genome.fa.s19.2.7.7.80.10.50.1000.32.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  61124829

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   

This is table  32  of  205  ( 24568 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9652872--9652936	34	1.9	34	100	0	130	29	3	16	50	1.60
9653393--9653462	31	2.3	32	82	7	92	68	1	1	28	1.06
9660938--9660986	25	2.0	25	84	8	64	38	6	0	55	1.25
9671703--9671741	21	2.0	20	90	10	62	15	5	2	76	1.06
9671703--9671742	20	2.0	21	90	5	64	15	5	2	77	1.04
9673160--9673211	21	2.6	19	70	21	52	19	28	25	26	1.98
9675564--9675609	23	2.0	22	91	4	74	45	10	19	21	1.80
9687192--9687230	14	2.7	15	88	8	62	33	15	0	51	1.44
9687177--9687225	14	3.4	14	83	5	62	32	10	2	55	1.45
9687378--9687415	14	2.5	16	83	12	53	39	0	0	60	0.97
9688111--9688182	18	3.7	18	73	15	56	52	5	1	40	1.33
9700669--9700742	34	2.2	34	95	2	132	45	2	1	50	1.24
9700987--9701050	20	3.0	21	70	9	58	42	0	3	54	1.16
9701843--9701894	26	2.0	26	100	0	104	30	0	19	50	1.48
9705728--9705787	30	2.0	31	83	9	79	41	0	38	20	1.52
9705996--9706032	9	4.1	9	92	0	65	29	10	13	45	1.77
9706629--9706664	11	3.2	11	88	4	54	22	36	0	41	1.54
9707910--9707942	7	4.7	7	100	0	66	27	0	15	57	1.38
9709114--9709370	22	12.1	22	71	13	78	47	29	0	22	1.52
9709180--9709269	35	2.6	34	78	7	92	44	35	0	20	1.51
9709224--9709370	41	3.5	43	78	11	126	46	29	0	23	1.52
9709227--9709369	22	6.8	21	74	13	80	47	29	0	23	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9709227--9709370	64	2.3	63	83	6	166	47	29	0	22	1.51
9709331--9709384	22	2.5	22	75	6	56	51	22	1	24	1.57
9709388--9709590	34	5.4	35	75	17	135	47	29	0	23	1.52
9709431--9709599	21	8.3	21	72	17	99	49	30	0	20	1.49
9709464--9709623	7	22.4	7	68	22	57	48	31	0	20	1.50
9709464--9709601	22	6.4	22	78	11	142	50	31	0	18	1.48
9709450--9709560	15	7.0	15	70	21	66	50	29	0	19	1.48
9709485--9709539	28	1.9	29	88	3	85	50	29	0	20	1.48
9709464--9709623	43	3.7	43	81	10	175	48	31	0	20	1.50
9709558--9709626	28	2.4	29	83	11	97	44	34	0	20	1.52
9709592--9709651	21	2.8	20	80	9	66	41	30	0	28	1.56
9712808--9713244	125	3.5	124	90	1	644	30	23	18	27	1.98
9713833--9713899	28	2.4	28	79	20	77	55	1	1	41	1.18
9713833--9713896	29	2.3	27	82	15	76	56	1	1	40	1.18
9714251--9714323	6	12.3	6	80	8	78	64	4	0	31	1.12
9714244--9714301	24	2.3	25	88	8	91	65	0	0	34	0.93
9723053--9723119	22	3.0	22	72	10	64	37	1	8	52	1.42
9723265--9723297	14	2.4	14	90	5	50	66	0	0	33	0.92
9727854--9727932	41	1.9	41	97	0	149	49	13	5	31	1.64
9727970--9728010	19	2.2	19	95	0	73	46	12	4	36	1.63
9730672--9731010	170	2.0	169	95	0	615	40	13	17	28	1.88
9731397--9731466	32	2.2	32	97	2	131	44	5	18	31	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9731981--9732021	19	2.2	19	100	0	82	43	14	4	36	1.67
9737792--9737822	3	10.3	3	100	0	62	32	0	0	67	0.91
9737823--9737886	31	2.1	31	96	0	119	0	37	4	57	1.19
9744018--9744057	21	1.9	21	100	0	80	32	20	15	32	1.93
9744020--9744066	21	2.2	21	88	0	67	36	23	14	25	1.93
9746282--9746321	18	2.2	18	86	8	55	67	12	0	20	1.22
9747130--9747165	11	3.3	11	88	0	54	44	0	33	22	1.53
9754964--9755009	23	2.0	23	86	0	65	17	4	28	50	1.65
9755746--9755770	12	2.1	12	100	0	50	68	0	16	16	1.22
9756091--9756134	20	2.2	20	84	4	63	38	11	0	50	1.39
9756545--9756585	16	2.5	16	88	4	55	60	0	2	36	1.10
9756543--9756583	18	2.3	19	79	12	50	63	0	2	34	1.08
9756487--9756589	42	2.6	37	73	23	93	56	1	5	35	1.35
9756578--9756603	6	4.3	6	100	0	52	80	0	0	19	0.71
9763112--9763235	55	2.3	55	88	0	176	23	20	35	20	1.96
