genome.fa.s19.2.7.7.80.10.50.1000.135.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  61124829

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   

This is table  135  of  205  ( 24568 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40942635--40942827	97	2.0	97	97	0	368	37	12	19	31	1.89
40949519--40949555	19	1.9	19	88	0	56	37	0	2	59	1.12
40949522--40949560	16	2.4	17	82	8	53	35	0	2	61	1.10
40949815--40949848	12	2.8	12	83	16	52	41	0	5	52	1.25
40951666--40951732	35	2.0	32	82	8	80	34	5	16	43	1.72
40952413--40952456	22	2.0	22	100	0	88	13	22	13	50	1.77
40956943--40957165	39	5.7	40	86	7	273	25	22	27	24	2.00
40956943--40957165	79	2.8	81	85	8	282	25	22	27	24	2.00
40956943--40957198	79	3.3	79	82	9	224	26	21	27	24	1.99
40970102--40970160	30	2.0	30	96	0	109	16	22	16	44	1.87
40976226--40976275	21	2.3	22	82	6	66	40	8	32	20	1.81
40976237--40976278	21	2.0	21	95	0	75	40	9	28	21	1.84
40977434--40977489	28	2.0	28	96	0	103	30	3	25	41	1.72
40978080--40978109	15	2.0	15	93	0	51	50	33	13	3	1.58
40982164--40982250	43	2.0	43	95	0	156	26	5	13	54	1.62
40983040--40983082	21	2.0	21	86	8	61	60	0	0	39	0.97
40983125--40983163	16	2.3	16	86	8	51	61	2	0	35	1.10
40983168--40983262	40	2.4	41	77	12	99	46	1	2	50	1.20
40993582--40993724	40	3.5	40	85	4	189	25	25	26	23	2.00
40993580--40993760	40	4.6	40	80	4	188	24	24	26	23	2.00
41000528--41000705	38	4.6	38	86	6	200	22	23	24	29	1.99
41007842--41007871	15	2.0	15	100	0	60	20	20	26	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41009140--41009319	46	3.9	47	79	12	194	22	28	18	30	1.97
41008954--41009322	94	3.9	96	72	14	284	24	28	19	27	1.99
41014366--41014643	38	7.3	38	88	1	403	22	23	24	29	1.99
41014367--41014638	116	2.4	114	91	1	418	22	23	24	29	1.99
41014636--41014717	43	1.9	43	87	0	119	14	25	31	28	1.95
41018000--41018033	17	1.9	17	88	5	50	11	26	41	20	1.87
41022135--41022195	27	2.3	27	88	0	86	36	14	19	29	1.92
41022430--41022472	22	2.0	22	85	0	59	13	25	23	37	1.92
41023960--41023985	7	3.7	7	100	0	52	30	0	42	26	1.56
41028493--41028651	41	3.9	40	88	1	210	25	16	25	32	1.97
41028493--41028651	81	2.0	81	84	2	212	25	16	25	32	1.97
41028493--41028676	81	2.3	81	82	1	190	24	17	26	31	1.97
41030666--41030823	43	3.7	44	81	4	160	22	17	27	31	1.97
41032671--41032799	27	4.8	27	87	0	170	29	20	8	41	1.82
41032671--41032799	54	2.4	54	88	1	188	29	20	8	41	1.82
41032792--41033025	27	8.7	27	82	7	280	42	20	7	29	1.80
41032792--41033024	81	2.9	80	87	4	335	42	21	7	28	1.80
41032779--41033138	27	13.3	27	76	9	259	39	20	9	30	1.84
41033169--41033256	27	3.3	27	85	3	88	36	18	25	20	1.95
41033182--41033260	27	2.9	27	85	7	99	34	20	25	20	1.96
41034059--41034194	52	2.7	51	93	5	224	28	22	22	26	1.99
41034059--41034194	26	5.3	26	87	3	190	28	22	22	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41034400--41034602	31	6.5	31	94	0	361	29	17	24	28	1.97
41034400--41034642	93	2.7	92	87	5	273	30	18	24	26	1.98
41036931--41037278	47	7.4	47	96	0	615	32	8	30	29	1.87
41037798--41037884	44	2.0	44	97	0	165	18	24	12	44	1.84
41039385--41039458	29	2.6	29	89	4	105	25	16	32	25	1.96
41039769--41039989	40	5.5	40	81	4	234	24	23	27	24	2.00
41044964--41045042	37	2.1	37	86	4	106	26	18	29	25	1.98
41051633--41051736	44	2.4	43	81	9	115	26	17	25	29	1.97
41051630--41051778	43	3.5	42	77	6	104	28	16	24	30	1.97
41059205--41059418	40	5.4	40	90	1	324	25	26	22	25	2.00
41067376--41068378	40	25.1	40	97	0	1792	29	25	20	25	1.99
41068759--41068848	45	2.0	45	95	0	162	32	27	10	30	1.89
41088675--41088733	17	3.6	17	81	4	59	38	35	18	6	1.78
41101951--41102762	44	18.8	44	70	14	426	29	20	22	27	1.98
41102037--41102761	89	8.4	87	68	15	380	29	20	22	28	1.98
