genome.fa.s19.2.7.7.80.10.50.1000.193.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  61124829

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   

This is table  193  of  205  ( 24568 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57167777--57167927	47	3.2	46	82	3	185	11	12	28	47	1.77
57167777--57167867	25	3.8	25	75	11	91	10	16	27	45	1.81
57170780--57170834	24	2.3	24	80	0	74	18	12	7	61	1.53
57170851--57170885	19	1.9	17	88	11	52	25	2	5	65	1.28
57170851--57170891	18	2.2	19	83	12	50	26	4	4	63	1.35
57182200--57182288	25	3.6	25	68	17	67	31	30	15	22	1.95
57184312--57184400	25	3.6	25	68	17	67	31	30	15	22	1.95
57188859--57189230	27	13.8	27	80	6	333	18	15	22	43	1.88
57188859--57189231	54	6.9	54	81	4	378	18	15	21	43	1.88
57188870--57189233	81	4.5	79	81	4	406	18	15	21	44	1.87
57192993--57193047	16	3.5	16	72	18	53	36	0	1	61	1.06
57192992--57193102	30	3.7	29	77	12	116	38	0	5	54	1.29
57203268--57203292	13	1.9	13	100	0	50	32	16	20	32	1.94
57209203--57209236	9	3.8	9	88	0	50	29	8	14	47	1.75
57220380--57220434	22	2.5	22	77	13	60	63	1	1	32	1.15
57221994--57222133	70	2.0	70	92	2	237	27	10	19	43	1.82
57222562--57222587	12	2.2	12	100	0	52	69	0	7	23	1.14
57232041--57232107	7	9.7	7	77	18	61	23	1	0	74	0.90
57232047--57232098	18	3.0	17	81	10	61	21	1	0	76	0.87
57232047--57232112	8	7.4	8	76	20	51	21	1	0	77	0.85
57232064--57232104	15	2.7	16	88	7	59	21	2	0	75	0.92
57232039--57232109	17	4.1	17	79	20	76	23	1	0	74	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57234300--57234351	22	2.4	22	87	3	70	40	0	30	28	1.57
57234459--57234488	15	2.0	15	100	0	60	6	6	20	66	1.38
57245312--57245544	54	4.1	54	74	14	234	42	1	7	47	1.42
57245327--57245412	28	3.1	27	65	24	63	46	2	8	43	1.46
57245414--57245465	15	3.6	15	80	12	56	44	0	1	53	1.11
57245543--57245587	15	2.8	16	83	10	56	48	0	0	51	1.00
57245544--57245584	16	2.6	16	88	7	57	46	0	0	53	1.00
57245695--57245804	45	2.6	43	81	11	129	33	29	4	32	1.78
57245785--57245835	16	3.2	16	94	0	84	33	39	0	27	1.57
57250546--57250576	6	5.2	6	100	0	62	67	0	0	32	0.91
57252500--57252578	41	1.9	42	86	2	115	31	25	17	25	1.97
57252722--57253075	123	2.9	124	89	0	541	42	16	9	31	1.79
57252699--57253100	185	2.2	184	88	3	601	43	16	8	31	1.78
57252699--57253089	92	4.2	92	88	1	550	43	16	8	31	1.79
57252699--57253089	31	12.7	31	88	2	531	43	16	8	31	1.79
57259159--57259499	31	11.1	31	81	3	332	43	16	9	30	1.79
57259159--57259488	93	3.6	93	85	3	393	43	16	9	30	1.80
57270332--57270396	19	3.5	19	83	12	64	69	3	1	26	1.12
57271495--57271541	23	2.0	23	83	0	58	68	2	2	27	1.13
57274663--57274706	21	2.1	21	100	0	88	29	6	13	50	1.68
57281519--57281573	23	2.4	23	84	0	65	34	16	1	47	1.57
57282684--57282724	11	3.9	11	75	12	50	0	14	4	80	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57282684--57282731	20	2.4	21	79	10	55	0	16	4	79	0.89
57290471--57290543	36	2.0	36	100	0	146	19	15	8	57	1.62
57295308--57295496	51	3.7	50	84	5	238	29	24	15	30	1.96
57303791--57303913	41	3.0	41	82	0	156	31	26	22	18	1.97
57309696--57309753	24	2.3	27	80	14	70	70	1	22	5	1.16
57318713--57318743	12	2.6	12	94	0	53	19	25	25	29	1.99
57321415--57321502	41	2.1	41	80	0	95	38	28	17	15	1.90
57321425--57321503	41	1.9	41	84	0	104	36	30	17	15	1.91
57324079--57324107	8	3.6	8	100	0	58	34	37	0	27	1.57
57324938--57325010	26	2.9	26	80	9	71	4	27	1	67	1.17
57334445--57334488	18	2.4	18	84	0	61	43	11	11	34	1.77
57334595--57334743	74	2.0	74	98	0	289	28	22	20	29	1.98
57335925--57335957	9	3.7	9	88	12	50	75	0	9	15	1.03
57343722--57343772	21	2.4	22	80	9	61	27	27	29	15	1.96
57347250--57347281	15	2.1	15	100	0	64	18	28	6	46	1.73
