genome.fa.s19.2.7.7.80.10.50.1000.132.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  61124829

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   

This is table  132  of  205  ( 24568 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39981344--39981521	27	6.6	27	80	8	173	29	28	15	26	1.96
39982854--39982977	59	2.1	59	95	0	230	22	25	2	50	1.61
39986797--39987021	40	5.7	40	86	1	242	28	27	21	23	1.99
39991260--39991316	30	2.0	30	86	6	82	21	19	0	59	1.38
39993226--39993350	34	3.7	34	77	6	128	26	24	24	24	2.00
40000046--40000161	34	3.4	34	81	7	137	24	25	25	25	2.00
40001461--40001560	50	2.0	50	100	0	200	44	20	10	26	1.82
40003819--40004022	69	3.0	69	100	0	408	15	20	15	48	1.82
40005587--40005851	103	2.6	104	90	3	417	29	29	20	19	1.97
40006186--40006243	30	1.9	30	82	0	71	31	22	6	39	1.80
40010207--40010418	40	5.3	40	91	0	298	23	20	28	26	1.99
40010207--40010418	80	2.6	80	90	0	334	23	20	28	26	1.99
40010154--40010418	120	2.2	122	82	3	313	24	20	28	26	1.99
40010155--40010453	120	2.5	119	79	5	289	25	20	28	25	1.99
40010506--40010630	61	2.0	61	100	0	250	36	16	17	30	1.92
40013816--40014345	263	2.0	263	100	0	1060	38	16	13	31	1.87
40027541--40027590	21	2.3	23	79	6	59	46	2	2	50	1.24
40027918--40027957	19	2.1	19	85	0	53	40	5	7	47	1.54
40038362--40038584	39	5.7	40	85	8	266	25	22	27	24	2.00
40038362--40038584	79	2.8	81	84	9	282	25	22	27	24	2.00
40038362--40038617	79	3.3	79	81	10	217	26	21	27	24	1.99
40044563--40044602	18	2.2	19	90	4	64	55	0	37	7	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40044913--40044939	14	1.9	14	100	0	54	14	25	22	37	1.93
40058953--40059215	40	6.6	40	87	3	300	26	28	20	24	1.99
40066871--40067048	27	6.6	27	84	3	205	29	28	15	26	1.96
40066892--40067047	82	1.9	81	88	3	233	29	28	15	26	1.96
40074155--40074180	13	2.0	13	100	0	52	38	7	0	53	1.30
40081982--40082510	262	2.0	262	97	0	1004	35	19	8	36	1.82
40107147--40107324	27	6.6	27	83	3	205	26	15	28	29	1.96
40107148--40107303	82	1.9	81	88	3	233	26	15	28	29	1.96
40107144--40107324	82	2.2	81	83	2	229	27	15	27	29	1.96
40115337--40115514	27	6.6	27	83	3	205	26	15	28	29	1.96
40115338--40115493	82	1.9	81	88	3	233	26	15	28	29	1.96
40115334--40115514	82	2.2	81	83	2	229	27	15	27	29	1.96
40117256--40117330	28	2.6	28	81	8	78	46	14	5	33	1.67
40117391--40117447	30	1.9	29	85	3	78	50	17	0	31	1.46
40118532--40119041	254	2.0	254	100	0	1020	25	19	22	31	1.98
40122010--40122044	18	1.9	18	88	11	54	22	20	0	57	1.41
40124934--40124968	18	1.9	18	88	11	54	22	20	0	57	1.41
40129672--40129812	70	2.0	70	100	0	282	22	18	22	36	1.95
40133107--40133131	13	1.9	13	100	0	50	36	16	32	16	1.90
40134541--40134587	20	2.3	20	85	0	67	29	36	12	21	1.91
40139730--40140073	173	2.0	172	87	2	494	18	21	20	40	1.92
40142272--40142310	13	2.9	13	88	7	60	64	2	10	23	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40157908--40157939	12	2.7	12	100	0	64	18	6	0	75	1.01
40158969--40158993	13	1.9	13	100	0	50	36	16	32	16	1.90
40159499--40159536	10	3.8	10	83	13	51	21	18	31	28	1.97
40159476--40159536	20	3.0	20	83	9	63	27	14	27	29	1.95
40159500--40159537	20	1.9	20	94	0	67	18	18	34	28	1.95
40159859--40159929	33	2.2	32	92	5	124	26	11	16	45	1.82
40161303--40161372	32	2.2	32	89	2	104	42	12	20	24	1.86
40161384--40161428	20	2.2	20	84	7	56	26	24	24	24	2.00
40164060--40164102	15	2.9	14	75	18	50	6	30	2	60	1.35
40164114--40164153	18	2.2	18	86	0	53	10	27	0	62	1.27
40164147--40164204	18	3.2	18	85	0	80	8	18	5	67	1.37
40164108--40164183	30	2.5	30	78	4	82	11	23	2	61	1.42
40164197--40164302	36	2.9	35	90	4	122	14	29	1	54	1.50
40164181--40164279	36	2.5	40	75	18	100	14	26	2	57	1.48
