genome.fa.s19.2.7.7.80.10.50.1000.13.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  61124829

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   

This is table  13  of  205  ( 24568 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4015755--4015869	39	2.9	39	92	0	185	34	32	17	15	1.91
4019675--4019725	14	3.3	15	74	17	50	78	1	13	5	1.02
4021029--4021082	23	2.4	22	87	3	72	38	11	22	27	1.88
4025073--4025105	16	2.1	15	94	5	57	45	0	0	54	0.99
4027597--4027629	16	2.1	15	94	5	57	24	12	27	36	1.91
4034191--4034279	44	2.0	45	91	6	146	15	47	28	8	1.76
4034411--4034435	11	2.3	11	100	0	50	0	24	0	76	0.80
4035309--4035348	20	2.0	20	90	0	62	37	2	2	57	1.26
4037684--4037730	23	2.0	23	84	8	60	63	4	6	25	1.36
4053236--4053310	21	3.4	22	78	10	73	64	2	1	32	1.16
4054643--4054681	18	2.1	19	86	13	55	35	0	5	58	1.20
4061690--4061775	30	2.9	29	75	17	86	51	1	1	46	1.16
4061688--4061760	38	1.9	37	81	10	85	53	1	0	45	1.09
4074222--4074282	23	2.5	26	84	15	85	31	22	24	21	1.98
4075699--4075855	41	3.8	41	81	0	170	19	18	26	35	1.95
4076678--4076797	24	5.1	24	71	9	95	25	7	20	47	1.75
4076677--4076816	70	2.0	69	87	4	201	27	8	20	44	1.80
4076677--4076813	23	5.9	23	71	13	100	27	7	20	45	1.77
4078613--4078730	37	3.5	36	82	13	144	33	27	10	27	1.89
4078915--4079042	41	3.1	41	90	0	220	23	27	19	29	1.98
4079263--4079306	17	2.7	17	89	6	65	43	18	2	36	1.63
4080442--4080466	13	1.9	13	100	0	50	68	24	0	8	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4080743--4080857	43	2.7	44	86	2	135	33	24	17	24	1.96
4086074--4086140	28	2.4	28	89	0	98	29	11	28	29	1.92
4100540--4100564	11	2.3	11	100	0	50	16	0	0	84	0.63
4101485--4101555	26	2.7	26	84	0	97	23	26	22	26	2.00
4101759--4101832	13	5.7	13	83	0	85	45	1	20	32	1.59
4101762--4101832	26	2.7	26	91	0	106	45	1	21	32	1.61
4103099--4103186	35	2.5	35	90	0	149	12	14	35	37	1.84
4104932--4105092	18	9.3	17	70	11	69	42	8	13	36	1.73
4104967--4105186	18	12.3	18	73	13	170	44	9	14	32	1.76
4104966--4105187	17	12.4	17	70	17	87	43	9	13	33	1.76
4105052--4105175	56	2.2	56	84	13	159	43	8	15	33	1.76
4105272--4105321	17	2.9	17	74	14	57	46	8	14	32	1.73
4105895--4105963	26	2.5	26	81	11	68	4	27	42	26	1.74
4105978--4106060	33	2.7	28	77	20	78	4	20	46	27	1.70
4106191--4106261	7	9.4	7	74	19	63	0	22	0	77	0.77
4106195--4106267	6	11.3	6	74	18	58	0	23	0	76	0.78
4106214--4106267	26	2.1	26	82	6	65	0	25	0	74	0.83
4106396--4106440	20	2.3	20	88	3	65	0	17	8	73	1.08
4106464--4106497	17	2.0	17	88	0	50	8	20	52	17	1.71
4106747--4106981	30	8.0	29	83	8	260	38	0	22	39	1.57
4106757--4106964	29	7.1	29	83	11	246	37	0	23	38	1.55
4106757--4106981	59	3.8	56	85	7	270	38	0	22	38	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4107913--4108056	42	3.4	41	80	10	166	31	24	14	29	1.95
4113304--4113407	52	2.0	51	94	1	181	22	22	20	34	1.96
4119336--4119396	27	2.3	26	76	18	63	55	1	0	42	1.09
4122542--4122602	30	2.0	31	90	6	99	21	39	0	39	1.53
4122350--4122598	127	2.0	126	86	5	353	21	32	1	44	1.60
4126648--4126675	14	2.0	14	100	0	56	35	7	7	50	1.57
4128843--4129004	80	2.0	80	97	0	306	32	6	18	42	1.75
4129506--4129617	56	2.0	56	98	0	215	41	8	15	33	1.78
4129729--4129851	55	2.2	56	88	2	176	26	12	28	33	1.92
4129729--4129851	28	4.4	28	90	2	176	26	12	28	33	1.92
4129754--4129864	28	4.0	27	90	3	116	28	11	26	33	1.91
4131152--4131697	272	2.0	272	97	0	1038	31	16	22	29	1.96
4136780--4136859	24	3.3	24	96	0	142	8	37	12	41	1.74
4142569--4142594	5	5.2	5	100	0	52	61	0	0	38	0.96
4149457--4149482	5	5.2	5	100	0	52	38	0	61	0	0.96
