genome.fa.s19.2.7.7.80.10.50.1000.171.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  61124829

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   

This is table  171  of  205  ( 24568 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50861208--50861240	16	2.0	17	88	5	50	45	3	12	39	1.57
50873466--50873575	56	2.0	56	98	0	211	34	4	4	56	1.40
50873531--50873569	21	1.9	20	84	5	51	38	2	0	58	1.12
50875730--50875792	32	2.0	32	84	3	83	44	7	19	28	1.78
50880143--50880190	21	2.3	21	82	10	64	29	29	27	14	1.95
50882671--50882717	23	2.1	21	81	14	51	25	2	25	46	1.64
50887719--50887819	31	3.3	30	77	13	116	53	3	0	41	1.26
50887718--50887845	61	2.1	61	92	0	211	51	4	1	42	1.32
50902886--50902923	9	4.3	9	86	3	51	68	5	2	23	1.23
50912097--50912152	27	2.1	27	100	0	112	46	14	0	39	1.44
50912683--50912795	43	2.6	43	87	2	156	29	22	19	29	1.98
50913219--50913344	66	1.9	65	81	12	150	14	24	18	42	1.87
50918350--50918393	18	2.5	17	80	16	54	11	9	2	77	1.08
50918975--50919017	16	2.7	15	89	10	68	16	0	2	81	0.79
50923061--50923109	18	2.7	18	84	12	57	81	4	12	2	0.91
50923076--50923116	12	3.3	12	83	6	55	80	2	17	0	0.82
50923061--50923117	13	4.5	13	80	6	64	80	3	14	1	0.92
50923061--50923117	25	2.3	25	84	6	80	80	3	14	1	0.92
50923389--50923476	45	1.9	47	81	4	108	27	14	7	50	1.71
50923450--50923645	108	1.8	108	85	2	277	26	17	9	46	1.78
50924088--50924226	44	3.2	43	66	17	115	28	21	23	27	1.99
50924089--50924868	88	8.9	88	84	1	876	28	21	24	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50924290--50924621	44	7.5	43	66	12	154	28	23	24	23	2.00
50924947--50925131	95	1.9	95	88	4	275	28	20	22	28	1.98
50925144--50926083	44	22.3	44	81	9	987	33	23	20	22	1.97
50925144--50926083	84	11.2	84	87	6	1282	33	23	20	22	1.97
50926769--50926811	18	2.5	17	82	14	52	11	9	2	76	1.10
50927599--50927665	7	9.4	7	82	9	82	16	0	1	82	0.75
50929052--50929119	35	1.9	35	93	0	118	38	5	10	45	1.63
50929398--50929433	15	2.4	15	100	0	72	13	5	5	75	1.17
50929974--50930024	25	2.1	23	82	7	57	23	13	5	56	1.59
50930181--50930217	19	1.9	19	88	0	56	70	5	0	24	1.08
50932666--50932785	40	3.0	40	83	3	125	20	20	20	39	1.93
50936915--50936957	21	2.0	21	82	8	52	13	16	13	55	1.69
50938270--50938398	41	3.2	39	79	4	123	36	21	20	20	1.95
50938270--50938398	39	3.2	38	78	8	123	36	21	20	20	1.95
50941220--50941290	21	3.4	21	80	0	79	33	18	45	2	1.64
50941514--50941547	14	2.4	14	95	0	59	17	8	20	52	1.71
50941664--50941987	42	7.7	42	93	2	517	23	21	20	33	1.97
50941616--50941987	84	4.5	84	89	3	529	25	21	20	33	1.97
50951372--50951409	7	5.4	7	90	0	58	42	7	28	21	1.81
50951367--50951409	21	2.0	21	90	0	68	39	9	27	23	1.85
50951372--50951409	14	2.7	14	95	0	67	42	7	28	21	1.81
50951335--50951460	65	1.9	65	90	0	198	34	14	23	27	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50951386--50951608	51	4.4	51	87	0	313	34	14	21	29	1.93
50951388--50951608	102	2.2	101	91	0	352	34	14	21	29	1.93
50958038--50958076	14	2.8	14	88	0	60	46	7	25	20	1.77
50957989--50958112	65	1.9	65	94	0	221	35	14	22	27	1.93
50958054--50958213	44	3.5	43	82	13	194	33	14	24	28	1.94
50958103--50958205	50	2.0	51	90	1	163	33	15	24	27	1.95
50960251--50960329	36	2.2	36	93	2	131	37	12	20	29	1.89
50960293--50960464	46	3.8	46	93	2	287	32	16	22	28	1.95
50968900--50969462	114	4.9	114	96	0	1036	31	15	26	25	1.96
50968900--50969571	342	2.0	342	87	2	974	31	16	26	24	1.96
50971277--50971317	17	2.3	19	83	8	59	29	46	2	21	1.64
50973129--50973362	9	25.8	9	76	6	213	49	16	2	31	1.60
50973204--50973363	37	4.4	37	77	10	123	48	18	2	30	1.61
50973184--50973383	91	2.2	91	88	1	267	49	18	2	30	1.58
50979184--50979742	279	2.0	279	97	0	1064	31	15	23	28	1.95
