genome.fa.s19.2.7.7.80.10.50.1000.112.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  61124829

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   

This is table  112  of  205  ( 24568 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33527379--33527563	79	2.3	81	84	7	236	24	22	27	25	2.00
33527380--33527563	40	4.6	40	83	9	216	24	22	27	25	2.00
33527432--33527596	79	2.1	79	84	6	210	26	21	27	25	1.99
33537209--33537552	173	2.0	173	97	0	643	40	24	11	23	1.87
33537559--33537673	27	4.3	27	82	6	108	24	20	20	34	1.96
33537658--33538060	27	15.1	27	77	8	243	33	7	23	35	1.83
33537657--33537865	53	3.9	53	79	3	233	28	8	22	39	1.84
33539278--33539364	6	14.3	6	71	20	65	48	13	18	19	1.81
33539287--33539364	30	2.5	31	87	6	106	48	12	19	19	1.80
33539780--33539895	27	4.3	27	80	8	128	25	20	17	36	1.94
33539768--33539882	54	2.1	54	82	3	133	27	20	20	31	1.97
33539780--33539893	54	2.1	54	86	3	158	26	21	17	35	1.95
33539875--33540014	54	2.6	54	81	3	174	32	7	21	37	1.82
33539875--33540002	27	4.7	27	77	0	130	31	7	21	39	1.81
33541839--33542007	46	3.6	46	79	9	166	23	27	18	30	1.98
33562566--33562668	53	1.9	53	84	0	134	18	25	20	35	1.95
33578127--33578227	29	3.5	29	89	1	150	26	14	28	29	1.95
33589653--33589739	27	3.2	27	86	0	120	34	19	19	26	1.96
33589653--33589756	54	1.9	54	82	3	129	33	17	20	28	1.95
33589990--33590409	211	2.0	211	94	0	732	29	14	27	29	1.95
33590593--33590654	31	2.0	31	83	3	79	20	20	20	37	1.95
33596223--33596301	27	2.9	27	86	0	113	36	17	18	26	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33596971--33597200	67	3.3	66	84	6	262	19	26	23	30	1.98
33597060--33597200	76	1.9	76	88	5	214	20	26	23	29	1.99
33602072--33602101	15	2.0	15	100	0	60	20	20	20	40	1.92
33605658--33605822	46	3.6	45	80	9	149	23	29	20	27	1.98
33606189--33606245	30	1.9	30	92	0	96	29	26	10	33	1.90
33609795--33609831	16	2.3	16	100	0	74	5	18	40	35	1.74
33611967--33612124	43	3.7	43	92	0	244	29	20	18	31	1.96
33615101--33615156	23	2.4	22	85	14	69	25	16	19	39	1.91
33615426--33615543	34	3.5	34	74	14	118	24	23	25	26	2.00
33619765--33619834	28	2.5	28	88	9	99	27	14	27	31	1.95
33626828--33626901	27	2.7	27	91	0	121	32	17	13	36	1.89
33627972--33628192	46	4.8	46	88	5	320	28	28	21	20	1.98
33627972--33628196	93	2.4	93	89	3	330	28	28	21	20	1.98
33634150--33634205	11	5.5	11	71	16	57	35	12	19	32	1.89
33634139--33634205	20	3.3	20	93	0	116	34	11	20	32	1.90
33634255--33634373	24	5.0	24	87	5	161	29	22	21	26	1.99
33634255--33634374	47	2.5	47	89	6	170	30	22	21	25	1.99
33634567--33634630	31	2.1	31	90	0	101	35	15	23	25	1.94
33641769--33641816	25	1.9	25	86	0	69	33	25	16	25	1.96
33641864--33641919	11	5.5	11	71	16	57	35	12	19	32	1.89
33641853--33641919	20	3.3	20	93	0	116	34	11	20	32	1.90
33641969--33642158	24	8.0	24	90	4	296	29	22	21	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33641969--33642137	47	3.6	47	92	1	284	30	21	20	27	1.98
33641968--33642158	71	2.7	72	91	4	307	29	21	20	27	1.98
33642352--33642415	31	2.1	31	90	0	101	35	15	23	25	1.94
33646266--33646398	41	3.2	41	87	5	169	36	23	15	24	1.93
33648276--33648782	49	10.6	49	95	3	860	32	8	29	29	1.86
33648276--33648782	145	3.5	143	95	3	862	32	8	29	29	1.86
33661883--33661920	19	2.0	19	85	10	51	18	10	0	71	1.14
33667130--33667314	79	2.3	82	84	7	238	25	27	22	24	2.00
33667111--33667314	40	5.1	40	82	8	238	25	27	22	25	2.00
33671985--33672129	40	3.7	40	81	10	172	24	27	23	24	2.00
33679258--33679320	21	3.2	21	65	21	64	31	7	23	36	1.84
33683486--33683548	21	3.2	21	65	21	64	31	7	23	36	1.84
33689437--33689503	33	2.0	33	82	5	82	32	7	22	37	1.82
33697274--33697528	47	5.4	47	90	2	363	28	29	7	33	1.85
