genome.fa.s19.2.7.7.80.10.50.1000.192.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  61124829

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   

This is table  192  of  205  ( 24568 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56985366--56985431	21	3.1	21	82	0	78	33	12	45	9	1.73
56985741--56986104	43	8.6	43	87	1	423	23	21	24	30	1.99
56989282--56989320	18	2.2	18	100	0	78	28	15	10	46	1.78
56989715--56989778	23	2.7	23	71	17	60	14	12	9	64	1.50
56993295--56993387	28	3.4	28	73	4	73	17	2	34	46	1.60
57002151--57002305	66	2.3	66	89	0	247	32	25	15	27	1.95
57002289--57002345	29	2.0	29	89	0	87	29	14	21	35	1.92
57002235--57002411	95	1.9	95	86	2	257	31	20	15	32	1.93
57002338--57002460	65	1.9	65	82	1	156	26	20	16	36	1.93
57005150--57005178	6	4.8	6	100	0	58	65	17	0	17	1.27
57005213--57005293	9	8.9	9	81	6	74	28	12	19	39	1.88
57005218--57005293	18	4.2	18	86	6	100	28	11	19	39	1.87
57005218--57005293	27	2.8	27	78	11	84	28	11	19	39	1.87
57006634--57006719	34	2.4	35	86	7	104	46	0	2	51	1.13
57006648--57006719	34	2.1	35	92	2	119	48	0	0	51	1.00
57006652--57006721	11	6.2	12	72	22	53	47	0	0	52	1.00
57006662--57006720	23	2.6	23	81	7	68	44	0	0	55	0.99
57006672--57006723	12	4.4	12	73	22	56	44	0	0	55	0.99
57009297--57009350	24	2.3	23	80	6	63	38	3	20	37	1.70
57009553--57009588	19	1.9	19	88	5	56	13	11	0	75	1.06
57009848--57009919	31	2.3	31	97	0	135	37	16	15	30	1.90
57011422--57011464	23	2.0	21	86	9	59	58	4	30	6	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57012551--57012593	23	2.0	21	86	9	59	58	4	30	6	1.45
57017491--57017533	23	2.0	21	86	9	59	58	4	30	6	1.45
57026048--57026168	46	2.7	46	79	3	147	19	14	16	50	1.78
57027268--57027292	13	1.9	13	100	0	50	28	16	0	56	1.41
57028862--57029067	32	6.8	32	74	14	148	27	2	17	51	1.60
57028867--57029067	91	2.2	91	94	1	350	27	2	17	51	1.60
57028908--57029060	59	2.5	59	78	9	164	26	3	18	51	1.63
57031274--57031381	44	2.5	44	78	3	137	20	14	13	50	1.77
57040356--57040463	21	5.1	21	83	0	81	36	18	41	3	1.68
57040375--57040463	42	2.1	42	82	0	106	35	17	42	3	1.66
57040741--57041088	43	8.1	43	75	7	296	22	19	31	27	1.98
57040742--57041003	87	3.0	86	87	2	357	22	17	32	27	1.96
57041173--57041215	22	2.0	22	85	0	59	44	25	18	11	1.84
57042033--57042066	9	3.7	9	88	4	50	67	0	0	32	0.91
57042372--57042420	17	2.9	16	84	6	53	51	2	0	46	1.12
57044419--57044608	98	1.9	98	91	0	308	27	11	23	37	1.89
57048098--57048270	87	2.0	87	98	0	337	32	24	21	21	1.98
57060168--57061009	44	19.2	44	62	16	145	30	19	24	25	1.98
57060118--57061276	132	8.8	132	93	0	1852	31	19	24	25	1.98
57061094--57061299	44	4.7	44	68	7	130	31	18	23	26	1.98
57061243--57061336	44	2.1	44	84	2	116	28	20	26	24	1.99
57061266--57061377	44	2.6	42	83	8	127	28	20	21	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57063307--57063496	98	1.9	98	91	0	308	27	10	23	38	1.87
57070240--57070275	15	2.5	15	90	4	56	25	8	0	66	1.19
57071199--57071359	68	2.4	68	84	3	200	26	14	28	30	1.95
57076451--57076490	20	2.0	20	90	9	64	47	0	12	40	1.41
57076606--57076656	12	4.3	12	82	5	50	66	1	3	27	1.20
57081897--57081946	24	2.1	24	80	0	64	50	6	8	36	1.57
57081986--57082022	16	2.3	16	95	0	65	37	2	0	59	1.12
57082025--57082067	18	2.5	17	77	7	50	81	2	11	4	0.93
57082088--57082112	13	1.9	13	100	0	50	72	0	24	4	1.02
57083019--57083075	22	2.6	23	86	8	82	12	26	19	42	1.86
57084533--57084684	27	5.7	27	82	3	182	19	14	22	44	1.86
57084520--57084646	27	4.8	26	84	6	141	19	16	22	41	1.90
57084532--57084673	54	2.7	53	90	2	214	19	14	23	42	1.88
57088921--57089047	27	4.8	27	80	5	152	24	16	17	41	1.89
57096863--57096896	18	1.9	17	88	5	50	61	14	5	17	1.52