40164216--40164302	36	2.4	36	96	0	156	13	29	2	54	1.52
40165371--40165407	10	3.7	10	86	13	58	13	2	8	75	1.13
40169165--40169228	28	2.3	27	79	12	76	56	9	3	31	1.47
40169357--40169401	20	2.2	20	84	7	56	26	24	24	24	2.00
40175710--40175768	23	2.5	25	78	13	70	35	33	5	25	1.78
40180401--40180459	21	3.0	20	78	16	68	11	25	0	62	1.29
40180423--40180459	12	3.3	12	78	21	53	10	24	0	64	1.25
40180399--40180465	18	3.5	18	76	13	71	10	23	0	65	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40191103--40191282	28	6.5	28	94	2	294	26	13	28	31	1.94
40191103--40191282	55	3.3	55	94	1	299	26	13	28	31	1.94
40191103--40191282	83	2.2	82	93	1	306	26	13	28	31	1.94
40197610--40197658	22	2.2	23	82	10	66	42	18	8	30	1.79
40199895--40199953	29	2.0	29	100	0	118	32	30	10	27	1.89
40200724--40200791	29	2.3	29	85	5	93	27	30	13	27	1.94
40200870--40200992	28	4.4	28	90	2	176	33	28	12	26	1.92
40213141--40213906	383	2.0	384	92	1	1295	30	19	16	33	1.94
40216297--40216359	21	3.0	21	88	2	90	30	3	33	33	1.74
40218630--40218686	21	2.7	21	76	7	53	10	26	1	61	1.38
40220876--40220911	18	2.0	18	100	0	72	11	5	11	72	1.28
40221223--40221285	21	3.0	21	88	2	90	30	3	33	33	1.74
40233487--40233518	12	2.7	12	100	0	64	81	6	0	12	0.87
40235832--40235898	21	3.1	21	82	4	71	34	32	2	29	1.73
40238213--40238259	20	2.3	20	85	0	67	29	36	12	21	1.91
40239884--40240697	407	2.0	407	99	0	1601	26	21	22	30	1.98
40241278--40241361	30	2.8	30	84	10	109	20	34	17	27	1.95
40243271--40243389	62	1.9	61	91	1	193	41	20	18	20	1.91
40246978--40247022	14	3.3	13	84	6	54	48	13	2	35	1.54
40254200--40254278	39	2.1	39	95	2	142	26	2	12	58	1.47
40257184--40257258	21	3.7	19	72	13	62	68	2	21	8	1.28
40257198--40257282	18	4.6	18	71	8	62	64	2	22	10	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40258911--40258967	20	2.9	20	81	2	71	24	26	21	28	1.99
40261846--40261885	19	2.2	19	90	4	64	75	2	17	5	1.10
40261920--40261952	13	2.5	14	85	14	52	63	0	24	12	1.28
40263646--40263710	33	1.9	34	90	3	105	32	7	15	44	1.75
40266092--40266242	40	3.8	40	89	2	205	25	29	20	24	1.99
40266215--40266418	100	2.0	100	96	0	372	32	25	12	29	1.92
40274522--40274698	27	6.5	27	82	5	169	28	28	16	25	1.97
40274543--40274702	82	2.0	81	87	3	232	28	29	16	25	1.97
40285541--40285620	27	3.0	27	80	10	92	33	16	21	28	1.95
40285630--40285694	27	2.4	27	78	0	67	40	16	23	20	1.92
40295627--40295706	27	3.0	27	80	10	92	33	16	21	28	1.95
40295716--40295780	27	2.4	27	78	0	67	40	16	23	20	1.92
40302374--40302416	6	7.2	6	91	0	68	18	2	0	79	0.85
40303163--40303220	20	3.0	20	87	7	66	39	3	20	36	1.70
40303175--40303220	20	2.3	20	96	0	83	36	2	21	39	1.66
40303209--40303282	20	3.7	19	83	7	76	36	10	14	37	1.82
40303201--40303290	40	2.2	39	79	13	94	38	8	16	35	1.80
40306820--40306898	37	2.1	37	88	4	115	25	29	18	26	1.98
40307017--40307208	47	4.1	47	86	0	267	27	31	9	31	1.88
40311243--40311274	16	2.0	16	93	0	55	78	0	0	21	0.76
40311241--40311275	17	2.1	17	88	0	52	77	0	0	22	0.78
40316326--40316350	11	2.3	11	100	0	50	8	28	0	64	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40318055--40318155	49	2.1	49	98	0	193	39	1	19	38	1.63
40318344--40318371	10	2.8	10	100	0	56	10	10	7	71	1.31
40319028--40319119	44	2.1	44	86	8	125	19	22	25	32	1.97
40319398--40319492	21	4.5	22	84	7	108	14	21	26	37	1.92
40320361--40320430	22	3.2	22	76	8	79	20	22	17	40	1.92
40322345--40322369	11	2.3	11	100	0	50	8	28	0	64	1.22
40323623--40323674	25	2.1	25	85	0	68	36	9	15	38	1.80
40326153--40326199	24	2.0	24	84	16	62	31	0	14	53	1.42
40326359--40326494	40	3.5	39	77	10	152	26	18	25	30	1.98
40332361--40332459	48	2.1	48	98	0	189	42	18	9	30	1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205