9764200--9764228	12	2.3	13	94	5	51	82	0	0	17	0.66
9765897--9766012	57	2.0	57	96	0	214	30	4	19	45	1.70
9766731--9766800	26	2.7	25	80	6	86	25	22	24	27	2.00
9782312--9783445	564	2.0	564	92	1	1869	30	17	21	29	1.96
9793246--9793339	46	2.0	46	81	4	109	27	18	25	28	1.98
9794778--9794889	21	5.3	21	65	12	59	14	19	16	49	1.80
9794777--9794989	42	5.0	42	87	0	273	14	21	16	47	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9794853--9794961	21	5.2	21	64	4	76	11	23	18	46	1.81
9794777--9795017	42	5.7	42	84	3	234	14	21	17	46	1.83
9794777--9795015	126	1.9	127	80	2	284	14	21	17	46	1.83
9801059--9801147	30	3.0	29	78	6	90	26	21	28	23	1.99
9801086--9801160	28	2.6	29	85	6	91	26	21	26	25	1.99
9801086--9801173	28	3.1	29	81	6	81	29	19	25	26	1.98
9801281--9801384	26	4.0	26	74	2	93	32	23	24	20	1.98
9801593--9801994	27	14.8	27	82	3	468	23	15	18	42	1.88
9802646--9802670	13	1.9	13	100	0	50	52	0	40	8	1.31
9807581--9807648	28	2.4	28	82	0	82	30	11	25	32	1.91
9815889--9815922	6	5.3	6	86	13	50	29	2	2	64	1.22
9815963--9815997	17	1.9	19	88	11	56	25	11	5	57	1.56
9816994--9817031	20	1.9	20	84	10	51	52	10	5	31	1.58
9817787--9817823	15	2.5	15	100	0	74	5	21	18	54	1.64
9821515--9821548	16	2.2	15	89	5	50	55	0	0	44	0.99
9826375--9826471	42	2.3	42	92	5	162	51	7	34	7	1.57
9835333--9835361	8	3.6	8	100	0	58	65	0	0	34	0.93
9837211--9837251	18	2.3	18	95	0	73	41	14	19	24	1.89
9837959--9838023	27	2.4	27	78	2	76	20	20	16	43	1.89
9841871--9841927	3	19.0	3	88	0	87	33	38	0	28	1.57
9841875--9841936	6	10.3	6	92	0	70	33	43	0	22	1.54
9859529--9860082	267	2.1	266	87	1	777	27	20	25	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9860142--9860250	45	2.4	45	78	1	121	33	21	21	23	1.97
9865997--9866277	134	2.1	134	97	1	539	50	14	12	22	1.76
9877312--9877341	6	5.0	6	100	0	60	66	0	0	33	0.92
9885796--9885998	46	4.3	48	88	7	265	35	14	21	28	1.92
9885730--9885998	98	2.7	98	93	0	457	34	14	22	28	1.93
9885962--9886107	37	4.0	37	93	1	242	36	16	21	24	1.94
9887362--9887505	49	2.9	49	92	1	225	23	13	29	32	1.94
9890697--9890899	46	4.3	48	88	7	265	35	14	21	28	1.92
9890631--9890899	98	2.7	98	93	0	457	34	14	22	28	1.93
9890863--9891008	37	4.0	37	93	1	242	36	16	21	24	1.94
9892263--9892406	49	2.9	49	92	1	225	23	13	29	32	1.94
9895598--9895800	46	4.3	48	88	7	265	35	14	21	28	1.92
9895532--9895800	98	2.7	98	93	0	457	34	14	22	28	1.93
9895764--9895909	37	4.0	37	93	1	242	36	16	21	24	1.94
9907073--9907103	15	2.1	15	94	5	55	22	0	6	70	1.09
9912256--9912326	35	2.0	35	100	0	142	28	15	22	33	1.95
9913728--9913776	21	2.3	21	85	0	80	20	26	34	18	1.95
9919560--9919589	5	6.0	5	100	0	60	20	60	20	0	1.37
9931939--9932024	43	2.0	43	93	0	145	38	4	12	44	1.64
9935005--9935121	54	2.2	54	80	6	121	21	28	30	19	1.98
9958955--9959138	91	2.0	91	100	0	368	47	23	8	20	1.78
9959360--9959405	5	9.2	5	100	0	92	39	19	0	41	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9961241--9961273	17	1.9	18	88	11	52	48	0	9	42	1.35
9966527--9966559	12	2.8	12	100	0	66	18	24	0	57	1.40
9967383--9967571	47	3.9	48	77	10	170	28	13	24	32	1.94
9975417--9975451	18	2.0	17	88	5	52	34	0	5	60	1.21
9976469--9976530	3	20.3	3	75	15	56	61	4	1	32	1.27
9976470--9976528	19	3.0	20	76	13	68	62	5	1	30	1.26
9976470--9976530	14	4.7	13	77	15	56	62	4	1	31	1.26
9976469--9976529	11	5.9	10	78	16	54	62	4	1	31	1.26
9978145--9979036	132	6.8	132	88	3	1161	28	24	18	28	1.98
9978170--9979036	265	3.3	263	84	4	1135	28	24	18	28	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205