57097194--57097237	16	2.8	15	86	13	54	59	6	0	34	1.24
57097283--57097337	28	2.0	28	82	7	67	61	0	5	32	1.19
57097370--57097422	26	2.0	24	82	13	61	54	0	9	35	1.33
57097622--57097663	3	13.7	3	80	14	50	61	0	2	35	1.09
57097626--57097663	14	2.7	14	95	0	67	60	0	2	36	1.11
57097622--57097663	17	2.5	17	85	11	59	61	0	2	35	1.09
57098453--57098486	16	2.2	15	89	5	50	0	11	5	82	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57115233--57115306	22	3.2	21	74	25	69	32	1	0	66	1.00
57115200--57115323	58	2.1	58	83	5	151	33	2	0	62	1.14
57115854--57115890	19	1.9	19	88	0	56	62	0	5	32	1.18
57117168--57117197	15	2.0	15	100	0	60	20	20	26	33	1.97
57117216--57117375	43	3.7	43	89	0	239	23	31	20	25	1.98
57117347--57117407	29	2.1	28	93	3	104	21	31	26	21	1.98
57117306--57117447	72	2.0	72	88	0	212	23	29	21	25	1.99
57117376--57117470	43	2.2	43	90	0	154	23	31	18	26	1.98
57117261--57117470	115	1.8	115	88	0	321	22	31	20	25	1.98
57117976--57118037	25	2.4	26	89	2	90	40	1	14	43	1.55
57117976--57118047	17	4.2	17	72	13	58	40	1	13	44	1.53
57118140--57118199	17	3.5	17	80	8	68	36	0	16	46	1.47
57118143--57118199	9	6.8	8	80	7	60	33	0	17	49	1.47
57118151--57118323	46	3.6	46	72	13	159	34	0	17	47	1.53
57118143--57118228	17	4.8	17	73	16	66	34	0	16	48	1.46
57118167--57118323	53	2.9	54	72	14	128	34	0	17	47	1.53
57119520--57119566	21	2.2	21	84	0	58	46	0	12	40	1.42
57121383--57122268	199	4.5	199	88	2	1275	27	24	17	30	1.97
57122385--57122480	46	2.1	47	86	2	131	42	2	10	44	1.50
57122495--57122543	9	5.4	9	88	9	73	30	8	0	61	1.25
57122493--57122548	17	3.2	18	87	10	80	33	7	0	58	1.25
57122505--57122548	8	5.2	8	86	13	54	34	9	0	56	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57122537--57122591	21	2.7	20	71	23	51	41	7	1	49	1.41
57122640--57122897	83	3.0	84	80	12	290	43	25	2	28	1.69
57122640--57122860	83	2.6	83	90	5	327	44	23	2	29	1.65
57122878--57122911	7	4.9	7	85	0	50	29	50	0	20	1.49
57122789--57123001	102	2.1	104	84	5	272	41	28	2	28	1.68
57122780--57123001	103	2.2	103	82	4	279	41	28	2	27	1.68
57122996--57123049	26	2.1	26	85	0	72	31	44	0	24	1.54
57122980--57123061	14	5.9	14	77	7	69	34	41	1	23	1.62
57123012--57123061	7	7.4	7	80	8	50	36	42	0	22	1.54
57123084--57123116	14	2.3	15	94	5	59	36	33	0	30	1.58
57123664--57124218	114	4.9	114	90	1	864	26	26	22	24	2.00
57125112--57125171	22	2.8	21	75	12	59	38	3	8	50	1.49
57125325--57125385	31	2.0	30	84	12	79	24	18	16	40	1.90
57125481--57125518	17	2.2	17	100	0	76	31	5	5	57	1.43
57125564--57125627	22	3.0	22	79	2	58	70	1	18	9	1.22
57130643--57130881	42	5.7	42	85	4	259	46	15	21	17	1.84
57130688--57130881	84	2.3	84	94	0	334	46	14	21	17	1.84
57130624--57130880	21	12.3	21	69	10	143	45	15	21	17	1.85
57132893--57132937	21	2.1	21	88	8	65	31	26	17	24	1.97
57132902--57132948	21	2.2	21	84	0	58	27	31	12	27	1.93
57133037--57133204	71	2.4	71	86	4	223	32	26	13	27	1.93
57135610--57135664	27	2.0	27	92	0	92	38	29	10	21	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57138107--57138178	6	11.5	6	76	16	58	79	5	4	11	1.04
57139839--57139895	21	2.7	20	77	20	62	71	0	3	24	1.01
57139839--57139874	17	2.1	18	89	5	56	72	0	2	25	0.98
57139845--57139902	29	2.0	30	86	10	84	72	0	3	24	1.00
57151958--57151999	20	2.0	21	95	4	77	50	4	14	30	1.63
57158935--57159021	37	2.4	37	92	1	149	40	27	13	18	1.88
57162553--57162654	47	2.2	46	80	5	116	25	20	18	35	1.95
57166744--57167105	91	4.0	91	99	0	706	41	13	19	25	1.88
57167777--57167856	25	3.3	26	76	16	100	8	16	27	47	1.76
57167802--57167870	22	3.0	22	74	12	66	14	17	26	42	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205