genome.fa.s19.2.7.7.80.10.50.1000.78.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  61124829

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   

This is table  78  of  205  ( 24568 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23263207--23263266	18	3.2	19	75	11	70	23	28	8	40	1.83
23267890--23268110	51	4.4	50	78	8	207	30	13	24	31	1.94
23267889--23268073	51	3.7	49	80	7	219	29	14	24	31	1.95
23277257--23277545	153	1.9	153	91	0	479	36	12	20	30	1.89
23277851--23277892	21	2.0	21	85	4	57	42	21	2	33	1.66
23278430--23278518	25	3.1	30	74	21	91	26	24	5	42	1.77
23279297--23279506	106	2.0	106	96	0	384	27	15	26	30	1.96
23289131--23289173	21	1.9	24	86	13	65	46	2	11	39	1.53
23289319--23289369	20	2.5	21	84	9	70	25	15	15	43	1.86
23293421--23293561	40	3.5	40	90	0	221	10	14	29	45	1.78
23295063--23295110	20	2.4	20	89	6	71	29	14	14	41	1.85
23297056--23297081	7	3.7	7	100	0	52	57	30	0	11	1.34
23300134--23300164	15	2.1	15	100	0	62	19	0	38	41	1.51
23302229--23302280	14	3.4	15	76	17	54	46	5	3	44	1.45
23303742--23303773	15	2.1	15	100	0	64	0	25	6	68	1.12
23304352--23304383	16	2.0	16	93	0	55	34	9	0	56	1.32
23306343--23306389	18	2.6	18	93	0	76	48	17	0	34	1.47
23306343--23306392	10	5.2	10	88	9	68	48	18	0	34	1.48
23308184--23308240	27	2.0	29	90	6	91	45	7	24	22	1.77
23308291--23308327	13	2.9	13	84	15	51	21	0	8	70	1.13
23308765--23308810	19	2.5	19	76	16	51	15	17	6	60	1.55
23309462--23309501	19	2.2	19	86	8	57	22	12	7	57	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23309462--23309495	18	1.9	17	88	5	50	23	14	5	55	1.61
23309471--23309509	19	2.0	20	85	5	53	20	20	5	53	1.64
23311614--23311732	40	3.0	40	76	5	114	31	19	26	22	1.98
23312251--23312345	21	4.5	20	75	9	82	22	2	27	48	1.62
23312684--23312711	14	2.0	14	100	0	56	50	0	0	50	1.00
23313758--23313787	11	2.9	10	90	9	51	30	0	30	40	1.57
23313785--23313871	36	2.4	36	98	0	165	22	14	17	44	1.85
23317365--23317408	20	2.1	22	87	8	65	40	9	0	50	1.34
23317841--23317887	20	2.3	21	88	3	69	42	8	0	48	1.33
23317338--23318340	121	8.3	120	91	2	1566	40	8	3	47	1.51
23318316--23318374	27	2.0	30	87	12	88	40	3	0	55	1.16
23318294--23318358	34	1.9	34	93	0	112	36	3	0	60	1.13
23318329--23318399	21	3.0	22	80	14	72	43	4	0	52	1.20
23318326--23318379	27	2.0	27	92	3	92	42	3	0	53	1.18
23318359--23318409	19	2.5	20	84	6	59	49	3	1	45	1.32
23318557--23318837	52	5.2	52	81	13	338	46	19	0	33	1.53
23318482--23318756	70	4.4	64	76	18	217	46	20	0	32	1.54
23318681--23318837	47	3.2	48	87	9	205	47	18	0	34	1.49
23318482--23318842	9	40.1	9	73	11	224	46	19	0	33	1.55
23324265--23324321	21	2.8	21	81	5	73	38	15	42	3	1.65
23324645--23324758	43	2.6	43	86	4	149	26	18	21	33	1.96
23324688--23324827	70	2.0	70	88	0	208	24	18	22	35	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23324758--23324942	43	4.3	43	70	6	160	25	20	22	32	1.98
23328901--23328989	42	2.1	42	95	0	160	6	28	16	48	1.72
23329525--23329682	26	6.1	26	85	2	192	39	17	17	25	1.91
23329525--23329672	78	1.9	78	87	0	215	39	17	15	27	1.90
23329911--23329960	26	1.9	26	91	0	82	22	20	20	38	1.94
23330448--23330492	18	2.4	18	85	10	56	40	20	6	33	1.78
23340143--23340184	12	3.4	13	81	18	54	57	0	26	16	1.40
23340143--23340184	18	2.3	19	84	12	52	57	0	26	16	1.40
23341794--23341830	9	4.1	9	92	0	65	45	13	10	29	1.77
23349833--23349904	26	2.7	26	86	2	90	26	25	18	30	1.98
23349971--23350060	27	3.3	27	79	3	110	23	18	17	40	1.92
23353432--23353604	54	3.2	53	79	4	204	43	19	16	19	1.88
23353432--23353605	27	6.4	27	76	9	158	43	19	16	20	1.88
23356334--23356693	27	13.4	27	81	1	339	44	20	16	18	1.87
23356334--23356693	81	4.5	81	81	3	379	44	20	16	18	1.87