57352706--57352739	17	2.0	17	100	0	68	76	0	0	23	0.79
57352735--57352761	6	4.5	6	100	0	54	51	0	0	48	1.00
57353770--57353804	15	2.2	16	90	5	54	51	0	5	42	1.25
57353779--57353832	19	2.7	19	85	8	63	46	1	9	42	1.46
57354920--57355126	30	6.9	30	82	2	220	32	10	19	37	1.85
57354920--57355123	89	2.3	89	85	2	257	31	9	20	38	1.85
57367923--57367979	29	2.0	29	89	6	89	15	15	22	45	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57370481--57370523	18	2.4	18	80	7	52	37	2	0	60	1.10
57371067--57371132	23	3.0	23	86	4	82	46	4	1	46	1.32
57371170--57371262	17	5.6	16	71	25	61	53	3	3	39	1.33
57382927--57383102	37	4.8	37	96	0	298	39	13	21	26	1.90
57383065--57383188	46	2.8	46	91	3	200	33	16	22	27	1.96
57390625--57390800	37	4.8	37	96	0	298	39	13	21	26	1.90
57390763--57390886	46	2.8	46	91	3	200	33	16	22	27	1.96
57392617--57392651	17	2.0	18	88	5	54	22	2	0	74	0.95
57396268--57396309	19	2.2	20	83	12	52	66	11	16	4	1.40
57397479--57397561	42	2.0	41	90	4	132	34	4	10	49	1.59
57399193--57399267	25	2.7	29	76	18	86	29	21	5	44	1.74
57401538--57401724	43	4.3	43	75	5	171	32	28	17	21	1.96
57404316--57404397	43	1.9	43	94	0	146	39	12	12	36	1.80
57404311--57404404	43	2.2	41	85	7	134	43	10	12	32	1.77
57405509--57406012	148	3.4	149	94	2	874	31	15	16	36	1.90
57406468--57406516	14	3.5	13	78	15	53	34	42	0	22	1.54
57406782--57406836	15	3.7	15	76	11	60	34	47	0	18	1.49
57406782--57406815	8	4.6	7	86	13	50	32	50	0	17	1.47
57406831--57406859	14	2.1	14	100	0	58	34	37	0	27	1.57
57407125--57407299	73	2.4	74	89	0	271	24	26	22	26	2.00
57407031--57407413	188	2.1	185	88	1	577	25	26	20	27	1.99
57407199--57407527	114	2.9	114	89	0	480	25	27	20	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57407430--57407600	73	2.3	73	84	5	229	26	26	17	29	1.98
57407921--57407956	18	2.0	18	100	0	72	44	5	16	33	1.71
57408007--57408042	18	2.0	18	88	0	54	22	2	0	75	0.94
57412030--57412121	22	4.2	22	87	5	141	30	30	0	39	1.57
57412093--57412151	30	2.0	30	93	0	100	30	35	0	33	1.58
57412071--57412173	52	2.0	51	85	9	138	32	33	0	33	1.58
57412123--57412164	22	1.9	22	90	0	66	33	33	0	33	1.58
57412207--57412263	28	2.0	30	89	6	91	35	0	1	63	1.05
57412209--57412270	28	2.1	30	85	5	83	35	0	1	62	1.05
57412208--57412270	29	2.1	30	85	8	85	34	0	1	63	1.04
57414540--57414604	23	2.4	29	71	28	88	47	26	0	26	1.52
57414550--57414604	23	2.4	23	100	0	110	47	25	0	27	1.52
57414746--57415273	23	21.8	24	84	13	626	48	23	0	28	1.51
57415266--57415483	55	4.0	55	98	0	391	40	11	5	41	1.66
57415391--57415484	26	3.5	26	67	13	73	40	9	5	44	1.60
57415467--57415491	10	2.5	10	100	0	50	44	8	0	48	1.32
57418635--57418877	124	2.0	123	83	2	308	30	23	14	32	1.94
57418636--57418912	124	2.2	123	79	5	299	31	22	14	31	1.94
57420355--57420387	17	1.9	17	93	0	57	45	9	6	39	1.61
57427896--57427947	16	3.2	16	94	0	86	28	0	36	34	1.58
57427928--57428022	45	2.1	44	88	1	136	32	6	27	33	1.82
57428182--57428216	18	2.0	17	88	5	52	54	0	0	45	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57432835--57432879	22	2.0	23	82	4	56	48	4	0	46	1.22
57433839--57433901	25	2.6	24	76	14	67	57	0	0	42	0.99
57433872--57433963	48	1.9	48	82	8	116	54	10	0	34	1.36
57434095--57434128	17	2.0	17	94	0	59	26	0	2	70	1.01
57437579--57437610	16	2.0	16	100	0	64	31	12	6	50	1.65
57438865--57438898	17	2.0	17	94	0	59	44	14	5	35	1.70
57442136--57442181	24	1.9	24	95	0	83	52	19	0	28	1.47
57446626--57446659	17	2.0	17	100	0	68	23	17	17	41	1.90
57455394--57455495	25	4.1	25	80	7	109	21	31	15	31	1.95
57456615--57456648	17	2.0	17	100	0	68	5	23	23	47	1.73

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205