genome.fa.s19.2.7.7.80.10.50.1000.161.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  61124829

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   

This is table  161  of  205  ( 24568 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48075362--48075577	109	2.0	109	99	0	423	34	16	18	31	1.93
48083654--48083717	32	2.0	32	100	0	128	37	21	25	15	1.93
48091767--48091810	20	2.2	20	87	0	61	31	34	4	29	1.78
48091767--48091821	20	2.8	20	77	5	58	34	32	3	29	1.75
48096379--48096419	21	2.0	21	85	0	55	41	7	4	46	1.53
48098973--48099074	40	2.6	39	90	7	156	42	2	5	49	1.42
48110091--48110136	22	2.1	23	84	15	62	52	4	0	43	1.21
48110083--48110136	22	2.5	22	80	17	60	55	3	0	40	1.17
48110405--48110455	26	2.0	26	96	0	93	23	19	3	52	1.62
48114532--48114666	58	2.3	61	83	8	163	48	5	3	42	1.45
48114554--48114666	61	1.9	58	85	5	154	49	5	3	41	1.42
48114554--48114685	61	2.2	58	81	6	149	51	4	3	40	1.40
48115102--48115141	19	2.1	19	86	9	55	32	2	5	60	1.32
48121233--48121270	19	2.0	20	89	5	60	42	0	2	55	1.14
48125053--48125253	44	4.6	44	96	0	330	33	21	14	29	1.94
48149896--48150034	60	2.3	60	83	5	172	42	12	5	38	1.67
48151567--48151602	3	12.0	3	100	0	72	0	0	66	33	0.92
48155538--48155570	14	2.4	14	94	0	57	69	9	0	21	1.15
48155508--48155575	33	2.1	33	82	0	82	64	10	1	23	1.32
48157544--48157856	108	2.9	106	84	6	407	37	12	15	34	1.86
48157866--48157903	20	1.9	20	100	0	76	31	15	10	42	1.81
48159880--48159929	15	3.4	15	71	15	50	38	28	8	26	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48160130--48160195	32	2.1	32	100	0	132	16	25	15	42	1.87
48167496--48167553	3	19.3	3	100	0	116	32	0	0	67	0.91
48176470--48176507	13	2.8	14	88	8	60	84	2	0	13	0.73
48176603--48176652	18	2.8	19	73	11	52	70	2	2	26	1.09
48178299--48178336	18	2.1	18	85	9	51	55	0	21	23	1.44
48178330--48178374	5	9.0	5	97	0	81	40	0	2	57	1.11
48185150--48185239	45	2.0	45	97	0	171	36	4	18	40	1.71
48185771--48185808	18	2.1	18	85	9	51	55	0	21	23	1.44
48185802--48185841	5	8.0	5	97	0	71	40	0	2	57	1.12
48187734--48187853	29	4.1	30	70	19	85	64	3	5	27	1.30
48187733--48187855	20	5.8	20	66	23	72	64	3	4	27	1.30
48187712--48187858	9	15.2	9	69	18	57	63	2	6	27	1.31
48191769--48191798	14	2.1	15	93	6	53	53	0	0	46	1.00
48194139--48194198	10	6.0	10	73	7	50	60	1	3	35	1.23
48194583--48194634	21	2.4	21	83	3	59	26	9	3	59	1.46
48201252--48201312	20	3.2	19	81	15	72	44	1	0	54	1.10
48201286--48201331	16	2.9	16	78	12	51	45	0	2	52	1.13
48201345--48201532	61	3.1	61	69	17	192	42	1	6	48	1.39
48201272--48201569	120	2.5	120	96	1	553	42	1	5	50	1.35
48201397--48201448	15	3.6	15	80	12	56	44	0	1	53	1.11
48201526--48201567	15	2.7	16	82	14	52	45	0	2	52	1.13
48201517--48201558	15	2.9	15	82	10	52	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48201736--48201768	16	2.1	16	94	0	57	21	36	9	33	1.85
48202554--48202645	40	2.2	42	90	3	152	51	9	1	38	1.42
48206666--48206725	3	20.0	3	100	0	120	66	0	0	33	0.92
48213961--48214006	18	2.7	18	76	6	51	56	2	4	36	1.31
48219679--48219708	3	10.0	3	92	0	51	30	33	3	33	1.74
48222572--48222608	2	18.5	2	100	0	74	51	0	48	0	1.00
48232901--48232937	9	4.1	9	86	13	58	45	10	10	32	1.74
48233958--48234000	21	2.0	21	100	0	86	23	30	18	27	1.98
48236050--48236094	22	2.0	22	91	0	72	33	2	15	48	1.57
48240651--48240695	22	2.0	22	91	0	72	33	2	15	48	1.57
48246854--48246899	4	11.5	4	86	9	67	21	4	0	73	1.00
48246855--48246900	24	2.0	23	95	4	83	21	4	0	73	1.00
48248797--48248835	15	2.5	16	83	8	53	64	0	0	35	0.94
48250843--48250871	3	9.7	3	100	0	58	68	0	0	31	0.89
48264607--48264640	16	2.1	16	88	0	50	44	29	2	23	1.68