23369340--23369385	19	2.3	20	96	3	85	47	17	10	23	1.79
23369946--23370005	26	2.3	26	91	0	93	36	11	15	36	1.83
23371917--23371948	16	2.0	16	100	0	64	12	18	31	37	1.88
23372491--23372914	27	15.7	27	83	4	367	38	17	19	24	1.93
23372914--23372965	26	2.0	26	84	0	68	21	15	21	42	1.89
23372951--23373007	23	2.4	23	85	2	78	26	5	17	50	1.67
23373099--23373163	27	2.4	27	78	14	73	26	24	18	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23373151--23373204	26	2.1	26	92	0	90	20	22	22	35	1.96
23373161--23373216	26	2.2	26	86	0	76	16	23	28	32	1.96
23373207--23373459	32	7.9	32	76	5	197	22	20	19	36	1.95
23387352--23387423	29	2.4	29	86	2	90	54	15	9	20	1.69
23388110--23388393	41	6.9	41	85	1	363	20	19	30	29	1.97
23388739--23388787	14	3.4	14	80	5	62	26	0	34	38	1.57
23388887--23388917	15	2.1	15	94	5	55	22	0	32	45	1.53
23388901--23388993	22	4.2	22	73	16	66	19	1	43	36	1.58
23391371--23391401	6	5.3	6	96	3	55	0	12	0	87	0.55
23394241--23394331	43	2.1	43	87	2	130	34	10	9	45	1.73
23394711--23394996	85	3.4	84	84	6	335	27	19	28	24	1.98
23394734--23394971	127	1.9	129	88	3	365	27	19	28	23	1.99
23394699--23395003	43	7.2	43	82	3	357	26	19	28	25	1.98
23402725--23402781	27	2.2	26	83	3	69	36	22	0	40	1.55
23404572--23404617	21	2.2	20	85	11	58	4	13	32	50	1.61
23408272--23408350	3	27.3	3	81	7	92	64	1	2	31	1.15
23409901--23410368	44	10.7	45	72	14	250	25	22	23	28	1.99
23410734--23410855	44	2.8	44	82	5	149	28	23	17	30	1.97
23410874--23411005	44	3.0	44	69	4	122	21	21	25	30	1.99
23410919--23411053	44	3.1	43	68	4	126	18	25	28	27	1.98
23410866--23411389	88	6.0	88	92	0	823	21	25	26	26	1.99
23415159--23415189	16	1.9	16	100	0	62	25	22	19	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23416547--23416603	26	2.2	26	84	3	71	36	5	15	42	1.70
23421203--23421238	17	2.1	17	100	0	72	22	36	16	25	1.94
23421715--23421757	10	4.1	10	81	6	50	72	13	2	11	1.22
23422013--23422051	14	2.8	14	81	14	53	28	0	5	66	1.12
23422693--23422752	5	12.4	5	83	13	81	58	0	0	41	0.98
23422944--23423010	24	2.6	26	88	6	93	38	8	1	50	1.43
23423157--23423291	4	33.2	4	72	18	77	68	1	29	0	0.98
23423159--23423291	18	6.8	18	68	22	74	69	1	29	0	0.98
23423185--23423355	82	2.1	81	87	9	240	70	1	28	0	0.95
23423185--23423319	44	3.2	44	79	12	165	70	1	28	0	0.96
23423241--23423360	39	3.5	33	78	16	102	70	0	30	0	0.88
23423157--23423359	110	1.8	112	80	14	249	68	0	30	0	0.96
23427224--23427267	22	2.0	22	90	0	70	56	2	4	36	1.32
23433689--23434352	331	2.0	331	99	0	1319	30	19	15	35	1.92
23450514--23450581	31	2.2	31	89	10	104	27	23	8	39	1.84
23450534--23450591	31	1.9	31	89	3	91	25	24	8	41	1.83
23459513--23459551	11	3.6	11	79	6	53	28	2	0	69	1.02
23459511--23459550	21	2.0	20	95	5	71	32	2	0	65	1.06
23460002--23460080	23	3.4	23	80	14	92	20	0	5	74	1.00
23460071--23460129	23	2.5	22	78	10	73	37	0	3	59	1.14
23460326--23460365	18	2.2	18	86	0	53	22	0	2	75	0.93
23460575--23460629	17	3.4	16	74	18	51	20	1	5	72	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23460619--23460685	25	2.6	26	81	13	84	35	0	2	61	1.12
23460619--23460684	26	2.5	27	75	20	77	34	0	3	62	1.11
23461671--23461730	15	3.8	15	74	10	57	50	28	0	21	1.49
23465682--23465752	35	2.0	35	94	0	124	32	9	16	40	1.82
23468653--23468677	13	1.9	13	100	0	50	36	16	0	48	1.46
23471724--23471778	21	2.6	21	80	11	76	27	9	34	29	1.87
23472428--23472460	12	2.8	12	90	4	50	6	18	33	42	1.75
23472961--23472993	12	2.8	12	90	4	50	6	18	33	42	1.75
23472261--23473328	533	2.0	533	99	0	2127	38	17	14	28	1.90
23480254--23480374	63	1.9	63	85	6	165	27	27	21	23	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205