50982164--50982329	43	3.9	43	94	0	280	22	20	21	35	1.96
50982381--50982424	22	2.0	22	90	0	70	45	27	18	9	1.79
50982522--50982552	12	2.5	13	89	10	55	48	0	0	51	1.00
50985990--50986067	26	2.9	26	94	3	129	11	35	29	23	1.90
50990219--50990252	17	2.0	17	100	0	68	35	5	23	35	1.79
50994693--50994745	23	2.3	23	81	12	65	69	1	0	28	0.99
50994724--50994778	28	1.9	29	85	10	78	58	0	0	41	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51002078--51002106	14	2.0	15	93	6	51	51	0	0	48	1.00
51002248--51002307	29	2.1	29	100	0	120	45	20	0	35	1.51
51012321--51012364	13	3.3	14	84	9	56	50	0	0	50	1.00
51012323--51012362	14	2.8	16	78	21	52	47	0	0	52	1.00
51012367--51012428	20	3.2	20	72	21	60	53	1	0	45	1.10
51025009--51025051	21	2.0	21	82	8	52	11	11	32	44	1.77
51026356--51026389	16	2.1	17	88	5	52	76	11	0	11	1.02
51027895--51027965	9	7.7	9	74	10	63	78	2	1	16	0.94
51027853--51027963	47	2.4	45	82	12	138	74	3	1	19	1.05
51028355--51028405	20	2.5	21	87	9	70	29	23	15	31	1.95
51028683--51028731	20	2.5	20	96	0	89	57	22	4	16	1.56
51031111--51031157	23	2.1	22	92	4	76	76	0	21	2	0.89
51034931--51035177	113	2.2	113	96	0	449	31	15	19	33	1.93
51035128--51035177	21	2.4	21	80	6	57	32	22	16	30	1.95
51041414--51041600	84	2.2	83	91	0	293	30	13	13	42	1.83
51046704--51046792	44	2.0	44	100	0	178	51	11	8	28	1.67
51051102--51051155	18	3.1	17	81	7	63	35	18	1	44	1.61
51051226--51051262	2	18.5	2	100	0	74	51	48	0	0	1.00
51052382--51052435	18	3.1	17	81	7	72	44	0	20	35	1.52
51053049--51053176	66	1.9	66	84	6	170	34	16	23	25	1.95
51053055--51053179	33	3.8	33	68	5	92	32	16	24	25	1.96
51056727--51056801	39	1.9	39	88	0	114	28	4	20	48	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51056736--51056821	39	2.2	39	83	4	102	27	4	20	46	1.71
51062607--51062701	50	1.9	50	85	8	131	31	24	14	29	1.95
51062637--51062791	76	2.0	76	84	0	202	30	19	14	36	1.91
51062744--51062800	25	2.3	26	81	9	73	35	17	12	35	1.87
51064114--51064145	16	2.0	16	93	0	55	18	21	15	43	1.87
51067508--51067737	114	2.0	114	98	0	442	30	17	11	39	1.86
51068367--51068566	85	2.4	85	88	0	294	33	25	17	24	1.96
51068406--51068565	43	3.7	43	73	9	148	34	26	16	22	1.95
51068580--51068629	25	2.0	26	84	11	68	26	34	22	18	1.96
51068966--51069023	30	1.9	30	85	0	80	29	24	8	37	1.85
51074354--51074398	11	4.1	11	77	11	56	51	0	0	48	1.00
51074354--51074396	6	7.7	6	80	15	56	51	0	0	48	1.00
51074572--51074619	23	2.1	23	88	0	69	20	35	27	16	1.94
51078516--51078661	68	2.1	68	83	7	181	27	20	14	37	1.91
51080456--51080869	208	2.0	208	92	0	693	26	14	19	38	1.91
51091842--51091895	28	1.9	28	96	0	99	31	25	25	16	1.97
51091837--51091902	28	2.4	27	85	7	96	31	24	24	19	1.98
51092112--51092270	64	2.5	64	83	2	176	36	22	22	18	1.95
51092107--51092273	32	5.2	32	78	1	138	35	20	23	20	1.96
51092668--51092943	27	10.4	27	84	1	283	27	15	16	39	1.89
51096407--51096437	16	1.9	16	93	0	53	32	25	16	25	1.96
51097456--51097509	28	1.9	28	88	0	81	29	24	27	18	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51097451--51097516	28	2.4	27	80	7	78	30	22	25	21	1.99
51097713--51097810	32	3.1	32	80	0	115	37	19	21	21	1.94
51097825--51097888	27	2.4	27	80	12	71	31	21	25	21	1.98
51097953--51098011	24	2.5	23	83	8	82	45	23	8	22	1.79
51098051--51098282	27	8.6	27	85	0	293	25	20	18	36	1.95
51099243--51099389	32	4.6	32	78	0	132	33	25	23	18	1.97
51099243--51099381	64	2.2	64	84	0	179	33	23	24	17	1.96
51099243--51099413	32	5.4	31	76	10	123	35	23	23	18	1.96
51100123--51100162	21	1.9	21	89	0	62	40	20	2	37	1.66
51112223--51112400	63	2.8	61	78	6	185	23	26	22	27	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205