4151005--4151064	23	2.6	22	82	7	59	26	20	35	18	1.95
4151013--4151064	23	2.3	23	84	12	72	26	19	34	19	1.95
4153067--4153181	25	4.6	25	75	10	92	18	25	21	34	1.96
4153070--4153181	50	2.2	51	79	7	131	18	25	22	33	1.96
4153095--4153192	25	3.9	25	75	9	83	18	25	21	34	1.96
4153072--4153199	50	2.6	50	78	5	125	20	24	23	32	1.98
4154208--4154365	83	1.9	87	80	7	191	26	23	20	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4159127--4159197	25	3.0	23	71	20	65	38	19	26	15	1.92
4161774--4161854	37	2.2	37	77	18	89	48	2	0	49	1.14
4161857--4161891	18	1.9	18	88	0	52	57	0	2	40	1.14
4161856--4161933	31	2.5	30	76	17	79	48	0	2	48	1.15
4171001--4171063	31	2.1	30	87	3	90	34	14	12	38	1.84
4175079--4175128	20	2.6	20	81	6	59	34	2	10	54	1.45
4176974--4177040	29	2.3	29	82	5	73	37	0	1	61	1.05
4176980--4177029	20	2.6	19	82	14	59	32	0	2	66	1.03
4177075--4177117	19	2.1	21	87	8	63	37	2	2	58	1.24
4180416--4180469	27	2.0	27	92	0	90	20	29	11	38	1.87
4184930--4185076	72	2.0	72	97	0	276	32	18	31	17	1.94
4189373--4189406	13	2.6	13	86	13	52	26	11	17	44	1.83
4192522--4192600	24	3.2	24	90	1	113	41	20	21	16	1.90
4193205--4193280	26	2.9	27	82	3	93	26	22	30	21	1.99
4193351--4193420	19	3.7	19	82	3	97	37	10	0	52	1.35
4193356--4193426	37	1.9	37	100	0	142	39	11	0	49	1.39
4193735--4193775	19	2.1	19	86	4	55	53	0	9	36	1.34
4193985--4194055	37	1.9	37	97	0	133	49	1	11	38	1.48
4193991--4194059	19	3.7	19	78	5	88	52	1	10	36	1.44
4194212--4194305	27	3.6	27	84	11	133	46	1	12	39	1.49
4194411--4194449	5	7.6	5	82	5	51	41	17	0	41	1.50
4202087--4202211	36	3.5	36	98	0	232	36	14	18	30	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4202195--4202228	17	2.0	17	94	0	59	23	26	11	38	1.89
4202232--4202317	45	1.9	44	90	6	138	33	18	20	26	1.96
4207886--4207983	24	4.0	24	74	10	92	38	18	20	22	1.93
4208173--4208223	23	2.2	23	82	3	57	23	21	27	27	1.99
4211602--4211657	23	2.3	24	87	9	78	67	0	0	32	0.91
4226904--4226994	33	2.7	34	81	5	114	53	17	9	18	1.70
4231939--4231985	13	3.7	13	81	13	53	42	27	4	25	1.73
4233941--4233988	17	2.6	20	71	18	50	56	0	2	41	1.11
4236316--4236399	42	2.0	42	85	0	114	29	10	38	21	1.87
4255722--4255871	77	1.9	78	91	1	248	44	4	7	44	1.50
4264971--4265002	14	2.3	14	94	0	55	53	15	0	31	1.43
4268551--4268613	31	2.0	31	100	0	126	31	12	12	42	1.81
4269274--4269313	19	2.1	19	100	0	80	27	10	20	42	1.83
4272004--4272046	22	2.0	22	86	4	61	25	13	6	53	1.65
4283809--4283843	3	11.7	3	100	0	70	68	0	0	31	0.90
4287188--4287245	26	2.2	26	100	0	116	24	22	24	29	1.99
4291599--4291633	15	2.3	15	100	0	70	57	0	0	42	0.99
4292595--4293421	414	2.0	414	99	0	1636	37	13	16	33	1.87
4298540--4298575	18	2.0	18	88	0	54	25	5	5	63	1.38
4302267--4302353	28	3.1	28	69	17	74	43	1	2	52	1.21
4302279--4302474	54	3.8	53	70	17	160	45	1	3	49	1.28
4302405--4302453	15	2.9	18	80	20	61	44	0	0	55	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4302405--4302459	15	3.4	16	80	16	53	43	0	1	54	1.10
4302604--4302694	45	2.0	45	85	2	121	37	28	6	27	1.82
4302675--4302743	16	4.2	16	96	3	129	39	36	0	24	1.56
4302675--4302743	33	2.1	32	97	2	129	39	36	0	24	1.56
4303413--4303439	10	2.7	10	100	0	54	29	7	18	44	1.77
4303981--4304016	15	2.4	14	86	13	54	19	8	2	69	1.27
4306683--4306753	26	2.7	26	89	8	83	43	0	1	54	1.08
4306668--4306813	16	9.3	15	68	19	59	39	1	2	56	1.22
4306571--4306795	73	3.1	76	73	17	249	42	1	3	52	1.29
4306691--4306825	26	5.0	27	72	14	125	42	0	2	54	1.18

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205