48266386--48266483	23	4.3	23	90	2	162	31	26	21	20	1.98
48266393--48266481	45	2.0	45	95	0	160	31	26	22	19	1.97
48273758--48273855	23	4.3	23	90	2	162	31	26	21	20	1.98
48273765--48273853	45	2.0	45	95	0	160	31	26	22	19	1.97
48278574--48278805	56	4.1	56	98	0	446	45	9	21	22	1.81
48285609--48285634	13	2.0	13	100	0	52	76	23	0	0	0.78
48287343--48287390	25	1.9	25	83	8	62	58	2	4	35	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48289886--48289945	3	20.0	3	78	0	66	33	1	35	30	1.68
48292538--48292614	22	3.5	22	74	0	55	62	14	7	15	1.53
48293624--48293688	34	1.9	33	84	9	87	36	10	12	40	1.78
48293738--48293776	20	2.0	20	94	0	69	48	2	0	48	1.15
48293816--48293851	18	2.0	18	88	0	54	58	8	2	30	1.42
48294914--48294975	31	2.0	31	100	0	124	41	16	9	32	1.80
48307652--48307696	22	2.0	22	95	0	81	64	8	6	20	1.44
48317048--48317109	11	5.9	10	75	16	54	40	0	1	58	1.08
48319150--48319187	19	2.0	19	89	0	58	68	0	0	31	0.90
48319194--48319246	26	2.0	27	85	7	72	60	1	0	37	1.08
48319634--48319756	57	2.1	59	81	3	142	47	8	12	32	1.70
48327747--48327779	11	2.8	12	86	9	50	18	0	0	81	0.68
48327723--48327780	22	2.5	24	78	15	61	17	6	0	75	1.01
48328356--48328404	3	16.3	3	83	8	64	36	0	2	61	1.08
48330705--48330730	7	3.7	7	100	0	52	46	38	0	15	1.46
48339235--48339431	41	4.8	41	92	5	317	28	20	22	27	1.99
48339648--48339711	33	2.0	32	90	3	101	26	9	25	39	1.86
48339655--48339728	33	2.3	33	80	2	87	28	8	25	37	1.84
48345836--48346360	41	12.8	41	97	1	973	29	21	22	27	1.99
48346575--48346638	33	2.0	32	90	3	101	26	9	25	39	1.86
48346582--48346655	33	2.3	33	80	2	87	28	8	25	37	1.84
48355083--48355245	43	3.8	43	88	0	218	27	29	21	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48355445--48355504	18	3.4	18	64	13	52	40	10	6	43	1.64
48357867--48358029	42	3.9	41	88	4	209	21	19	23	36	1.95
48357870--48358029	84	1.9	84	86	0	230	21	18	23	36	1.95
48358343--48358392	21	2.4	21	86	0	64	4	42	18	36	1.69
48362903--48363208	9	35.0	9	68	10	188	32	2	21	43	1.65
48362925--48363247	104	3.1	104	99	0	628	33	2	21	42	1.68
48362905--48363218	34	9.0	34	78	4	304	32	2	21	43	1.66
48363269--48363307	20	2.0	20	94	0	69	46	5	5	43	1.48
48363246--48363906	57	11.7	57	74	10	563	38	5	9	46	1.61
48363289--48363460	37	4.6	37	92	4	274	34	5	10	48	1.61
48363289--48363735	74	6.2	74	68	16	307	36	5	9	47	1.61
48363493--48363587	20	4.9	20	72	12	90	43	6	7	43	1.58
48363570--48363735	37	4.5	37	94	0	278	35	6	10	47	1.64
48363718--48363755	20	1.9	20	94	0	67	44	10	5	39	1.61
48363775--48363812	20	1.9	20	100	0	76	44	7	5	42	1.56
48363854--48363986	37	3.6	37	90	2	205	33	6	9	49	1.62
48363893--48363952	18	3.3	18	65	21	52	33	5	11	50	1.61
48364503--48364815	156	2.0	155	94	3	549	45	12	13	28	1.80
48366224--48366265	19	2.2	19	86	0	57	23	2	45	28	1.66
48367315--48367345	15	2.1	15	93	0	53	58	32	0	9	1.31
48367636--48367666	15	2.0	16	93	6	55	38	45	0	16	1.47
48368311--48368624	114	2.8	110	82	7	371	28	23	23	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48368635--48368726	40	2.3	40	88	3	132	16	19	25	39	1.92
48374794--48374818	2	12.5	2	100	0	50	52	48	0	0	1.00
48377013--48377223	85	2.5	84	93	2	352	34	24	18	23	1.96
48377013--48377223	43	5.0	43	81	8	254	34	24	18	23	1.96
48377229--48377423	51	3.8	51	81	8	245	32	27	15	24	1.96
48377231--48377415	101	1.8	102	91	3	311	32	26	16	24	1.96
48379232--48379297	33	2.0	33	100	0	132	21	15	21	42	1.89
48380703--48380859	78	2.0	78	92	0	260	24	19	13	42	1.88
48383407--48383519	21	5.4	21	76	8	86	18	23	13	44	1.85
48383401--48383550	42	3.6	41	78	1	138	17	20	16	46	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205