genome.fa.s19.2.7.7.80.10.50.1000.197.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  61124829

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   

This is table  197  of  205  ( 24568 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58287208--58287337	42	3.2	41	90	4	201	33	20	29	17	1.95
58287528--58287558	13	2.3	14	94	5	55	41	6	0	51	1.27
58295608--58295642	13	2.6	13	90	4	52	17	2	5	74	1.14
58299523--58299792	134	2.0	133	89	0	414	34	25	17	22	1.96
58304602--58304927	54	6.2	54	92	4	508	29	15	18	37	1.91
58305513--58305560	25	1.9	25	95	0	87	29	31	10	29	1.90
58305977--58306123	15	9.4	16	81	15	175	55	21	8	14	1.64
58305971--58306138	15	11.0	14	80	16	174	54	21	7	16	1.67
58305970--58306139	32	5.5	31	88	6	208	54	21	7	17	1.67
58306193--58306220	8	3.5	8	100	0	56	50	35	14	0	1.43
58306573--58306645	36	2.1	34	82	10	85	16	0	34	49	1.46
58313714--58313781	30	2.3	30	84	5	84	47	5	19	27	1.72
58315940--58316214	46	6.0	46	98	0	496	40	14	22	22	1.90
58320498--58320669	46	3.7	46	92	1	256	41	13	23	20	1.88
58325489--58325556	20	3.5	19	74	18	59	61	0	16	22	1.34
58326856--58329412	443	5.9	441	87	4	3341	43	13	9	33	1.76
58328873--58328917	23	2.0	23	86	8	65	55	6	0	37	1.26
58326882--58329364	883	2.9	864	86	5	3202	43	13	9	33	1.76
58335462--58335554	18	5.2	18	90	0	150	31	16	24	27	1.96
58335462--58335554	36	2.6	36	94	0	168	31	16	24	27	1.96
58338037--58338138	26	3.9	26	72	16	86	31	5	4	57	1.44
58338034--58338134	52	1.9	53	80	11	118	31	5	3	58	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58338065--58338118	29	1.9	29	85	7	76	33	3	3	59	1.33
58341651--58346465	439	11.0	438	91	3	7181	42	13	9	34	1.76
58350042--58350082	21	2.0	21	90	0	64	19	29	21	29	1.98
58368606--58368651	20	2.3	20	96	0	83	47	8	30	13	1.72
58370985--58371054	18	3.9	18	88	0	95	37	20	7	35	1.80
58373768--58373809	22	1.9	22	95	0	75	19	14	23	42	1.87
58377882--58377933	24	2.2	24	82	6	61	40	3	9	46	1.55
58381604--58381707	32	3.2	32	91	6	165	57	20	3	18	1.55
58386197--58386599	202	2.0	202	90	0	628	39	8	17	33	1.81
58387680--58387861	46	4.0	46	91	1	267	40	14	23	21	1.90
58396908--58396982	33	2.3	33	90	0	123	6	18	13	61	1.53
58396923--58396977	18	3.2	17	71	23	53	7	14	16	61	1.54
58397095--58400074	808	3.7	808	99	0	5951	31	16	13	39	1.86
58400199--58400249	18	3.0	18	81	18	65	45	0	0	54	0.99
58400199--58400251	16	3.2	16	82	15	56	43	0	0	56	0.99
58400212--58400253	16	2.6	16	88	7	59	47	0	0	52	1.00
58400229--58400262	16	2.1	16	88	0	50	44	0	2	52	1.16
58400469--58400521	16	3.2	16	86	2	70	35	32	1	30	1.69
58400618--58400656	18	2.2	18	95	0	69	7	25	17	48	1.74
58400645--58400814	72	2.3	74	84	5	211	20	12	34	32	1.90
58404021--58404177	51	3.1	51	96	1	280	45	7	31	15	1.72
58406360--58406408	23	2.1	23	92	0	80	18	44	6	30	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58406373--58406406	17	2.0	17	88	0	50	17	52	2	26	1.58
58416759--58416785	13	2.1	13	100	0	54	25	7	0	66	1.17
58419982--58420014	15	2.2	15	89	10	50	63	6	24	6	1.40
58423620--58423684	21	3.2	21	72	12	73	40	20	26	13	1.89
58423606--58423702	39	2.5	39	93	0	158	37	23	24	14	1.92
58431336--58431745	69	5.9	69	78	3	358	35	19	22	22	1.96
58431336--58431752	138	3.0	135	81	4	449	35	19	22	22	1.96
58434576--58434653	40	2.0	40	86	0	111	29	19	35	15	1.92
58435291--58435316	3	8.7	3	100	0	52	30	0	0	69	0.89
58436831--58436873	21	2.0	21	100	0	86	27	18	18	34	1.95
58439450--58439496	22	2.1	22	84	7	60	36	6	6	51	1.53
58454605--58454641	18	2.1	18	100	0	74	27	27	16	29	1.97
58466509--58466543	16	2.1	17	89	5	54	62	2	2	31	1.24
58468366--58468397	11	2.9	11	100	0	64	25	28	0	46	1.53