41101952--41102738	217	3.6	217	92	1	1256	29	20	21	28	1.98
41102079--41102404	173	1.9	173	79	11	373	30	20	20	27	1.98
41103222--41103280	17	3.6	17	81	4	59	38	35	18	6	1.78
41115562--41115598	16	2.5	15	87	12	58	48	13	8	29	1.71
41115569--41115602	16	2.1	16	100	0	68	50	11	5	32	1.63
41121361--41121572	47	4.5	47	86	3	266	29	31	8	30	1.87
41121454--41121533	25	3.3	25	65	16	69	32	31	5	31	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41121362--41121573	94	2.3	94	88	1	309	29	31	8	30	1.87
41134695--41134912	29	7.5	29	78	5	154	35	11	28	24	1.90
41138561--41138645	30	2.8	30	82	7	109	22	18	21	37	1.94
41149196--41149633	50	8.7	50	86	3	522	23	29	20	27	1.98
41165387--41165610	111	2.0	112	92	1	378	31	17	14	35	1.91
41168187--41168310	50	2.5	49	77	5	122	28	19	29	23	1.98
41177431--41177534	42	2.5	42	93	0	172	29	16	25	28	1.97
41177431--41177556	42	3.0	42	88	5	159	30	15	24	29	1.96
41178443--41178499	24	2.5	21	76	17	60	24	3	26	45	1.69
41184753--41184830	29	2.7	28	84	11	104	25	14	30	29	1.94
41184783--41185110	174	1.9	174	96	0	602	30	14	24	31	1.94
41188269--41188491	50	4.5	50	75	7	229	30	22	25	21	1.98
41188365--41188532	49	3.4	49	76	8	207	34	20	21	23	1.97
41188325--41188546	99	2.2	99	100	0	444	32	20	23	22	1.98
41189412--41189451	21	1.9	21	84	0	53	47	7	12	32	1.69
41192703--41192952	40	6.3	40	90	3	292	24	21	28	26	1.99
41192650--41192952	80	3.8	79	84	3	342	25	21	27	26	1.99
41192650--41192952	120	2.5	119	83	3	358	25	21	27	26	1.99
41200695--41200904	40	5.3	39	89	4	242	25	21	27	25	1.99
41200642--41200904	120	2.2	120	82	4	309	25	21	27	25	1.99
41200643--41200939	80	3.7	80	81	6	230	26	21	27	24	1.99
41202777--41202889	28	4.0	28	87	6	167	30	23	22	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41202736--41202892	56	2.7	59	81	12	180	29	22	22	24	1.99
41202777--41202889	56	2.0	56	93	3	192	30	23	22	23	1.99
41202987--41203069	26	3.2	26	79	5	96	32	25	24	18	1.97
41203305--41203577	81	3.4	81	90	3	410	19	17	19	42	1.89
41203304--41203577	27	10.2	27	85	1	354	19	17	20	42	1.89
41203744--41203785	20	2.2	20	86	4	59	23	42	21	11	1.86
41209310--41209339	16	1.9	16	93	6	53	50	20	0	30	1.49
41214929--41214998	36	1.9	36	86	11	99	40	4	0	55	1.19
41220387--41220486	48	2.1	48	96	0	182	33	25	14	28	1.94
41221771--41222065	51	5.8	50	78	6	290	29	27	15	27	1.96
41221771--41222065	102	2.9	102	89	0	412	29	27	15	27	1.96
41221772--41222061	153	1.9	151	80	6	343	30	27	15	27	1.96
41226997--41227192	100	2.0	100	95	0	356	37	10	22	28	1.88
41234285--41234446	81	2.0	81	90	0	252	35	17	9	37	1.82
41234721--41234874	45	3.3	45	70	18	152	43	12	5	37	1.67
41234693--41234883	95	2.0	95	98	0	373	44	13	4	37	1.65
41234913--41234987	38	2.0	38	97	0	141	36	13	20	30	1.91
41241764--41241800	12	3.2	11	92	7	56	21	8	2	67	1.29
41244292--41244344	27	1.9	28	84	3	72	71	5	22	0	1.06
41252047--41252329	90	3.1	90	100	0	566	30	16	17	35	1.92
41252416--41252462	23	2.1	23	84	7	62	51	12	4	31	1.59
41252975--41253089	57	2.0	57	98	0	221	48	22	13	15	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41259187--41259350	43	3.9	43	76	7	131	28	29	18	23	1.97
41259187--41259306	43	2.8	43	84	3	145	25	30	18	25	1.98
41260684--41260721	15	2.4	17	86	8	53	68	2	0	28	1.03
41263614--41263648	12	2.9	12	91	0	52	42	31	5	20	1.75
41265448--41265485	15	2.6	16	84	16	55	39	34	0	26	1.57
41265459--41265500	14	2.9	15	86	10	52	35	38	0	26	1.57
41265450--41265563	49	2.3	51	85	8	155	37	37	0	24	1.56
41265729--41265790	21	2.9	21	82	4	61	37	40	0	22	1.54
41266101--41266295	41	4.8	41	88	0	282	34	24	20	21	1.97
41270219--41270612	44	8.9	42	72	15	152	29	22	17	30	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205