33701489--33703197	40	43.6	40	94	4	2959	25	30	22	22	1.99
33701774--33701829	28	2.0	28	96	0	103	25	26	21	26	1.99
33701882--33701937	28	2.0	28	96	0	103	25	26	21	26	1.99
33701990--33702045	28	2.0	28	96	0	103	25	26	21	26	1.99
33712388--33712446	30	2.0	30	82	0	73	28	23	8	38	1.84
33716400--33716553	43	3.6	42	81	8	159	33	25	17	24	1.96
33719158--33719182	13	1.9	13	100	0	50	60	16	0	24	1.36
33723286--33723517	40	5.8	40	85	5	292	24	21	28	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33724840--33724943	42	2.5	42	93	0	172	29	16	25	28	1.97
33724840--33724965	42	3.0	42	88	5	159	30	15	24	29	1.96
33725852--33725908	24	2.5	21	76	17	60	24	3	26	45	1.69
33732162--33732239	29	2.7	28	84	11	104	25	14	30	29	1.94
33732192--33732519	174	1.9	174	96	0	602	30	14	24	31	1.94
33735724--33735975	55	4.7	54	80	5	230	35	17	25	21	1.95
33735731--33735928	108	1.8	110	87	4	303	34	16	25	23	1.95
33736167--33736197	16	1.9	16	93	0	53	41	0	22	35	1.54
33739118--33739226	42	2.6	42	83	1	137	32	22	16	28	1.96
33739109--33739270	43	3.8	42	77	11	141	31	24	19	25	1.98
33740114--33740158	20	2.3	20	96	3	83	17	11	8	62	1.53
33744331--33744506	43	4.0	43	70	14	110	31	25	14	28	1.95
33748744--33748785	18	2.1	21	87	12	63	57	28	4	9	1.51
33754597--33754664	34	2.0	34	100	0	136	41	23	5	29	1.78
33759858--33759899	20	2.1	20	95	0	75	30	21	16	30	1.95
33767808--33767924	42	2.8	42	74	11	105	52	9	3	34	1.50
33770907--33770985	24	3.3	24	65	16	56	18	27	20	32	1.96
33772330--33772584	55	4.8	53	79	9	247	36	17	25	21	1.94
33772337--33772537	108	1.8	110	89	4	318	34	17	25	22	1.95
33780062--33780317	55	4.8	55	83	8	300	35	16	25	22	1.94
33780069--33780319	108	2.4	110	84	9	342	35	16	25	23	1.95
33780508--33780538	16	1.9	16	93	0	53	41	0	22	35	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33785240--33785363	42	3.0	42	80	4	133	43	14	24	17	1.86
33785312--33785373	21	3.0	20	79	6	70	41	12	24	20	1.87
33785367--33785464	46	2.1	46	96	0	178	44	18	19	17	1.87
33789948--33790005	29	2.0	29	96	0	107	20	29	10	39	1.86
33793474--33793566	34	2.8	32	81	13	109	69	2	23	4	1.17
33798528--33798557	12	2.5	12	88	0	51	73	0	0	26	0.84
33807212--33807243	16	2.0	16	93	0	55	62	3	0	34	1.11
33808502--33808534	17	2.1	16	88	11	50	30	0	0	69	0.88
33808580--33808638	21	2.8	22	85	7	70	23	0	6	69	1.12
33808609--33808668	26	2.4	24	83	8	75	28	0	3	68	1.05
33830424--33830471	24	2.0	24	95	0	87	37	14	4	43	1.65
33831023--33831050	10	2.8	10	100	0	56	71	7	10	10	1.31
33831699--33831750	25	2.1	25	85	0	68	38	15	9	36	1.80
33847736--33847812	38	2.0	38	89	0	118	42	31	11	14	1.81
33851362--33851391	16	1.9	15	93	6	51	73	10	0	16	1.09
33858201--33858240	6	6.5	6	82	5	53	80	2	2	15	0.93
33860792--33861013	28	7.9	28	93	0	381	26	13	27	33	1.93
33860767--33861013	56	4.4	56	94	0	395	25	12	27	33	1.93
33860767--33861013	84	2.9	84	90	0	386	25	12	27	33	1.93
33863676--33863721	18	2.6	18	96	0	83	8	13	26	52	1.69
33863694--33863738	18	2.5	18	88	0	63	11	15	22	51	1.75
33874862--33874932	34	2.1	34	100	0	142	23	19	9	46	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33878809--33878855	23	2.0	23	83	0	58	23	31	8	36	1.85
33880793--33880825	17	1.9	17	100	0	66	30	0	15	54	1.41
33883004--33883038	18	1.9	18	100	0	70	0	11	31	57	1.34
33887780--33887981	29	7.0	29	81	7	164	39	23	14	22	1.91
33887798--33887981	58	3.2	58	82	2	228	38	24	15	21	1.92
33887782--33887989	87	2.4	85	84	6	274	38	24	13	23	1.91
33888826--33888858	13	2.6	13	90	4	50	48	12	0	39	1.40
33891763--33891821	17	3.5	17	77	11	50	79	0	6	13	0.92
33891753--33891837	6	13.7	6	76	12	57	78	0	5	15	0.93
33891758--33891835	20	3.8	21	76	15	67	78	0	6	15	0.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205