58472369--58472425	28	2.0	28	96	0	105	38	21	5	35	1.76
58476767--58476802	9	4.0	9	92	0	63	22	22	13	41	1.89
58476763--58476801	18	2.2	18	100	0	78	23	20	17	38	1.93
58476889--58476959	3	23.7	3	88	5	108	4	32	0	63	1.14
58476874--58476960	18	4.8	18	86	0	120	9	31	0	59	1.28
58486106--58486167	27	2.3	26	76	13	63	48	11	1	38	1.49
58489206--58489275	33	2.1	33	86	0	95	35	2	38	22	1.69
58492459--58492497	20	1.9	21	89	5	62	58	2	17	20	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58493461--58493979	189	2.7	189	91	0	840	31	19	19	30	1.96
58499811--58499854	16	2.7	16	82	3	52	4	22	2	70	1.17
58502680--58502704	12	2.1	12	100	0	50	24	36	24	16	1.94
58502865--58502907	9	4.8	9	94	0	77	37	30	9	23	1.86
58503509--58503561	27	2.0	27	92	0	88	37	13	18	30	1.89
58503851--58503881	14	2.2	14	100	0	62	58	12	19	9	1.62
58505076--58505102	2	13.5	2	100	0	54	48	0	0	51	1.00
58505487--58505534	16	3.1	16	75	6	53	52	2	0	45	1.12
58505574--58505625	8	6.3	9	72	18	51	67	0	0	32	0.91
58505585--58505638	15	3.5	16	80	12	60	68	0	0	31	0.90
58506387--58506436	23	2.2	23	86	10	68	58	0	8	34	1.28
58511260--58511430	61	2.8	61	79	5	193	30	0	28	40	1.57
58514639--58514710	36	2.0	36	91	0	117	25	0	47	27	1.52
58525620--58525671	20	2.7	19	82	14	70	32	0	1	65	1.04
58525620--58525671	19	2.7	18	80	14	59	32	0	1	65	1.04
58525620--58525673	10	5.5	10	77	20	60	33	0	1	64	1.04
58525809--58525865	16	3.9	15	74	17	57	66	5	0	28	1.13
58529856--58529885	15	2.0	15	93	0	51	56	0	13	30	1.37
58532325--58532501	67	2.6	67	81	7	173	31	16	29	22	1.95
58532349--58532532	67	2.8	64	77	8	194	29	16	30	23	1.96
58537379--58537437	27	2.2	27	93	0	100	37	23	20	18	1.94
58546895--58546933	3	13.0	3	89	10	62	30	2	0	66	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58547363--58547402	18	2.1	20	90	9	66	47	0	0	52	1.00
58549732--58549827	50	1.9	50	93	0	165	28	23	18	29	1.98
58551307--58551428	23	5.1	25	78	11	96	41	20	15	22	1.89
58551322--58551430	23	4.7	23	81	8	112	41	22	16	20	1.90
58551319--58551447	48	2.8	46	83	4	134	41	21	17	19	1.90
58551339--58551446	23	4.6	23	78	8	110	42	22	18	16	1.89
58562257--58562289	3	11.0	3	87	12	50	69	0	0	30	0.88
58562261--58562288	13	2.2	13	100	0	56	71	0	0	28	0.86
58562770--58562823	19	2.8	19	94	0	99	37	16	9	37	1.81
58562747--58562823	38	1.9	41	87	10	115	40	16	7	35	1.78
58572694--58572726	3	11.0	3	100	0	66	66	0	33	0	0.92
58575144--58575212	29	2.4	29	80	14	72	26	2	11	59	1.46
58575329--58575366	20	1.9	20	88	0	58	57	0	2	39	1.12
58575323--58575372	19	2.7	20	75	9	52	64	0	2	34	1.05
58576040--58576072	17	1.9	18	88	11	52	66	0	0	33	0.92
58576547--58576585	3	13.0	3	100	0	78	33	0	0	66	0.92
58580237--58580339	50	2.1	50	96	0	188	30	20	23	26	1.99
58583756--58583783	14	2.0	14	100	0	56	35	21	14	28	1.92
58585959--58585999	21	2.1	19	86	9	55	31	21	12	34	1.91
58607633--58607701	20	3.5	20	81	0	84	24	17	33	24	1.96
58609426--58609486	18	3.4	18	81	0	77	11	18	4	65	1.42
58609502--58609585	36	2.3	36	93	0	141	14	25	1	59	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58610667--58610712	20	2.3	20	92	0	74	15	2	6	76	1.09
58610665--58610714	11	4.7	11	82	9	68	14	2	6	78	1.03
58612117--58612183	20	3.3	20	73	8	73	22	14	35	26	1.93
58615605--58615679	20	3.8	20	78	5	82	26	20	26	26	1.99
58617045--58617088	20	2.2	20	83	0	52	36	13	25	25	1.92
58624244--58624368	54	2.3	53	85	6	162	42	15	12	30	1.83
58626018--58626083	21	3.0	22	86	4	80	30	4	30	34	1.78
58633604--58633642	10	3.7	11	86	10	55	30	12	25	30	1.93
58633604--58633642	21	1.9	20	89	5	60	30	12	25	30	1.93
58640953--58641002	26	1.9	27	84	8	68	56	14	10	20	1.66

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205