231	9	20.0	9	63	17	64	34	3	4	58	1.35
56648083--56648135	22	2.4	22	81	12	65	35	0	7	56	1.28
56648083--56648233	20	7.8	19	69	19	73	34	1	5	58	1.32
56648152--56648256	38	2.8	37	71	12	88	31	2	5	60	1.35
56651461--56651773	93	3.3	94	94	3	517	29	6	19	44	1.75
56666262--56666806	114	4.8	112	75	9	442	30	17	24	26	1.98
56666909--56666944	18	2.0	18	89	10	56	25	0	5	69	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56667266--56667322	29	2.0	29	82	0	69	28	5	31	35	1.79
56667890--56667950	7	8.6	7	87	3	68	8	0	45	45	1.33
56667899--56667958	7	8.6	7	87	7	59	13	0	41	45	1.43
56668458--56668685	74	3.1	74	66	17	211	23	14	23	38	1.92
56668401--56668727	147	2.2	147	96	0	591	25	14	22	37	1.92
56668400--56668631	73	3.1	74	66	17	183	24	12	21	40	1.89
56668476--56668728	73	3.5	71	67	13	181	25	15	24	35	1.94
56668401--56668781	147	2.6	146	90	2	543	24	13	22	38	1.91
56668401--56668853	147	3.1	146	87	3	482	24	13	24	37	1.92
56670274--56670312	10	3.9	10	89	0	60	41	0	0	58	0.98
56673620--56673652	7	4.9	7	92	7	59	87	0	0	12	0.53
56673619--56673653	13	2.5	15	86	13	56	88	0	0	11	0.51
56675356--56675388	7	4.9	7	92	7	59	87	0	0	12	0.53
56675355--56675389	13	2.5	15	86	13	56	88	0	0	11	0.51
56679278--56679327	21	2.4	21	82	0	64	38	18	42	2	1.61
56679609--56679724	41	2.8	41	74	1	115	32	18	20	27	1.97
56679697--56679794	42	2.3	42	89	0	160	23	21	22	32	1.98
56680715--56680756	15	2.9	15	82	10	52	52	0	0	47	1.00
56680846--56680880	18	2.0	17	88	5	52	54	0	0	45	0.99
56680941--56680987	16	3.0	16	78	12	53	51	2	0	46	1.13
56680706--56681121	120	3.5	120	97	0	787	49	6	1	43	1.38
56681125--56681302	71	2.5	71	83	9	184	46	3	3	46	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56681162--56681215	15	3.9	15	72	16	53	51	1	0	46	1.11
56681167--56681302	71	1.9	71	92	4	227	47	3	2	46	1.35
56688634--56688669	6	6.0	6	86	0	54	36	13	16	33	1.89
56689128--56689209	32	2.6	32	80	3	94	19	40	23	17	1.91
56690225--56690283	32	1.9	32	83	10	79	74	1	3	20	1.05
56696336--56696446	46	2.4	46	85	7	147	43	8	8	40	1.64
56700073--56700405	115	2.9	115	81	3	377	33	20	19	27	1.96
56700508--56700670	84	1.9	84	86	4	231	30	23	20	25	1.99
56701491--56701811	114	2.8	115	79	6	314	23	14	20	41	1.89
56701991--56702067	40	1.9	40	89	0	118	16	41	2	38	1.63

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205